Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20687664
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 40 of 91
Found at i:8693976 original size:21 final size:21
Alignment explanation
Indices: 8693942--8693987 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
8693932 TGGTCGTATT
*
8693942 GGGTGAAACTTTTCCAAAGTC
1 GGGTGAAACCTTTCCAAAGTC
*
8693963 GGGTGGAACCTTTCCAAAGTC
1 GGGTGAAACCTTTCCAAAGTC
8693984 GGGT
1 GGGT
8693988 TTCGGGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (21 bp):
GGGTGAAACCTTTCCAAAGTC
Found at i:8694793 original size:17 final size:17
Alignment explanation
Indices: 8694771--8694812 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
8694761 CCCTCAGCTA
8694771 AGAATCAATCAAAAATT
1 AGAATCAATCAAAAATT
8694788 AGAATCAATCAAAAATT
1 AGAATCAATCAAAAATT
*
8694805 GGAATCAA
1 AGAATCAA
8694813 AGGAGTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.21
Consensus pattern (17 bp):
AGAATCAATCAAAAATT
Found at i:8696018 original size:20 final size:20
Alignment explanation
Indices: 8695993--8696032 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8695983 CACATTTAAC
8695993 GAGGGATACCATATATGCAT
1 GAGGGATACCATATATGCAT
8696013 GAGGGATACCATATATGCAT
1 GAGGGATACCATATATGCAT
8696033 ACAGAAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (20 bp):
GAGGGATACCATATATGCAT
Found at i:8700765 original size:2 final size:2
Alignment explanation
Indices: 8700758--8700783 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8700748 ATGATTCCAA
8700758 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8700784 GAGATTCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8703018 original size:178 final size:175
Alignment explanation
Indices: 8702719--8703074 Score: 622
Period size: 178 Copynumber: 2.0 Consensus size: 175
8702709 TTATGGTTTC
8702719 TAAAAAATAGTGAGATCTTAAAAAAACTTTACAAGTCATATAACCCTAGCCAACTCAACATTTTT
1 TAAAAAATAGTGAGATCTTAAAAAAACTTTACAAGTCATATAACCCTAGCCAACTCAACATTTTT
* * * *
8702784 CTCAGCCATTCTGGTTTGACTTTAACTGTTTCCACAAATTAGGAACAACGTTTAATAGTTTAATA
66 CTCAGCCATTCCGGTTTGACTTGAACTGTTTCCACAAATTAGGAACAACATTTAATAGTTTAACA
8702849 TCAGAGTGCATGTCCATATATACTTGGTTTAAATATAAAAAAACA
131 TCAGAGTGCATGTCCATATATACTTGGTTTAAATATAAAAAAACA
**
8702894 TAAAAAATAGTGAGATCTTAAAAAAAAAACTTTACAAGTCATATAACCCTAGCCAACTCGGCATT
1 TAAAAAATAGTGAGATCTT---AAAAAAACTTTACAAGTCATATAACCCTAGCCAACTCAACATT
8702959 TTTCTCAGCCATTCCGGTTTGACTTGAACTGTTTCCACAAATTAGGAACAACATTTAATAGTTTA
63 TTTCTCAGCCATTCCGGTTTGACTTGAACTGTTTCCACAAATTAGGAACAACATTTAATAGTTTA
*
8703024 ACATCAGAGTGCATGTCCATATATACTTGGTTTAAATATAAAAAAGCA
128 ACATCAGAGTGCATGTCCATATATACTTGGTTTAAATATAAAAAAACA
8703072 TAA
1 TAA
8703075 GACAAAAACT
Statistics
Matches: 171, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
175 19 0.11
178 152 0.89
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.31
Consensus pattern (175 bp):
TAAAAAATAGTGAGATCTTAAAAAAACTTTACAAGTCATATAACCCTAGCCAACTCAACATTTTT
CTCAGCCATTCCGGTTTGACTTGAACTGTTTCCACAAATTAGGAACAACATTTAATAGTTTAACA
TCAGAGTGCATGTCCATATATACTTGGTTTAAATATAAAAAAACA
Found at i:8706811 original size:21 final size:21
Alignment explanation
Indices: 8706768--8706820 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
8706758 ATTCTGACTA
8706768 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * **
8706789 TCGCGTTGCGATTTTCCTTAT
1 TCGCATTGCGATTTCCCAAAT
*
8706810 TCGCAATGCGA
1 TCGCATTGCGA
8706821 ATACGTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:8706882 original size:20 final size:20
Alignment explanation
Indices: 8706810--8706883 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
8706800 TTTTCCTTAT
*
8706810 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGATTACGTAAA
* ** *
8706830 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCG-ATTACGTAAA
8706851 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
8706871 TCGCAATGCGATT
1 TCGCAATGCGATT
8706884 TACATAGCGC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 29 0.66
21 15 0.34
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGATTACGTAAA
Found at i:8707084 original size:22 final size:22
Alignment explanation
Indices: 8707059--8707120 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 22
8707049 GGCGACATCC
8707059 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
* *
8707081 GTCCCCA----CGACGATATAA
1 GTCCCCATCTCCGACGAAATCA
* *
8707099 GTCTCCATCTCCGGCGAAATCA
1 GTCCCCATCTCCGACGAAATCA
8707121 TTCACGGTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
18 15 0.50
22 15 0.50
ACGTcount: A:0.27, C:0.37, G:0.16, T:0.19
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCA
Found at i:8707512 original size:20 final size:20
Alignment explanation
Indices: 8707453--8707538 Score: 84
Period size: 20 Copynumber: 4.3 Consensus size: 20
8707443 GTGATTCTGT
**
8707453 CGTTGCGATTTTCA-TTTCG
1 CGTTGCGATAGTCATTTTCG
**
8707472 CGTTTGCGATAGTCAAATTCG
1 CG-TTGCGATAGTCATTTTCG
8707493 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
8707513 TGTTGCGATTTTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
*
8707533 TGTTGC
1 CGTTGC
8707539 AATTTAATGT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
19 2 0.04
20 49 0.86
21 6 0.11
ACGTcount: A:0.14, C:0.19, G:0.23, T:0.44
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:8707543 original size:20 final size:20
Alignment explanation
Indices: 8707504--8707543 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8707494 GTTGCGATAG
*
8707504 TCATTTTCGTGTTGCGATTT
1 TCATTTTCGTGTTGCAATTT
8707524 TCATTTTCGTGTTGCAATTT
1 TCATTTTCGTGTTGCAATTT
8707544 AATGTTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.15, G:0.17, T:0.55
Consensus pattern (20 bp):
TCATTTTCGTGTTGCAATTT
Found at i:8709437 original size:20 final size:20
Alignment explanation
Indices: 8709412--8709515 Score: 139
Period size: 20 Copynumber: 5.5 Consensus size: 20
8709402 AGAATAGTTT
8709412 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
8709432 ACTATCGCAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
8709448 A--ATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
8709466 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
**
8709486 ACTATCGCAATGCGAATTTG
1 ACTATCGCAATGCGAAAATG
8709506 ACTATCGCAA
1 ACTATCGCAA
8709516 CGAAAGAATC
Statistics
Matches: 74, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
14 7 0.09
16 4 0.05
17 4 0.05
18 4 0.05
20 55 0.74
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.20
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:8709458 original size:34 final size:34
Alignment explanation
Indices: 8709415--8709536 Score: 154
Period size: 34 Copynumber: 3.4 Consensus size: 34
8709405 ATAGTTTACT
*
8709415 ATCGCAATGCGAAAATGACTATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGACTATCGCAACGAAAGA
8709449 ATCGCAATGCGAAAATGACTATCGCAATGCGAAAATGA
1 ATCGCAATGCGAAAATGACTATCGCAA--CG-AAA-GA
**
8709487 CTATCGCAATGCGAATTTGACTATCGCAACGAAAGA
1 --ATCGCAATGCGAAAATGACTATCGCAACGAAAGA
*
8709523 ATCGCAATGTGAAA
1 ATCGCAATGCGAAA
8709537 TGAAAATTGC
Statistics
Matches: 77, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
34 39 0.51
36 4 0.05
37 5 0.06
38 4 0.05
40 25 0.32
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (34 bp):
ATCGCAATGCGAAAATGACTATCGCAACGAAAGA
Found at i:8709587 original size:20 final size:20
Alignment explanation
Indices: 8709562--8709715 Score: 129
Period size: 20 Copynumber: 8.3 Consensus size: 20
8709552 GATTCTCTCG
**
8709562 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
8709582 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
8709602 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
8709622 TTGCGAT--T--TTGTT-G--
1 TTGCGATAGTCATT-TTCGCA
**
8709636 TTGCGATTTTCA-TTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
8709655 TTGCGAT--TC--TCTCG--
1 TTGCGATAGTCATTTTCGCA
*
8709669 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
*
8709689 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
8709709 TTGCGAT
1 TTGCGAT
8709716 TTTAAGTTTC
Statistics
Matches: 115, Mismatches: 5, Indels: 28
0.78 0.03 0.19
Matches are distributed among these distances:
14 14 0.12
16 12 0.10
17 6 0.05
18 5 0.04
19 7 0.06
20 71 0.62
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:8709659 original size:33 final size:34
Alignment explanation
Indices: 8709548--8709695 Score: 145
Period size: 34 Copynumber: 4.2 Consensus size: 34
8709538 GAAAATTGCA
** *
8709548 TTGCGATTCTCTCGTTGCGATAGTCAAATTCGCA
1 TTGCGATTCTCTCGTTGCGATAGTCATTTTCGCG
*
8709582 TTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTCGCG
1 TTGCGAT--TC--TCTCG--TTGCGATAGTCATTTTCGCG
* * * ** *
8709622 TTGCGATTTTGTTGTTGCGATTTTCA-TTTCGCA
1 TTGCGATTCTCTCGTTGCGATAGTCATTTTCGCG
8709655 TTGCGATTCTCTCGTTGCGATAGTCATTTTCGCG
1 TTGCGATTCTCTCGTTGCGATAGTCATTTTCGCG
8709689 TTGCGAT
1 TTGCGAT
8709696 AGTCATTTTC
Statistics
Matches: 91, Mismatches: 16, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
33 27 0.30
34 30 0.33
36 5 0.05
38 5 0.05
40 24 0.26
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (34 bp):
TTGCGATTCTCTCGTTGCGATAGTCATTTTCGCG
Found at i:8709725 original size:20 final size:20
Alignment explanation
Indices: 8709667--8709725 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
8709657 GCGATTCTCT
* *
8709667 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTAAGTTTCG
* *
8709687 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTAAGTTTCG
**
8709707 CGTTGCGATTTTAAGTTTC
1 CGTTGCGATAGTAAGTTTC
8709726 AGATTCTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.15, C:0.19, G:0.24, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTAAGTTTCG
Found at i:8710290 original size:21 final size:21
Alignment explanation
Indices: 8710199--8710297 Score: 74
Period size: 21 Copynumber: 4.7 Consensus size: 21
8710189 GACTCACCTG
* *
8710199 TCATCGTTCAAGAGGTCTACCC
1 TCATCGTTCAAGAGG-CCACTC
* *
8710221 T-ATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCACTC
** * *
8710241 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAGGCCACTC
* * *
8710262 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCACTC
*
8710283 TCATCGTTGAAGAGG
1 TCATCGTTCAAGAGG
8710298 TCCCTCCCAA
Statistics
Matches: 58, Mismatches: 18, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
20 3 0.05
21 54 0.93
22 1 0.02
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCACTC
Found at i:8710296 original size:42 final size:42
Alignment explanation
Indices: 8710224--8710306 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
8710214 TCTACCCTAT
*
8710224 CGTTCAAGAGGCCCCTATCATCCCTCAAGA-GTCCCCTCCCAC
1 CGTTCAAGAGGCCACTATCATCCCTCAAGAGGT-CCCTCCCAC
* ** *
8710266 CGTTCAAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCA
1 CGTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCA
8710307 ACATTCTAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.22, C:0.39, G:0.19, T:0.20
Consensus pattern (42 bp):
CGTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCAC
Found at i:8711686 original size:14 final size:14
Alignment explanation
Indices: 8711667--8711702 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8711657 ATTGTTTAAT
8711667 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
8711681 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
8711695 TGATTTGT
1 TGATTTGT
8711703 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:8712940 original size:23 final size:23
Alignment explanation
Indices: 8712903--8712955 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
8712893 TCTGAAAATC
8712903 ATCAAATCCGAGTATTGACCAAG
1 ATCAAATCCGAGTATTGACCAAG
8712926 ATCAAAGTCCG-GTATTGACCAAG
1 ATCAAA-TCCGAGTATTGACCAAG
8712949 ATCAAAT
1 ATCAAAT
8712956 TTGAATACTG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 1 0.03
23 24 0.83
24 4 0.14
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (23 bp):
ATCAAATCCGAGTATTGACCAAG
Found at i:8713822 original size:20 final size:20
Alignment explanation
Indices: 8713799--8713935 Score: 113
Period size: 20 Copynumber: 6.8 Consensus size: 20
8713789 TTGCGATAGT
* *
8713799 CAGAATCTCGTTGCGATTTA
1 CAGAATCGCATTGCGATTTA
*
8713819 CAGATTCGCATTGCGATTTA
1 CAGAATCGCATTGCGATTTA
8713839 C-GTAATCGCATTGCGATTTA
1 CAG-AATCGCATTGCGATTTA
*
8713859 C-GTATTCGCATTGCGATTTA
1 CAG-AATCGCATTGCGATTTA
* *
8713879 C-GTATTCGCATTGCGATTTT
1 CAG-AATCGCATTGCGATTTA
*
8713899 CTA-AATTCGCGTTGCGATTTA
1 C-AGAA-TCGCATTGCGATTTA
*
8713920 C-GTATTCGCATTGCGA
1 CAG-AATCGCATTGCGA
8713936 ATTAGGAAAA
Statistics
Matches: 100, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
19 1 0.01
20 84 0.84
21 15 0.15
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (20 bp):
CAGAATCGCATTGCGATTTA
Found at i:8713919 original size:41 final size:40
Alignment explanation
Indices: 8713809--8713935 Score: 186
Period size: 40 Copynumber: 3.1 Consensus size: 40
8713799 CAGAATCTCG
*
8713809 TTGCGATTTAC-AGATTCGCATTGCGATTTACGTAATCGCA
1 TTGCGATTTACTA-ATTCGCATTGCGATTTACGTATTCGCA
8713849 TTGCGATTTACGT-ATTCGCATTGCGATTTACGTATTCGCA
1 TTGCGATTTAC-TAATTCGCATTGCGATTTACGTATTCGCA
* *
8713889 TTGCGATTTTCTAAATTCGCGTTGCGATTTACGTATTCGCA
1 TTGCGATTTACT-AATTCGCATTGCGATTTACGTATTCGCA
8713930 TTGCGA
1 TTGCGA
8713936 ATTAGGAAAA
Statistics
Matches: 80, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
39 1 0.01
40 47 0.59
41 32 0.40
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (40 bp):
TTGCGATTTACTAATTCGCATTGCGATTTACGTATTCGCA
Found at i:8713958 original size:21 final size:21
Alignment explanation
Indices: 8713932--8714019 Score: 140
Period size: 21 Copynumber: 4.2 Consensus size: 21
8713922 TATTCGCATT
8713932 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
*
8713953 GTGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
8713974 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* * *
8713995 GCGAATTTGGGAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
8714016 GCGA
1 GCGA
8714020 TAGTCAGAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:8715834 original size:15 final size:15
Alignment explanation
Indices: 8715809--8715909 Score: 63
Period size: 15 Copynumber: 6.9 Consensus size: 15
8715799 TTGGTTTTCG
8715809 GAAA-ATGAATTACT
1 GAAATATGAATTACT
*
8715823 GAAATTTGAATTACT
1 GAAATATGAATTACT
8715838 GGAAA-ATGAATTA-T
1 -GAAATATGAATTACT
* *
8715852 TAGAATTTGAATT-CT
1 GA-AATATGAATTACT
8715867 GGAAA-ATGAATTA-T
1 -GAAATATGAATTACT
* *
8715881 TAGAATTTGAATT-CT
1 GA-AATATGAATTACT
*
8715896 GAAAAATGAATTAC
1 GAAATATGAATTAC
8715910 ATTTTTGGAA
Statistics
Matches: 65, Mismatches: 11, Indels: 21
0.67 0.11 0.22
Matches are distributed among these distances:
13 2 0.03
14 24 0.37
15 34 0.52
16 5 0.08
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.35
Consensus pattern (15 bp):
GAAATATGAATTACT
Found at i:8715878 original size:29 final size:29
Alignment explanation
Indices: 8715808--8715908 Score: 159
Period size: 29 Copynumber: 3.4 Consensus size: 29
8715798 ATTGGTTTTC
*
8715808 GGAAAATGAATTACT-GAAATTTGAATTACT
1 GGAAAATGAATTATTAG-AATTTGAATT-CT
8715838 GGAAAATGAATTATTAGAATTTGAATTCT
1 GGAAAATGAATTATTAGAATTTGAATTCT
8715867 GGAAAATGAATTATTAGAATTTGAATTCT
1 GGAAAATGAATTATTAGAATTTGAATTCT
*
8715896 GAAAAATGAATTA
1 GGAAAATGAATTA
8715909 CATTTTTGGA
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
29 43 0.63
30 24 0.35
31 1 0.01
ACGTcount: A:0.45, C:0.04, G:0.17, T:0.35
Consensus pattern (29 bp):
GGAAAATGAATTATTAGAATTTGAATTCT
Found at i:8716182 original size:29 final size:31
Alignment explanation
Indices: 8716140--8716199 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
8716130 ATTAAATAGT
*
8716140 ATTTTTATAATTTA-T-TAATAAAAATATTA
1 ATTTTTATAATTTAGTGAAATAAAAATATTA
* *
8716169 ATTTTTTTATTTTAGTGAAATAAAAATATTA
1 ATTTTTATAATTTAGTGAAATAAAAATATTA
8716200 TAAATATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 12 0.46
30 1 0.04
31 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (31 bp):
ATTTTTATAATTTAGTGAAATAAAAATATTA
Found at i:8716268 original size:19 final size:19
Alignment explanation
Indices: 8716226--8716268 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8716216 TAATAGTGTA
8716226 TATTATATTTTAAAATATT
1 TATTATATTTTAAAATATT
* *
8716245 AATTAGTATTTT-AAATCTT
1 TATTA-TATTTTAAAATATT
8716264 TATTA
1 TATTA
8716269 AATATCATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (19 bp):
TATTATATTTTAAAATATT
Found at i:8716291 original size:19 final size:17
Alignment explanation
Indices: 8716264--8716309 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
8716254 TTTAAATCTT
8716264 TATTAAATATCATTTAAA
1 TATTAAATATCA-TTAAA
* *
8716282 TATATAAATATTATTAAT
1 TAT-TAAATATCATTAAA
8716300 TATTAAATAT
1 TATTAAATAT
8716310 AAATTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 7 0.28
18 10 0.40
19 8 0.32
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TATTAAATATCATTAAA
Found at i:8716337 original size:24 final size:24
Alignment explanation
Indices: 8716292--8716337 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
8716282 TATATAAATA
*
8716292 TTATTAATTATTAAATATAAATTT
1 TTATTAATTATTAAATAAAAATTT
8716316 TTATTATATTATTAAA-AAAAAT
1 TTATTA-ATTATTAAATAAAAAT
8716338 ATAATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TTATTAATTATTAAATAAAAATTT
Found at i:8716375 original size:28 final size:30
Alignment explanation
Indices: 8716319--8716423 Score: 102
Period size: 28 Copynumber: 3.8 Consensus size: 30
8716309 TAAATTTTTA
*
8716319 TTATATTATTAA-AA-A-AA-AT-ATAATC
1 TTATATTATTAATAATATAATATGATAATT
*
8716344 TTATATTATT-ATAATATAAT-TGATTATT
1 TTATATTATTAATAATATAATATGATAATT
* *
8716372 TTATA-TATTAAAAATATAATATTATAATT
1 TTATATTATTAATAATATAATATGATAATT
8716401 TTATATATATTAATAA-ATAATAT
1 TTATAT-TATTAATAATATAATAT
8716424 TTTGATGAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 13
0.77 0.07 0.15
Matches are distributed among these distances:
24 1 0.02
25 12 0.18
26 1 0.02
27 7 0.11
28 18 0.28
29 11 0.17
30 7 0.11
31 8 0.12
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.49
Consensus pattern (30 bp):
TTATATTATTAATAATATAATATGATAATT
Found at i:8716392 original size:33 final size:31
Alignment explanation
Indices: 8716353--8716423 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
8716343 CTTATATTAT
* *
8716353 TATAATATAATTGATTATTTTATATATTAAAAA
1 TATAATATAA-TAATT-TTATATATATTAAAAA
* *
8716386 TATAATATTATAATTTTATATATATTAATAA
1 TATAATATAATAATTTTATATATATTAAAAA
8716417 -ATAATAT
1 TATAATAT
8716424 TTTGATGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 7 0.21
31 14 0.41
32 4 0.12
33 9 0.26
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (31 bp):
TATAATATAATAATTTTATATATATTAAAAA
Found at i:8723949 original size:18 final size:20
Alignment explanation
Indices: 8723928--8723968 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8723918 TTTTATTTTA
8723928 TTTTATC-TT-ATTATAATT
1 TTTTATCGTTAATTATAATT
*
8723946 TTTTATCGTTAATTATTATT
1 TTTTATCGTTAATTATAATT
8723966 TTT
1 TTT
8723969 GCAATGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 2 0.10
20 11 0.55
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTATCGTTAATTATAATT
Found at i:8724184 original size:19 final size:19
Alignment explanation
Indices: 8724160--8724197 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8724150 ATGGATGCCA
8724160 AAGTTTGGAAAAGGATGTC
1 AAGTTTGGAAAAGGATGTC
8724179 AAGTTTGGAAAAGGATGTC
1 AAGTTTGGAAAAGGATGTC
8724198 GGTTTACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.32, T:0.26
Consensus pattern (19 bp):
AAGTTTGGAAAAGGATGTC
Found at i:8731121 original size:21 final size:21
Alignment explanation
Indices: 8731095--8731158 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
8731085 TTTTGGTGCA
*
8731095 GAGGGAATCGATCCCCCCCAT
1 GAGGGAACCGATCCCCCCCAT
* **
8731116 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATCCCCCCCAT
*
8731137 GAAGGGGAACCGATTCCCCCCA
1 G-A-GGGAACCGATCCCCCCCA
8731159 CAGGGGAATC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 18 0.51
22 1 0.03
23 16 0.46
ACGTcount: A:0.23, C:0.36, G:0.25, T:0.16
Consensus pattern (21 bp):
GAGGGAACCGATCCCCCCCAT
Found at i:8731165 original size:21 final size:21
Alignment explanation
Indices: 8731097--8731178 Score: 62
Period size: 21 Copynumber: 3.8 Consensus size: 21
8731087 TTGGTGCAGA
*
8731097 GGGAATCGA-TCCCCCC-CATG
1 GGGAACCGATTCCCCCCACA-G
*
8731117 AGGGAACCGATTCCCCCTTTGA-AG
1 -GGGAACCGATTCCCCC---CACAG
8731141 GGGAACCGATTCCCCCCACAG
1 GGGAACCGATTCCCCCCACAG
* *
8731162 GGGAATCGATACCCCCC
1 GGGAACCGATTCCCCCC
8731179 TGGGGTTCTG
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
20 1 0.02
21 25 0.50
22 6 0.12
23 16 0.32
24 1 0.02
25 1 0.02
ACGTcount: A:0.23, C:0.38, G:0.24, T:0.15
Consensus pattern (21 bp):
GGGAACCGATTCCCCCCACAG
Found at i:8737838 original size:30 final size:29
Alignment explanation
Indices: 8737802--8737863 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
8737792 TATAGTAATG
8737802 AAAAATATGTTGAGTTAATCAAAACCAATA
1 AAAAATATGTTGAGTTAAT-AAAACCAATA
* **
8737832 AAAAATATGTTGATTTAATTGAACCAATA
1 AAAAATATGTTGAGTTAATAAAACCAATA
8737861 AAA
1 AAA
8737864 TACAAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.29
Consensus pattern (29 bp):
AAAAATATGTTGAGTTAATAAAACCAATA
Found at i:8737972 original size:62 final size:63
Alignment explanation
Indices: 8737895--8738029 Score: 200
Period size: 63 Copynumber: 2.2 Consensus size: 63
8737885 CAAAATTTAG
* * *
8737895 CTTATGGTTTTAAAACCCCCTT-AGGTGGTTTTAAAACCACTAAGACAGTAGCAAAAACTTCA
1 CTTATGGTTTCAAAACCCCCTTCAGGTGGCTTCAAAACCACTAAGACAGTAGCAAAAACTTCA
* * *
8737957 CTTATGGTTTCAAAACCCCCTTCAGGTGGCTTCCAAACCACTAAGGCAGTAGCAAAAACTTTA
1 CTTATGGTTTCAAAACCCCCTTCAGGTGGCTTCAAAACCACTAAGACAGTAGCAAAAACTTCA
*
8738020 TTTATGGTTT
1 CTTATGGTTT
8738030 TAATTTTAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
62 21 0.32
63 44 0.68
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (63 bp):
CTTATGGTTTCAAAACCCCCTTCAGGTGGCTTCAAAACCACTAAGACAGTAGCAAAAACTTCA
Found at i:8738780 original size:73 final size:73
Alignment explanation
Indices: 8738677--8738820 Score: 234
Period size: 73 Copynumber: 2.0 Consensus size: 73
8738667 AATATTCAAT
* * * *
8738677 ATTACATTCATCAACTTTTTCAAATGTAAATGTATTGAATATCATAGCATAAGTATCAATATTTT
1 ATTACATTCATCAACTTTTTCAAATGTAAATGTATTAAACATCATAACATAAGTATCAATATTTA
8738742 AACTTTCG
66 AACTTTCG
* *
8738750 ATTACCTTCATCAACTTTTTCAAATTTAAATGTATTAAACATCATAACATAAGTATCAATATTTA
1 ATTACATTCATCAACTTTTTCAAATGTAAATGTATTAAACATCATAACATAAGTATCAATATTTA
8738815 AACTTT
66 AACTTT
8738821 ATAATTAACT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 65 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (73 bp):
ATTACATTCATCAACTTTTTCAAATGTAAATGTATTAAACATCATAACATAAGTATCAATATTTA
AACTTTCG
Found at i:8739379 original size:201 final size:202
Alignment explanation
Indices: 8738978--8739426 Score: 600
Period size: 201 Copynumber: 2.2 Consensus size: 202
8738968 CGTATGTGCC
* * *
8738978 GATATTACCTTCAAATGAAAGATAAGCTGCAATACTATGCCTCTAAGCTTAAAAATTACAAAAAA
1 GATATTACCCTCAAATGAAAGATAAGTTGCAATACTATGCCTCTAAGCTTAAAAAATACAAAAAA
** *
8739043 TATTTCGAGTAACTTTTTGGAAATACCCCTCAAACATGCCTATCAAGCCATTTTAGCATGTTCTT
66 TATTTCGAGTAACTTCCTAGAAATACCCCTCAAACATGCCTATCAAGCCATTTTAGCATGTTCTT
* * * ** * *
8739108 CATGCACAAAACCATGCATTGGAACCATTTTCAATATGATTTTTATCCCGCTTACAATGTCTCGT
131 CATGCACAAAACCAAGCATTGAAACAATTTTCAATACAATTTTTATCCCACTTACAATGTCTCAT
8739173 ATGTGTT
196 ATGTGTT
* * * *
8739180 GATATTACCCTCAACTAAAAGATAAGTTGTAATACTACGCCTCTAAGCTTAAAAAATACAAAAAA
1 GATATTACCCTCAAATGAAAGATAAGTTGCAATACTATGCCTCTAAGCTTAAAAAATACAAAAAA
* * * *
8739245 -A-TTCGATTAACTTCCTAGAAATACCCCTCGAACATGTCTATCAAAGTCATTTTAGC-TAGTTC
66 TATTTCGAGTAACTTCCTAGAAATACCCCTCAAACATGCCTATC-AAGCCATTTTAGCAT-GTTC
* *
8739307 TTCATGCACAAAACCAAGCTTTGAAACAATTTTCAATGCAATTTTTA-CCTCACTTACAATGTCT
129 TTCATGCACAAAACCAAGCATTGAAACAATTTTCAATACAATTTTTATCC-CACTTACAATGTCT
8739371 CATATGTGTT
193 CATATGTGTT
* * * *
8739381 GATACTAGCCTCAAATGATAGATAAATTGCAATACTATGCCTCTAA
1 GATATTACCCTCAAATGAAAGATAAGTTGCAATACTATGCCTCTAA
8739427 TTTTATAAAT
Statistics
Matches: 213, Mismatches: 31, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
200 38 0.18
201 117 0.55
202 58 0.27
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (202 bp):
GATATTACCCTCAAATGAAAGATAAGTTGCAATACTATGCCTCTAAGCTTAAAAAATACAAAAAA
TATTTCGAGTAACTTCCTAGAAATACCCCTCAAACATGCCTATCAAGCCATTTTAGCATGTTCTT
CATGCACAAAACCAAGCATTGAAACAATTTTCAATACAATTTTTATCCCACTTACAATGTCTCAT
ATGTGTT
Found at i:8742980 original size:17 final size:17
Alignment explanation
Indices: 8742958--8743001 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
8742948 TAGTCTATTC
8742958 AAAAATAATTTATCGTT
1 AAAAATAATTTATCGTT
8742975 AAAAATAATTTATCGTT
1 AAAAATAATTTATCGTT
*
8742992 ATAAATAATT
1 AAAAATAATT
8743002 AAATAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.41
Consensus pattern (17 bp):
AAAAATAATTTATCGTT
Found at i:8747936 original size:2 final size:2
Alignment explanation
Indices: 8747929--8747957 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8747919 CAATTTTGTA
8747929 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8747958 AATTTATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8748169 original size:18 final size:19
Alignment explanation
Indices: 8748146--8748188 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
8748136 CAGTAATCAT
8748146 ATTCC-CTGATAATTTTAC
1 ATTCCACTGATAATTTTAC
* *
8748164 ATTCCCACTGGTAATTTTAT
1 ATT-CCACTGATAATTTTAC
8748184 ATTCC
1 ATTCC
8748189 GTGAACCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 3 0.14
19 4 0.19
20 14 0.67
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (19 bp):
ATTCCACTGATAATTTTAC
Found at i:8752170 original size:20 final size:21
Alignment explanation
Indices: 8752116--8752178 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
8752106 GATTCTCCTG
8752116 TGGGGGGAATCGGTTCCCATTCAA
1 TGGGGGG-ATCGGTTCCC--TCAA
* *
8752140 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
8752160 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
8752179 TGCACCAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
23 10 0.29
24 5 0.15
ACGTcount: A:0.17, C:0.24, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:8793519 original size:18 final size:18
Alignment explanation
Indices: 8793496--8793539 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
8793486 CCAGTTTGAT
8793496 TTAAAGTACAAAACTTTA
1 TTAAAGTACAAAACTTTA
8793514 TTAAAGTACAAAACTTTA
1 TTAAAGTACAAAACTTTA
8793532 TTAAAGTA
1 TTAAAGTA
8793540 GATTTCTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.34
Consensus pattern (18 bp):
TTAAAGTACAAAACTTTA
Found at i:8794680 original size:31 final size:32
Alignment explanation
Indices: 8794627--8794690 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
8794617 TTATTTCGTC
*
8794627 ACTAAATATTTTTTTATAAATTT-TTACTGTG
1 ACTAAATATTTTGTTATAAATTTATTACTGTG
* *
8794658 ACTAAATAATTTTGTTA-CAATTTATTATTGTG
1 ACTAAAT-ATTTTGTTATAAATTTATTACTGTG
8794690 A
1 A
8794691 AAGAATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 12 0.43
32 16 0.57
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.52
Consensus pattern (32 bp):
ACTAAATATTTTGTTATAAATTTATTACTGTG
Found at i:8794868 original size:26 final size:26
Alignment explanation
Indices: 8794839--8794918 Score: 153
Period size: 26 Copynumber: 3.1 Consensus size: 26
8794829 TTAACGTGTT
8794839 ATTGTGACTAAATCATTTTGTTACAA
1 ATTGTGACTAAATCATTTTGTTACAA
8794865 ATTGTGACTAAATCATTTTGTTACAA
1 ATTGTGACTAAATCATTTTGTTACAA
8794891 ATTGTGACTAAATCATTTTGTTA-AA
1 ATTGTGACTAAATCATTTTGTTACAA
8794916 ATT
1 ATT
8794919 TATTATTGTA
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 5 0.09
26 49 0.91
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.44
Consensus pattern (26 bp):
ATTGTGACTAAATCATTTTGTTACAA
Found at i:8794975 original size:33 final size:33
Alignment explanation
Indices: 8794933--8795022 Score: 85
Period size: 33 Copynumber: 2.8 Consensus size: 33
8794923 ATTGTAAAAG
*
8794933 AATATTATTTGTCACAATTTTTTATAATGA-GA
1 AATAATATTTGTCACAATTTTTTATAATGATGA
* * * * ** *
8794965 AATTAATATTTGTTATAAATTATTATTTTGATTA
1 AA-TAATATTTGTCACAATTTTTTATAATGATGA
8794999 AATAA-ATTTGTCACAATTTTTTAT
1 AATAATATTTGTCACAATTTTTTAT
8795023 TTTGACCAAA
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
32 17 0.39
33 24 0.55
34 3 0.07
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (33 bp):
AATAATATTTGTCACAATTTTTTATAATGATGA
Found at i:8795034 original size:32 final size:32
Alignment explanation
Indices: 8794933--8795034 Score: 89
Period size: 32 Copynumber: 3.1 Consensus size: 32
8794923 ATTGTAAAAG
* ** *
8794933 AATATTATTTGTCACAATTTTTTATAATGAGA
1 AATAATATTTGTCACAATTTTTTATTTTGACA
* * * * *
8794965 AATTAATATTTGTTATAAATTATTATTTTGATTA
1 AA-TAATATTTGTCACAATTTTTTATTTTGA-CA
8794999 AATAA-ATTTGTCACAATTTTTTATTTTGACCA
1 AATAATATTTGTCACAATTTTTTATTTTGA-CA
8795031 AATA
1 AATA
8795035 CTGTGACAAA
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
32 27 0.50
33 24 0.44
34 3 0.06
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.49
Consensus pattern (32 bp):
AATAATATTTGTCACAATTTTTTATTTTGACA
Found at i:8795235 original size:29 final size:29
Alignment explanation
Indices: 8795177--8795298 Score: 131
Period size: 29 Copynumber: 4.2 Consensus size: 29
8795167 TAACGAAGAA
* * * *
8795177 AAAACTTTTTTTCAATTAAAATGAACGAC
1 AAAACTTTTTCTCAATTACAATAAAGGAC
** *
8795206 AAATTTTTTTCTCAATTACAACAAAGGAC
1 AAAACTTTTTCTCAATTACAATAAAGGAC
* *
8795235 AAAACGTTTTCTCAATTACAATGAAGGA-
1 AAAACTTTTTCTCAATTACAATAAAGGAC
*
8795263 AACAACTTTTTGTCAATTACAATAAAGG-C
1 AA-AACTTTTTCTCAATTACAATAAAGGAC
8795292 AAAACTT
1 AAAACTT
8795299 CTCACAAGTT
Statistics
Matches: 76, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
28 7 0.09
29 69 0.91
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (29 bp):
AAAACTTTTTCTCAATTACAATAAAGGAC
Found at i:8800100 original size:23 final size:23
Alignment explanation
Indices: 8800048--8800130 Score: 91
Period size: 23 Copynumber: 3.7 Consensus size: 23
8800038 AGAACCCGTG
*
8800048 GGGGGTATCGATTCCCC-T--AA
1 GGGGGAATCGATTCCCCTTCAAA
*
8800068 GGGGGCAATCGGTTCCCCTTCAAA
1 GGGGG-AATCGATTCCCCTTCAAA
* *
8800092 GGGGGAATCGATTTCCCTTCAAG
1 GGGGGAATCGATTCCCCTTCAAA
*
8800115 GGGGGCATCGATTCCC
1 GGGGGAATCGATTCCC
8800131 TCTGCACCAA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
20 5 0.10
21 10 0.19
22 1 0.02
23 29 0.56
24 7 0.13
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (23 bp):
GGGGGAATCGATTCCCCTTCAAA
Found at i:8801805 original size:53 final size:53
Alignment explanation
Indices: 8801741--8801851 Score: 152
Period size: 53 Copynumber: 2.1 Consensus size: 53
8801731 ATGTGTGTAC
* * * *
8801741 TTTCGACACTATGTGTGCATCC-ATGGTATTCATAATGGGTTTATGGATTATCA
1 TTTCGACACTATGTGTGCA-CCTATGATATTCATAATGAGTTTATGAATTACCA
* *
8801794 TTTCGGCACTATGTGTGCACCTATGATATTCATAATGAGTTTGTGAATTACCA
1 TTTCGACACTATGTGTGCACCTATGATATTCATAATGAGTTTATGAATTACCA
8801847 TTTCG
1 TTTCG
8801852 TTACCTTAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
52 2 0.04
53 49 0.96
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (53 bp):
TTTCGACACTATGTGTGCACCTATGATATTCATAATGAGTTTATGAATTACCA
Found at i:8802933 original size:22 final size:22
Alignment explanation
Indices: 8802906--8802990 Score: 143
Period size: 22 Copynumber: 3.9 Consensus size: 22
8802896 GCGAATTTCG
8802906 GAATTCGCCAATTTCGCAAGTC
1 GAATTCGCCAATTTCGCAAGTC
8802928 GAATTCGCCAATTTCGCAAGTC
1 GAATTCGCCAATTTCGCAAGTC
*
8802950 GAATTCTCCAATTTCGCAAGTC
1 GAATTCGCCAATTTCGCAAGTC
* *
8802972 AAATTCACCAATTTCGCAA
1 GAATTCGCCAATTTCGCAA
8802991 CTCAATTACC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 60 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (22 bp):
GAATTCGCCAATTTCGCAAGTC
Found at i:8802995 original size:22 final size:22
Alignment explanation
Indices: 8802906--8803003 Score: 137
Period size: 22 Copynumber: 4.5 Consensus size: 22
8802896 GCGAATTTCG
*
8802906 GAATTCGCCAATTTCGCAAGTC
1 GAATTCACCAATTTCGCAAGTC
*
8802928 GAATTCGCCAATTTCGCAAGTC
1 GAATTCACCAATTTCGCAAGTC
*
8802950 GAATTCTCCAATTTCGCAAGTC
1 GAATTCACCAATTTCGCAAGTC
* *
8802972 AAATTCACCAATTTCGCAACTC
1 GAATTCACCAATTTCGCAAGTC
8802994 -AATT-ACCAAT
1 GAATTCACCAAT
8803004 ATAGGTAAAC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
20 6 0.08
21 4 0.06
22 62 0.86
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.29
Consensus pattern (22 bp):
GAATTCACCAATTTCGCAAGTC
Found at i:8804990 original size:3 final size:3
Alignment explanation
Indices: 8804984--8805039 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
8804974 TCTTCTTAAG
8804984 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8805032 ATA ATA AT
1 ATA ATA AT
8805040 TAAGCATAGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:8806080 original size:22 final size:22
Alignment explanation
Indices: 8806054--8806096 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
8806044 TTTGGTTTTC
* *
8806054 ATTTTTAGTAT-TTTTATATTT
1 ATTTTTTGTATATTTTAAATTT
8806075 ATTTTTTGTATATTTTAAATTT
1 ATTTTTTGTATATTTTAAATTT
8806097 TAAATTTAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.70
Consensus pattern (22 bp):
ATTTTTTGTATATTTTAAATTT
Found at i:8806098 original size:23 final size:22
Alignment explanation
Indices: 8806049--8806098 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
8806039 AGAAATTTGG
*
8806049 TTTTCATTTTTAGTATTTTTATA
1 TTTT-ATTTTTAGTATTTTTAAA
*
8806072 -TTTATTTTTTGTATATTTTAAA
1 TTTTATTTTTAGTAT-TTTTAAA
8806094 TTTTA
1 TTTTA
8806099 AATTTAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 10 0.43
22 9 0.39
23 4 0.17
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (22 bp):
TTTTATTTTTAGTATTTTTAAA
Found at i:8806150 original size:23 final size:22
Alignment explanation
Indices: 8806108--8806153 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
8806098 AAATTTAGAA
8806108 TAAATATTTTTCAATAAAAAAT
1 TAAATATTTTTCAATAAAAAAT
8806130 TAAATCATTTATT-AATTAAAAAAT
1 TAAAT-ATTT-TTCAA-TAAAAAAT
8806154 ATTTTTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 5 0.24
23 6 0.29
24 10 0.48
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAATATTTTTCAATAAAAAAT
Found at i:8808647 original size:19 final size:19
Alignment explanation
Indices: 8808623--8808668 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
8808613 AGTTTGATTA
8808623 AAAGTAGAAAACTTTTATT
1 AAAGTAGAAAACTTTTATT
8808642 AAAGTAGAAAACTTTTATT
1 AAAGTAGAAAACTTTTATT
8808661 AAAGTAGA
1 AAAGTAGA
8808669 TTTCTACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.50, C:0.04, G:0.13, T:0.33
Consensus pattern (19 bp):
AAAGTAGAAAACTTTTATT
Found at i:8809571 original size:65 final size:65
Alignment explanation
Indices: 8809434--8809593 Score: 220
Period size: 65 Copynumber: 2.5 Consensus size: 65
8809424 TGCAATAAGA
* *
8809434 GTGCATCGATGCATAAAATGCATTTGATG-TTTCAAAATAGCCTGAGTGCATCGATGCATGGTTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCCTGAGTGCATCGATGCATAGTTG
* *
8809498 GTGTATCGATGCATCAAATGCATTCGATGTTTTCATAAA-A-CTCTGAGTGCATCGATGCATAGT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCA-AAATAGC-CTGAGTGCATCGATGCATAGT
8809561 AT-
64 -TG
*
8809563 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
8809594 CAATTTATTC
Statistics
Matches: 86, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
64 27 0.31
65 55 0.64
66 4 0.05
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCCTGAGTGCATCGATGCATAGTTG
Found at i:8809632 original size:65 final size:65
Alignment explanation
Indices: 8809434--8809640 Score: 196
Period size: 65 Copynumber: 3.2 Consensus size: 65
8809424 TGCAATAAGA
* * *
8809434 GTGCATCGATGCATAAAATGCATTTGATGTTTCAA--AATAGC-CTGAGTGCATCGATGCATGGT
1 GTGCATCGATGCATAAAATGCATTCGATG-TTCAATTTATA-CAATGAGTGCATCGATGCATGGT
8809496 TG
64 TG
* * * * *
8809498 GTGTATCGATGCATCAAATGCATTCGATGTT---TTCATAAAACTCTGAGTGCATCGATGCATAG
1 GTGCATCGATGCATAAAATGCATTCGATGTTCAATTTATACAA---TGAGTGCATCGATGCATGG
8809560 TAT-
63 T-TG
* *
8809563 GTGCATCGATGCATGAAATGCATTCGATGTTCAATTTATTCAATG-GTGCATCGATGCATGGATT
1 GTGCATCGATGCATAAAATGCATTCGATGTTCAATTTATACAATGAGTGCATCGATGCATGG-TT
8809627 G
65 G
*
8809628 GTGCATCGGTGCA
1 GTGCATCGATGCA
8809641 CACTTTGAAA
Statistics
Matches: 117, Mismatches: 14, Indels: 23
0.76 0.09 0.15
Matches are distributed among these distances:
62 3 0.03
63 2 0.02
64 42 0.36
65 63 0.54
66 1 0.01
68 6 0.05
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTCAATTTATACAATGAGTGCATCGATGCATGGTTG
Found at i:8809898 original size:33 final size:34
Alignment explanation
Indices: 8809832--8809901 Score: 106
Period size: 35 Copynumber: 2.1 Consensus size: 34
8809822 CCAAAAAAGA
* *
8809832 AGAGTTGGATTGGGACTCAAATACTAGTCTAAAAT
1 AGAGTTGAATTAGGACTCAAATA-TAGTCTAAAAT
8809867 AGAGTTGAATTAGGACTCAAAT-TAGTCTAAAAT
1 AGAGTTGAATTAGGACTCAAATATAGTCTAAAAT
8809900 AG
1 AG
8809902 GGTTTTTTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 13 0.39
35 20 0.61
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (34 bp):
AGAGTTGAATTAGGACTCAAATATAGTCTAAAAT
Found at i:8810552 original size:26 final size:26
Alignment explanation
Indices: 8810522--8810588 Score: 62
Period size: 26 Copynumber: 2.6 Consensus size: 26
8810512 TATTTTTATG
*
8810522 ATTATTTCTTTATTTACGTAATATAT
1 ATTATTTCTTTATTTACATAATATAT
* ** * * *
8810548 CTTATAACTTTATATATATTATATAT
1 ATTATTTCTTTATTTACATAATATAT
*
8810574 ATTATTTTTTTATTT
1 ATTATTTCTTTATTT
8810589 TTTGTTTTTT
Statistics
Matches: 29, Mismatches: 12, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.61
Consensus pattern (26 bp):
ATTATTTCTTTATTTACATAATATAT
Found at i:8810588 original size:8 final size:8
Alignment explanation
Indices: 8810575--8810617 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
8810565 ATTATATATA
8810575 TTATTTTT
1 TTATTTTT
8810583 TTATTTTT
1 TTATTTTT
8810591 TGT-TTTTT
1 T-TATTTTT
*
8810599 TTATTCTT
1 TTATTTTT
*
8810607 ATATTTTT
1 TTATTTTT
8810615 TTA
1 TTA
8810618 AAATCATGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 1 0.03
8 27 0.93
9 1 0.03
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.81
Consensus pattern (8 bp):
TTATTTTT
Found at i:8810742 original size:41 final size:38
Alignment explanation
Indices: 8810689--8810764 Score: 107
Period size: 41 Copynumber: 1.9 Consensus size: 38
8810679 GGGCCATTTG
*
8810689 TTTTTGTTTTATTTCTAACTAAAGTCTCTCCCACTTTCCTC
1 TTTTTGTCTTATTTCTAACTAAAG-C-C-CCCACTTTCCTC
*
8810730 TTTTTGTCTTATTTCTGACTAAAGCCCCCACTTTC
1 TTTTTGTCTTATTTCTAACTAAAGCCCCCACTTTC
8810765 GGTGAAGTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 9 0.27
39 1 0.03
40 1 0.03
41 22 0.67
ACGTcount: A:0.17, C:0.28, G:0.07, T:0.49
Consensus pattern (38 bp):
TTTTTGTCTTATTTCTAACTAAAGCCCCCACTTTCCTC
Found at i:8810829 original size:35 final size:38
Alignment explanation
Indices: 8810780--8810854 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 38
8810770 AGTGAGAGGG
* *
8810780 TAGCTTTTCTATTTT-TAAATA-TTTGTTGTATATATA
1 TAGCTTATCTATTTTATAAATACTTTGATGTATATATA
*
8810816 TAGCTTAT-TATTTTATTAATACTTTGATGTATATATA
1 TAGCTTATCTATTTTATAAATACTTTGATGTATATATA
8810853 TA
1 TA
8810855 TATATATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 6 0.18
36 12 0.35
37 16 0.47
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (38 bp):
TAGCTTATCTATTTTATAAATACTTTGATGTATATATA
Found at i:8810935 original size:9 final size:9
Alignment explanation
Indices: 8810923--8810947 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8810913 CCTTATCTTA
8810923 TTTATTTAT
1 TTTATTTAT
8810932 TTTATTTAT
1 TTTATTTAT
8810941 TTTATTT
1 TTTATTT
8810948 TTTCCCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTAT
Found at i:8810946 original size:14 final size:14
Alignment explanation
Indices: 8810915--8810985 Score: 58
Period size: 14 Copynumber: 5.1 Consensus size: 14
8810905 TATTTTTTCC
*
8810915 TTATCTTATTTA-T
1 TTATTTTATTTATT
8810928 TTATTTTATTTATT
1 TTATTTTATTTATT
**
8810942 TTATTTT-TTCCCTT
1 TTATTTTATT-TATT
8810956 TTATTTTATTCT-TT
1 TTATTTTATT-TATT
* *
8810970 TTATCTTATTTGTT
1 TTATTTTATTTATT
8810984 TT
1 TT
8810986 CTTTACCTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
13 14 0.29
14 32 0.65
15 3 0.06
ACGTcount: A:0.15, C:0.08, G:0.01, T:0.75
Consensus pattern (14 bp):
TTATTTTATTTATT
Found at i:8819619 original size:38 final size:38
Alignment explanation
Indices: 8819568--8819643 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
8819558 CTAATACTGG
8819568 ATCTGCTCGAAGAGTTCGATGAAGTCACTTTCCACTAT
1 ATCTGCTCGAAGAGTTCGATGAAGTCACTTTCCACTAT
8819606 ATCTGCTCGAAGAGTTCGATGAAGTCACTTTCCACTAT
1 ATCTGCTCGAAGAGTTCGATGAAGTCACTTTCCACTAT
8819644 GTGCCAAGGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (38 bp):
ATCTGCTCGAAGAGTTCGATGAAGTCACTTTCCACTAT
Found at i:8821166 original size:16 final size:17
Alignment explanation
Indices: 8821145--8821185 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
8821135 GCCCTAAATT
*
8821145 GAAAAAATGAA-AAAGA
1 GAAAAAATGAACAAAAA
8821161 GAAAAAA-GAACAAAAA
1 GAAAAAATGAACAAAAA
8821177 GAACAAAAT
1 GAA-AAAAT
8821186 AAGGTGGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 3 0.14
16 14 0.67
17 4 0.19
ACGTcount: A:0.76, C:0.05, G:0.15, T:0.05
Consensus pattern (17 bp):
GAAAAAATGAACAAAAA
Found at i:8822312 original size:106 final size:105
Alignment explanation
Indices: 8822174--8822801 Score: 751
Period size: 106 Copynumber: 6.0 Consensus size: 105
8822164 ATATCGTGCC
* *
8822174 ACTCGGGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGAC-ACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
8822239 AATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
65 AATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
8822280 ACTCAAGAACACACAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAATCTCCT
1 ACTCGAG-ACACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* * *
8822345 AATTTTAGAG-C-----CAA--T---AGCGAATGATATTAG
65 AATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
* *
8822375 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGATTGTCAACAAACAATTTCCC
1 ACTCGAGAC-ACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* * * *
8822440 AATTTCAGGGTCAATTTTAACTTCATATCGAAGGATATTGG
65 AATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
* *
8822481 ACTCGAGAC-CACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAATAATTTCCCA
1 ACTCGAGACACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCA
* * * *
8822545 ATTTTAGAGCCAATTTCAACTTCACAACAAAGGATATTGG
66 ATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
*
8822585 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCC
1 ACTCGAGAC-ACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* * * *
8822650 AATTTTAGGGTCAATTTCAACTTCACATCGAAGGATATTAG
65 AATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * * *
8822691 ACTCAAGATAGCACAAGCTCAACTTCACAGCGAA-GGAGCGGTTGGCTGTCAACAAACAATTTTC
1 ACTCGAGACA-CACAAGTTCAACTTCACAACGAAGGGA-CGGCTGGTTGTCAACAAACAATTTCC
* * * ** * *
8822755 CAGTTCCAGAGCCAATTTCAACTTCATGGTGGAGGATATTGG
64 CAATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
8822797 ACTCG
1 ACTCG
8822802 GAACAATACA
Statistics
Matches: 449, Mismatches: 56, Indels: 34
0.83 0.10 0.06
Matches are distributed among these distances:
94 2 0.00
95 79 0.18
96 1 0.00
98 1 0.00
100 3 0.01
101 2 0.00
103 1 0.00
104 93 0.21
105 5 0.01
106 260 0.58
107 2 0.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (105 bp):
ACTCGAGACACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCA
ATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:8822648 original size:210 final size:211
Alignment explanation
Indices: 8822367--8822780 Score: 616
Period size: 210 Copynumber: 2.0 Consensus size: 211
8822357 AATAGCGAAT
8822367 GATATTAGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGATTGTCAACAAAC
1 GATATTAGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGATTGTCAACAAAC
* * *
8822432 AATTTCCCAATTTCAGGGTCAATTTTAACTTCATATCGAAGGATATTGGACTC-GAGACCACAAG
66 AATTTCCCAATTTCAGGGTCAATTTCAACTTCACATCGAAGGATATTAGACTCAGAGACCACAAG
* * * * **
8822496 TTCAACTTCACAATGAAGG-GACGGCTGGTTGTCAACAAATAATTTCCCAATTTTAGAGCCAATT
131 CTCAACTTCACAACGAAGGAG-CGGCTGGCTGTCAACAAACAATTTCCCAATTCCAGAGCCAATT
8822560 TCAACTTCACAACAAAG
195 TCAACTTCACAACAAAG
* * * *
8822577 GATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAAT
1 GATATTAGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGATTGTCAACAAAC
* * *
8822642 AATTTCCCAATTTTAGGGTCAATTTCAACTTCACATCGAAGGATATTAGACTCAAGATAGCACAA
66 AATTTCCCAATTTCAGGGTCAATTTCAACTTCACATCGAAGGATATTAGACTC-AGAGACCACAA
* * * *
8822707 GCTCAACTTCACAGCGAAGGAGCGGTTGGCTGTCAACAAACAATTTTCCAGTTCCAGAGCCAATT
130 GCTCAACTTCACAACGAAGGAGCGGCTGGCTGTCAACAAACAATTTCCCAATTCCAGAGCCAATT
8822772 TCAACTTCA
195 TCAACTTCA
8822781 TGGTGGAGGA
Statistics
Matches: 181, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
210 110 0.61
212 70 0.39
213 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (211 bp):
GATATTAGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGATTGTCAACAAAC
AATTTCCCAATTTCAGGGTCAATTTCAACTTCACATCGAAGGATATTAGACTCAGAGACCACAAG
CTCAACTTCACAACGAAGGAGCGGCTGGCTGTCAACAAACAATTTCCCAATTCCAGAGCCAATTT
CAACTTCACAACAAAG
Found at i:8823331 original size:35 final size:35
Alignment explanation
Indices: 8823285--8823356 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
8823275 CCAAAAAAGA
*
8823285 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTGGATTAGGACTCAAATACTAATCTAAAAT
8823320 AGAGTTGGATTAGGACTCAAATACTAATCTAAAAT
1 AGAGTTGGATTAGGACTCAAATACTAATCTAAAAT
8823355 AG
1 AG
8823357 GGTTTTTAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (35 bp):
AGAGTTGGATTAGGACTCAAATACTAATCTAAAAT
Found at i:8823829 original size:2 final size:2
Alignment explanation
Indices: 8823824--8823854 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8823814 TATATTTTAT
8823824 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8823855 TTCTTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8823869 original size:57 final size:57
Alignment explanation
Indices: 8823763--8823897 Score: 134
Period size: 57 Copynumber: 2.3 Consensus size: 57
8823753 ATTCATGCTA
* * * *
8823763 TTATTATACGTATATATATATATTTTAAATTATTTTCATTTGATTTTTTAC-TAT-ATT
1 TTATTATA--TATATATATATATTATAAATTATTTTCATTTAATATTTTACTTATAAGT
*
8823820 TTATTATATATATATATATATATATATATATATATTTC-TTTAATATTTTACTTATAAGT
1 TTATTATATATATATATATAT-TATAAAT-TAT-TTTCATTTAATATTTTACTTATAAGT
*
8823879 CTATTAT-TACTATATATAT
1 TTATTATATA-TATATATAT
8823898 TGTAATTATC
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
55 13 0.20
56 5 0.08
57 22 0.33
58 9 0.14
59 17 0.26
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (57 bp):
TTATTATATATATATATATATTATAAATTATTTTCATTTAATATTTTACTTATAAGT
Found at i:8824349 original size:2 final size:2
Alignment explanation
Indices: 8824342--8824368 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8824332 TACTTTGATG
8824342 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8824369 TTTTTCCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8833005 original size:65 final size:65
Alignment explanation
Indices: 8832872--8833031 Score: 202
Period size: 65 Copynumber: 2.5 Consensus size: 65
8832862 TGCACTAAGA
* *
8832872 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAAAATAGCCTGAGTGCATTGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCCTGAGTGCATCGATGCATAGCTG
* * *
8832936 GTGCATCGATGCATCAAATACATTCAATGTTTTCATAAA-A-CTCTGAGTGCATCGATGCATAG-
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCA-AAATAGC-CTGAGTGCATCGATGCATAGC
*
8832998 TAT
64 T-G
*
8833001 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
8833032 CAATTTATTC
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
64 28 0.34
65 52 0.63
66 3 0.04
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCCTGAGTGCATCGATGCATAGCTG
Found at i:8837730 original size:21 final size:20
Alignment explanation
Indices: 8837701--8837739 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8837691 TAAAGCATTA
*
8837701 AACATCATAAACAAAACAAAT
1 AACAGCATAAA-AAAACAAAT
*
8837722 AACAGCATACAAAAACAA
1 AACAGCATAAAAAAACAA
8837740 CCATCCATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.67, C:0.21, G:0.03, T:0.10
Consensus pattern (20 bp):
AACAGCATAAAAAAACAAAT
Found at i:8839374 original size:42 final size:40
Alignment explanation
Indices: 8839300--8839389 Score: 117
Period size: 42 Copynumber: 2.2 Consensus size: 40
8839290 TAATATTTAT
* *
8839300 ATTTGTGACGTAAACATTTTGTCAATAGTCTTAGATGGTG
1 ATTTGTGACATAAACATTTTGTCAATAATCTTAGATGGTG
* * *
8839340 ATTTGTGACAATAATACTTTTTGTCACTAATCTTAGTTGGTG
1 ATTTGTGAC-ATAA-ACATTTTGTCAATAATCTTAGATGGTG
8839382 ATTTGTGA
1 ATTTGTGA
8839390 TGACAGTTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 9 0.21
41 3 0.07
42 31 0.72
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (40 bp):
ATTTGTGACATAAACATTTTGTCAATAATCTTAGATGGTG
Found at i:8843296 original size:21 final size:21
Alignment explanation
Indices: 8843270--8843320 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
8843260 GTGAACAGTG
* *
8843270 AGTGTATCGGTACACTGTAGT
1 AGTGTATCGGTACACTATAGC
*
8843291 AGTGTAACGGTACACTATAGC
1 AGTGTATCGGTACACTATAGC
8843312 AGTGTATCG
1 AGTGTATCG
8843321 ATACGCCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (21 bp):
AGTGTATCGGTACACTATAGC
Found at i:8843391 original size:20 final size:20
Alignment explanation
Indices: 8843366--8843412 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
8843356 TACTGTTCAT
8843366 TACTGTTCACACAGTATTGG
1 TACTGTTCACACAGTATTGG
8843386 TACTGTTCACACAGTATTGG
1 TACTGTTCACACAGTATTGG
*
8843406 TATTGTT
1 TACTGTT
8843413 TATTATTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (20 bp):
TACTGTTCACACAGTATTGG
Found at i:8843693 original size:18 final size:18
Alignment explanation
Indices: 8843642--8843699 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
8843632 ATATTTAATG
* *
8843642 AAAAATATACCAATTGTT
1 AAAAAGATATCAATTGTT
*
8843660 AACAAAATGATTTCAATTGTT
1 -A-AAAA-GATATCAATTGTT
8843681 AAAAAGATATCAATTGTT
1 AAAAAGATATCAATTGTT
8843699 A
1 A
8843700 CCAATTGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 13 0.39
19 5 0.15
20 5 0.15
21 10 0.30
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (18 bp):
AAAAAGATATCAATTGTT
Found at i:8845744 original size:33 final size:34
Alignment explanation
Indices: 8845707--8845777 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
8845697 CCTTTACAAC
*
8845707 TCCCTAG-TTTTTCACGGGATAAACTAGAACCTT
1 TCCCTAGCTTTTACACGGGATAAACTAGAACCTT
* ** *
8845740 TCCCTAGCTTTTACACGGGCTAAGTTATAACCTT
1 TCCCTAGCTTTTACACGGGATAAACTAGAACCTT
8845774 TCCC
1 TCCC
8845778 ATTTACAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 7 0.22
34 25 0.78
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (34 bp):
TCCCTAGCTTTTACACGGGATAAACTAGAACCTT
Found at i:8848554 original size:41 final size:42
Alignment explanation
Indices: 8848509--8848590 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 42
8848499 TAACGGCATT
* * * *
8848509 TTTCATAAACGTCGCTAAAAATCA-TACTTTAGTGGTGTTTA
1 TTTCACAAACATCGCTAAAAATAAGTACTTTAGTGGCGTTTA
* *
8848550 TTTCACAAACATCGCTACATATAAGTACTTTAGTGGCGTTT
1 TTTCACAAACATCGCTAAAAATAAGTACTTTAGTGGCGTTT
8848591 TTTAAACCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 19 0.56
42 15 0.44
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (42 bp):
TTTCACAAACATCGCTAAAAATAAGTACTTTAGTGGCGTTTA
Found at i:8848853 original size:42 final size:43
Alignment explanation
Indices: 8848760--8848865 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 43
8848750 TGGGATTTTT
* *
8848760 TTTAAAAAACACCGCAATA-TGTTGAACTGTTAGTGGCGTTTTG
1 TTTAAAAAACACCGCAATAGT-TTGAACTGATAGTGGCGTTTGG
* **
8848803 TTT-GAAAACACCGCAATAGTTTGTTCT-ATAGTGGCGTTTGG
1 TTTAAAAAACACCGCAATAGTTTGAACTGATAGTGGCGTTTGG
*
8848844 TTTAAAAAACGCCGCAA-AGTTT
1 TTTAAAAAACACCGCAATAGTTT
8848866 TATAAATACC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 20 0.37
42 30 0.56
43 4 0.07
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (43 bp):
TTTAAAAAACACCGCAATAGTTTGAACTGATAGTGGCGTTTGG
Found at i:8858510 original size:2 final size:2
Alignment explanation
Indices: 8858503--8858611 Score: 88
Period size: 2 Copynumber: 58.0 Consensus size: 2
8858493 TTGGGCCGGG
* * * *
8858503 TA TA TA TA TA TT TA AA T- TA AA TA TA TA AA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
8858543 TA TT TA AA T- TA AA T- TA AA TT TA T- TA -A TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8858580 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8858612 ATAATAATTA
Statistics
Matches: 82, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
1 7 0.09
2 75 0.91
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8858528 original size:15 final size:15
Alignment explanation
Indices: 8858508--8858556 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
8858498 CCGGGTATAT
8858508 ATATATTTAAATTAA
1 ATATATTTAAATTAA
*
8858523 ATATA-TAAATATTATA
1 ATATATTTAA-ATTA-A
8858539 TATATATTTAAATTAA
1 -ATATATTTAAATTAA
8858555 AT
1 AT
8858557 TAAATTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 3 0.11
15 11 0.39
16 2 0.07
17 9 0.32
18 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATTTAAATTAA
Found at i:8858528 original size:17 final size:17
Alignment explanation
Indices: 8858506--8858556 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
8858496 GGCCGGGTAT
8858506 ATATATATTTAAATTAA
1 ATATATATTTAAATTAA
*
8858523 ATATATA---AATATTAT
1 ATATATATTTAA-ATTAA
8858538 ATATATATTTAAATTAA
1 ATATATATTTAAATTAA
8858555 AT
1 AT
8858557 TAAATTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 2 0.07
15 11 0.39
17 13 0.46
18 2 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATATTTAAATTAA
Found at i:8859692 original size:15 final size:15
Alignment explanation
Indices: 8859666--8859706 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
8859656 TAAAGAATAG
8859666 AAATTAAAAATACTAA
1 AAATT-AAAATACTAA
*
8859682 AAATTAAAATACTCA
1 AAATTAAAATACTAA
*
8859697 AAACTAAAAT
1 AAATTAAAAT
8859707 TGATAGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATTAAAATACTAA
Found at i:8861543 original size:33 final size:33
Alignment explanation
Indices: 8861481--8861543 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
8861471 ATGTAAAAGT
* *
8861481 ACACAATAAATGAACACAAACGAACATAAACAA
1 ACACAATAAATGAAAACAAACAAACATAAACAA
* *
8861514 ACACAATAAATGAAAATAAACAAATATAAA
1 ACACAATAAATGAAAACAAACAAACATAAA
8861544 TGAAAATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.67, C:0.16, G:0.05, T:0.13
Consensus pattern (33 bp):
ACACAATAAATGAAAACAAACAAACATAAACAA
Found at i:8864761 original size:49 final size:49
Alignment explanation
Indices: 8864705--8865037 Score: 432
Period size: 49 Copynumber: 6.8 Consensus size: 49
8864695 AATGCCTAAC
* * *
8864705 GGTGTATTTTTGGCAAAAAGGTGCCACTAATTCAAGTTAGATGACAAAT
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGACAAAT
* * * * ***
8864754 GGTGTATTTTTGGCATAAAGGTGCTACTAATGCAAGTTAAATGTTTAAT
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGACAAAT
* * * * *
8864803 GGTGTATTTTTGGTAGAAATGTGCTACTAATGCAAGTTTGATGACAAAT
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGACAAAT
*
8864852 GGTGCATTTTTGGCAGAAAGGTGCCACTTATGCAAGTTAGATGACAAAT
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGACAAAT
* * * * * *
8864901 AGTGCATTTTTGGCAGAAATGTGCCACTAATGCAAGTTAAATGCCTAAC
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGACAAAT
*
8864950 GGTGCATTTTTGGCAGAAAGGTGCCACAAATGCAAGTTAGATGACAAAT
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGACAAAT
* * *
8864999 GGTGCATTTTTGGCAGAAATGTGTCACTAATACAAGTTA
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTA
8865038 AATGCATAAC
Statistics
Matches: 245, Mismatches: 39, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
49 245 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (49 bp):
GGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGACAAAT
Found at i:8864959 original size:147 final size:147
Alignment explanation
Indices: 8864705--8865055 Score: 479
Period size: 147 Copynumber: 2.4 Consensus size: 147
8864695 AATGCCTAAC
* * * * * *
8864705 GGTGTATTTTTGGCAAAAAGGTGCCACTAATTCAAGTTAGATGACAAATGGTGTATTTTTGGCAT
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATACAAGTTAGATGACAAATAGTGCATTTTTGGCAG
* ** * * * * * *
8864770 AAAGGTGCTACTAATGCAAGTTAAATGTTTAATGGTGTATTTTTGGTAGAAATGTGCTACTAATG
66 AAAGGTGCCACTAATGCAAGTTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACAAATG
*
8864835 CAAGTTTGATGACAAAT
131 CAAGTTAGATGACAAAT
* *
8864852 GGTGCATTTTTGGCAGAAAGGTGCCACTTATGCAAGTTAGATGACAAATAGTGCATTTTTGGCAG
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATACAAGTTAGATGACAAATAGTGCATTTTTGGCAG
*
8864917 AAATGTGCCACTAATGCAAGTTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACAAATG
66 AAAGGTGCCACTAATGCAAGTTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACAAATG
8864982 CAAGTTAGATGACAAAT
131 CAAGTTAGATGACAAAT
* * * *
8864999 GGTGCATTTTTGGCAGAAATGTGTCACTAATACAAGTTAAATG-CATAACAGTGCATT
1 GGTGCATTTTTGGCAGAAAGGTGCCACTAATACAAGTTAGATGACA-AATAGTGCATT
8865056 ATCAGTATGA
Statistics
Matches: 179, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
146 2 0.01
147 177 0.99
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.31
Consensus pattern (147 bp):
GGTGCATTTTTGGCAGAAAGGTGCCACTAATACAAGTTAGATGACAAATAGTGCATTTTTGGCAG
AAAGGTGCCACTAATGCAAGTTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACAAATG
CAAGTTAGATGACAAAT
Found at i:8865093 original size:46 final size:46
Alignment explanation
Indices: 8865037--8865185 Score: 131
Period size: 46 Copynumber: 3.2 Consensus size: 46
8865027 AATACAAGTT
* * * *
8865037 AAATGCATAACAGTGCATTATC-AGTATGAAATGACGACGTAAATGA
1 AAATGCATAACAGTACATTATCGA-CATAAAATGACGACATAAATGA
* * * *
8865083 AAATGTATAACGGTACATTATCGACATAAAATGATGCCATAAATGA
1 AAATGCATAACAGTACATTATCGACATAAAATGACGACATAAATGA
* * * * * *
8865129 AAATGCATAACAGTTCATTATAGGCATGAAAGGA-TACCATAAATGA
1 AAATGCATAACAGTACATTATCGACATAAAATGACGA-CATAAATGA
*
8865175 AAATACATAAC
1 AAATGCATAAC
8865186 GGTGTGTTAA
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
46 82 0.99
47 1 0.01
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.24
Consensus pattern (46 bp):
AAATGCATAACAGTACATTATCGACATAAAATGACGACATAAATGA
Found at i:8871041 original size:49 final size:49
Alignment explanation
Indices: 8870984--8871237 Score: 220
Period size: 49 Copynumber: 5.4 Consensus size: 49
8870974 AAAATGAAAT
* * *
8870984 TTAAATGCCTAACGGTGCATTTTTGGCAGAAATGTGTCATTAATGCAAG
1 TTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAG
* * *
8871033 TTAAATGCCTAACGATGCATTTTTGGCAAAAAGGTGCCGCTAATGCAAG
1 TTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAG
* * * * * *
8871082 TTAGATGAC-AA--ATG-A----T-GCAAAAAGGTGTCGCTAATGCAAG
1 TTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAG
* * * * ** *
8871122 TTATATGACAAAGGGTGTGTTTTTGGCAGAAAGGTGCCACTAAAGCAAG
1 TTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAG
* * * *
8871171 TTAAATGCCTAACAGTGCATTTTTGGTAGAAATGTGCCACTAATGCGAG
1 TTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAG
* *
8871220 TTAAATGCATAACAGTGC
1 TTAAATGCCTAACGGTGC
8871238 CTTATCAGCA
Statistics
Matches: 168, Mismatches: 28, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
40 31 0.18
41 3 0.02
43 2 0.01
45 1 0.01
46 3 0.02
48 3 0.02
49 125 0.74
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (49 bp):
TTAAATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAG
Found at i:8871102 original size:40 final size:40
Alignment explanation
Indices: 8871058--8871133 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
8871048 TGCATTTTTG
8871058 GCAAAAAGGTGCCGCTAATGCAAGTTAGATGACAAATGAT
1 GCAAAAAGGTGCCGCTAATGCAAGTTAGATGACAAATGAT
* *
8871098 GCAAAAAGGTGTCGCTAATGCAAGTTATATGACAAA
1 GCAAAAAGGTGCCGCTAATGCAAGTTAGATGACAAA
8871134 GGGTGTGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (40 bp):
GCAAAAAGGTGCCGCTAATGCAAGTTAGATGACAAATGAT
Found at i:8871278 original size:46 final size:46
Alignment explanation
Indices: 8871222--8871374 Score: 243
Period size: 46 Copynumber: 3.3 Consensus size: 46
8871212 AATGCGAGTT
* * * * *
8871222 AAATGCATAACAGTGCCTTATCAGCATGAAAGGATGACATAAATTA
1 AAATGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGA
*
8871268 AAATGTATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGA
1 AAATGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGA
8871314 AAATGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGA
1 AAATGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGA
*
8871360 AAATACATAACGGTG
1 AAATGCATAACGGTG
8871375 TGTTAACAAC
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 99 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (46 bp):
AAATGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGA
Found at i:8871914 original size:12 final size:12
Alignment explanation
Indices: 8871897--8871926 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8871887 TTGTAGTAAT
8871897 ATGTTTCAAAGA
1 ATGTTTCAAAGA
*
8871909 ATGTTTCAACGA
1 ATGTTTCAAAGA
8871921 ATGTTT
1 ATGTTT
8871927 TATTTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (12 bp):
ATGTTTCAAAGA
Found at i:8877286 original size:116 final size:116
Alignment explanation
Indices: 8877074--8877292 Score: 280
Period size: 116 Copynumber: 1.9 Consensus size: 116
8877064 CAATTTAAGA
* * *
8877074 GTTCACAATGAGAAGAACTCATTAGATGAGGGATAAAAAGTTCCTAATGGGAAGAACTTGTTCAA
1 GTTCACAATGAGAAGAACTCATTAGATAAGGGAGAAAAAGTTCCTAATGAGAAGAACTTGTTCAA
**
8877139 TCTTGGTTCGTCCATCACAAAGAGAGGTGGATCAACATTTCCAATGGAATG
66 TCTTGGCACGTCCATCACAAAGAGAGGTGGATCAACATTTCCAATGGAATG
* * * * *
8877190 GTTCATAATGAGAAGAACTTATCTA-ATAAGGGAGAAGAAGTTCCTAATGAGAAGAGCTTGTTCG
1 GTTCACAATGAGAAGAACTCAT-TAGATAAGGGAGAAAAAGTTCCTAATGAGAAGAACTTGTTCA
* * * *
8877254 GTCTTGGCACTTCCATCACATAA-AGAGTTGGATTAACAT
65 ATCTTGGCACGTCCATCACA-AAGAGAGGTGGATCAACAT
8877293 CACCACTTCA
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
116 83 0.95
117 4 0.05
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (116 bp):
GTTCACAATGAGAAGAACTCATTAGATAAGGGAGAAAAAGTTCCTAATGAGAAGAACTTGTTCAA
TCTTGGCACGTCCATCACAAAGAGAGGTGGATCAACATTTCCAATGGAATG
Found at i:8877722 original size:13 final size:13
Alignment explanation
Indices: 8877706--8877741 Score: 63
Period size: 13 Copynumber: 2.7 Consensus size: 13
8877696 TACTACTGTT
8877706 GTCTACACTAGGC
1 GTCTACACTAGGC
8877719 GTCTACACTAGGC
1 GTCTACACTAGGC
8877732 GTCTAACACT
1 GTCT-ACACT
8877742 CCGATCACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (13 bp):
GTCTACACTAGGC
Found at i:8879643 original size:4 final size:4
Alignment explanation
Indices: 8879634--8879677 Score: 56
Period size: 4 Copynumber: 11.2 Consensus size: 4
8879624 CATGTCTAAG
*
8879634 TATT TATT TATT TATT TATT TA-T T-TT TATT TAAT TATGT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT-T TATT T
8879678 TTCCTTTTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
3 4 0.11
4 27 0.77
5 4 0.11
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:8879663 original size:18 final size:19
Alignment explanation
Indices: 8879640--8879679 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
8879630 TAAGTATTTA
*
8879640 TTTATTTATTTAT-TTATT
1 TTTATTTAATTATGTTATT
8879658 TTTATTTAATTATGTTATT
1 TTTATTTAATTATGTTATT
8879677 TTT
1 TTT
8879680 CCTTTTCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (19 bp):
TTTATTTAATTATGTTATT
Found at i:8879685 original size:26 final size:26
Alignment explanation
Indices: 8879634--8879685 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
8879624 CATGTCTAAG
* *
8879634 TATTTATTTATTTATTTATTTATTTT
1 TATTTAATTATTTATTTATTCATTTT
*
8879660 TATTTAATTATGTTATTT-TTCCTTTT
1 TATTTAATTAT-TTATTTATTCATTTT
8879686 CCTTTTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (26 bp):
TATTTAATTATTTATTTATTCATTTT
Found at i:8879723 original size:20 final size:20
Alignment explanation
Indices: 8879672--8879723 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
8879662 TTTAATTATG
* *
8879672 TTATTTTTCCTTTTCCTTTTT
1 TTATTTTT-ATTTTCCTTTCT
* *
8879693 TTCTTTCTATTTTCCTTTCT
1 TTATTTTTATTTTCCTTTCT
8879713 TTATTTTTATT
1 TTATTTTTATT
8879724 CATCTTTAGA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (20 bp):
TTATTTTTATTTTCCTTTCT
Found at i:8880041 original size:36 final size:37
Alignment explanation
Indices: 8879986--8880075 Score: 101
Period size: 36 Copynumber: 2.4 Consensus size: 37
8879976 AAAGATCCTG
* * * *
8879986 AATTTTGTGTTTCGAGGGAAACTATCTCGAGCGAGAT-
1 AATTTT-TGTTTCAAGGGAAACAACCTCAAGCGAGATA
* *
8880023 AATTTTTTTTTCAAGGGAAACAACCTCAAGTGAGATA
1 AATTTTTGTTTCAAGGGAAACAACCTCAAGCGAGATA
8880060 ACATTTTTGTTTCAAG
1 A-ATTTTTGTTTCAAG
8880076 TGAAGTAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 24 0.55
37 7 0.16
38 13 0.30
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (37 bp):
AATTTTTGTTTCAAGGGAAACAACCTCAAGCGAGATA
Found at i:8880124 original size:103 final size:101
Alignment explanation
Indices: 8879882--8880344 Score: 389
Period size: 103 Copynumber: 4.5 Consensus size: 101
8879872 AACAATATTC
* * *** * * * * *
8879882 AAGTTTATGTTTCAAGGGAAACTGTCTCAATTTAGACAAAATTTGTTTCAAAGGAAACAATCTCA
1 AAGTTTGTGTTTCAAGGGAAACTGTCTCGAGCGAGATAAATTTTTTTTCAAGGGAAACAACCTCA
*
8879947 AGTGAGATAAAAAATTTCTTTTT-GAGTGAAA-AGATC-CTG
66 AGTGAGAT---AAATTT-TTTTTCGAGTGAAATA-ATCTC-A
* * * *
8879986 AATTTTGTGTTTCGAGGGAAACTATCTCGAGCGAGATAATTTTTTTTTCAAGGGAAACAACCTCA
1 AAGTTTGTGTTTCAAGGGAAACTGTCTCGAGCGAGATAAATTTTTTTTCAAGGGAAACAACCTCA
* *
8880051 AGTGAGATAACATTTTTGTTTCAAGTGAAGTAATCTCA
66 AGTGAGATAA-ATTTTT-TTTCGAGTGAAATAATCTCA
* * * * * * *
8880089 AAGTTTGTGTTTCAAAGGAAATTGTCTCAAGCGAGATAAAATTTTGTTCAAGGGAAAAAACCCCA
1 AAGTTTGTGTTTCAAGGGAAACTGTCTCGAGCGAGATAAATTTTTTTTCAAGGGAAACAACCTCA
* * * **
8880154 AGTGAGA-GAATTTTTTTTCGAGTAAAAAAATCTTG
66 AGTGAGATAAATTTTTTTTCGAGTGAAATAATCTCA
* * * *
8880189 AAGTTTGTGTTTCAGGGGGAAACTGTCTCGAGTGAGACAAAATTTTGTTT-AAGGGGAAACAACC
1 AAGTTTGTGTTTCA-AGGGAAACTGTCTCGAGCGAGA-TAAATTTTTTTTCAA-GGGAAACAACC
*
8880253 TCAAGTGAGATAATTTTTTTATTTCGAGTGAAATAATCTCA
63 TCAAGTGAGATAA-ATTTTT-TTTCGAGTGAAATAATCTCA
* * * * * * * *
8880294 AAGTTTGTGTTCCCA-GGAAACTATATCGAGTGAGACAAAATTTGTTTCAAG
1 AAGTTTGTGTTTCAAGGGAAACTGTCTCGAGCGAGATAAATTTTTTTTCAAG
8880345 AAAACAAACT
Statistics
Matches: 288, Mismatches: 59, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
100 28 0.10
101 29 0.10
102 46 0.16
103 91 0.32
104 66 0.23
105 28 0.10
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (101 bp):
AAGTTTGTGTTTCAAGGGAAACTGTCTCGAGCGAGATAAATTTTTTTTCAAGGGAAACAACCTCA
AGTGAGATAAATTTTTTTTCGAGTGAAATAATCTCA
Found at i:8882206 original size:33 final size:34
Alignment explanation
Indices: 8882156--8882238 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 34
8882146 ATTTCAGTGA
*
8882156 TGGTATTAAAGTATCAGTAC-TAAATTCCAA-TGT
1 TGGTATTATAGTATCAGTACTTAAATT-CAATTGT
* * *
8882189 TGGTATTATAGTGTCAGTACTTTAATTCAATTTT
1 TGGTATTATAGTATCAGTACTTAAATTCAATTGT
*
8882223 TGGTATTATAATATCA
1 TGGTATTATAGTATCA
8882239 ATATTAATCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (34 bp):
TGGTATTATAGTATCAGTACTTAAATTCAATTGT
Found at i:8882226 original size:34 final size:33
Alignment explanation
Indices: 8882131--8882238 Score: 101
Period size: 34 Copynumber: 3.2 Consensus size: 33
8882121 AAATAACTGC
* * * * *
8882131 AGTATCAATACTATAATTTCAGTGATGGTATTAA
1 AGTATCAGTACTA-AATTCCAATGTTGGTATTAT
8882165 AGTATCAGTACTAAATTCCAATGTTGGTATTAT
1 AGTATCAGTACTAAATTCCAATGTTGGTATTAT
* * *
8882198 AGTGTCAGTACTTTAATT-CAATTTTTGGTATTAT
1 AGTATCAGTAC-TAAATTCCAA-TGTTGGTATTAT
*
8882232 AATATCA
1 AGTATCA
8882239 ATATTAATCT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
33 29 0.47
34 33 0.53
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (33 bp):
AGTATCAGTACTAAATTCCAATGTTGGTATTAT
Found at i:8889279 original size:40 final size:40
Alignment explanation
Indices: 8889222--8889303 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
8889212 TGCAGGTTTA
*
8889222 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGATGTATATGGTGGGCACGACCTTATGTG
* *
8889262 TAATACAGTTCGATGTATATGGTGGGCACGGCCTTATGTG
1 TAATACACTTCGATGTATATGGTGGGCACGACCTTATGTG
8889302 TA
1 TA
8889304 GCACTACGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (40 bp):
TAATACACTTCGATGTATATGGTGGGCACGACCTTATGTG
Found at i:8890677 original size:34 final size:34
Alignment explanation
Indices: 8890631--8890728 Score: 110
Period size: 34 Copynumber: 2.9 Consensus size: 34
8890621 AAAATCACTT
*
8890631 CAGTATCAATATTGTAATTCCAATTCTGGTTTTA
1 CAGTATCGATATTGTAATTCCAATTCTGGTTTTA
* * *
8890665 TAGTATCGATATTGTAATTTCAGTGT-TGGTTTTA
1 CAGTATCGATATTGTAATTCCAAT-TCTGGTTTTA
* *
8890699 CAGTATCGGTACTGTAATTCC-ATTACTGGT
1 CAGTATCGATATTGTAATTCCAATT-CTGGT
8890729 ATTAATGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
32 1 0.02
33 1 0.02
34 49 0.94
35 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (34 bp):
CAGTATCGATATTGTAATTCCAATTCTGGTTTTA
Found at i:8899047 original size:18 final size:17
Alignment explanation
Indices: 8899024--8899067 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
8899014 GTTGAAATTC
8899024 AATTTTGTTT-AAGCGTCA
1 AATTTTGTTTAAAGC-T-A
8899042 AATTTT-TTTAAAGCTA
1 AATTTTGTTTAAAGCTA
8899058 AATTTTGTTT
1 AATTTTGTTT
8899068 GGAATGCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.29
17 7 0.29
18 10 0.42
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (17 bp):
AATTTTGTTTAAAGCTA
Found at i:8899298 original size:18 final size:18
Alignment explanation
Indices: 8899275--8899333 Score: 73
Period size: 18 Copynumber: 3.1 Consensus size: 18
8899265 CAACAATTGG
*
8899275 TAACAATTAATATCTTTT
1 TAACAATTGATATCTTTT
8899293 TAACAATTGATATCCTTTTTGT
1 TAACAATTGATAT-C--TTT-T
8899315 TAACAATTGATATCTTTT
1 TAACAATTGATATCTTTT
8899333 T
1 T
8899334 CATTAAACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
18 14 0.39
19 4 0.11
21 4 0.11
22 14 0.39
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.51
Consensus pattern (18 bp):
TAACAATTGATATCTTTT
Found at i:8899319 original size:22 final size:21
Alignment explanation
Indices: 8899275--8899333 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
8899265 CAACAATTGG
*
8899275 TAACAATTAATATC--TTT-T
1 TAACAATTGATATCTTTTTGT
8899293 TAACAATTGATATCCTTTTTGT
1 TAACAATTGATAT-CTTTTTGT
8899315 TAACAATTGATATCTTTTT
1 TAACAATTGATATCTTTTT
8899334 CATTAAACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 12 0.33
19 1 0.03
21 9 0.25
22 14 0.39
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.51
Consensus pattern (21 bp):
TAACAATTGATATCTTTTTGT
Found at i:8899339 original size:22 final size:22
Alignment explanation
Indices: 8899292--8899339 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
8899282 TAATATCTTT
*
8899292 TTAACAATTGATATCCTTTTTG
1 TTAACAATTGATATCCTTTTTA
8899314 TTAACAATTGATAT-CTTTTTCA
1 TTAACAATTGATATCCTTTTT-A
8899336 TTAA
1 TTAA
8899340 ACATTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.50
Consensus pattern (22 bp):
TTAACAATTGATATCCTTTTTA
Found at i:8900004 original size:127 final size:127
Alignment explanation
Indices: 8899778--8900007 Score: 433
Period size: 127 Copynumber: 1.8 Consensus size: 127
8899768 GATTCAAGAT
8899778 GATTAACTCAATTCTATTATTCTTGAGTATTCTTTCTCTGTTCTAGAATTGTGCAAACATCTTAC
1 GATTAACTCAATTCTATTATTCTTGAGTATTCTTTCTCTGTTCTAGAATTGTGCAAACATCTTAC
8899843 CTTGTGAGGTTTTTCTGTAAGTTTACGAAATTTGTAATATTATCTTGGCTATTTCGTCAATC
66 CTTGTGAGGTTTTTCTGTAAGTTTACGAAATTTGTAATATTATCTTGGCTATTTCGTCAATC
* *
8899905 GATTAACTCAATTGTATTATTCTTGAGTGTTCTTTCTCTGTTCTAGAATTGTGCAAACATCTTAC
1 GATTAACTCAATTCTATTATTCTTGAGTATTCTTTCTCTGTTCTAGAATTGTGCAAACATCTTAC
*
8899970 CTTGTGAGGTTTTTCTGTAAGTTTGCGAAATTTGTAAT
66 CTTGTGAGGTTTTTCTGTAAGTTTACGAAATTTGTAAT
8900008 CTTCTCTTTG
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
127 100 1.00
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.46
Consensus pattern (127 bp):
GATTAACTCAATTCTATTATTCTTGAGTATTCTTTCTCTGTTCTAGAATTGTGCAAACATCTTAC
CTTGTGAGGTTTTTCTGTAAGTTTACGAAATTTGTAATATTATCTTGGCTATTTCGTCAATC
Found at i:8901680 original size:15 final size:15
Alignment explanation
Indices: 8901662--8901714 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
8901652 TAAATGTTGG
*
8901662 AAATTAAAGAACAAA
1 AAATTAAAGAACTAA
8901677 AAATTAAA-ATACTAA
1 AAATTAAAGA-ACTAA
* *
8901692 AAATTAAAGTACTGA
1 AAATTAAAGAACTAA
8901707 AAATTAAA
1 AAATTAAA
8901715 ATTGTTAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 1 0.03
15 32 0.97
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.23
Consensus pattern (15 bp):
AAATTAAAGAACTAA
Found at i:8906385 original size:4 final size:4
Alignment explanation
Indices: 8906376--8906430 Score: 56
Period size: 4 Copynumber: 13.8 Consensus size: 4
8906366 CGGCCATCCT
* * * * * *
8906376 TATA TATA TATA TATA TATA TATA CATG TATG TATG TATG TATA TATG
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
8906424 TATA TAT
1 TATA TAT
8906431 GTAACCTAGT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (4 bp):
TATA
Found at i:8906431 original size:8 final size:8
Alignment explanation
Indices: 8906376--8906433 Score: 62
Period size: 8 Copynumber: 7.2 Consensus size: 8
8906366 CGGCCATCCT
*
8906376 TATATATA
1 TATATATG
*
8906384 TATATATA
1 TATATATG
*
8906392 TATATATA
1 TATATATG
* *
8906400 CATGTATG
1 TATATATG
*
8906408 TATGTATG
1 TATATATG
8906416 TATATATG
1 TATATATG
8906424 TATATATG
1 TATATATG
8906432 TA
1 TA
8906434 ACCTAGTGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 45 1.00
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (8 bp):
TATATATG
Found at i:8910350 original size:29 final size:29
Alignment explanation
Indices: 8910232--8910383 Score: 125
Period size: 29 Copynumber: 5.4 Consensus size: 29
8910222 AAATAATTAA
*
8910232 CAAAATAGCA-CCTTTTCGAATTAATTCC
1 CAAAATAGCACCCATTTCGAATTAATTCC
* * *
8910260 TAAAATAGCACCAATTTTGAATTAATTCC
1 CAAAATAGCACCCATTTCGAATTAATTCC
* ** * *
8910289 CAAAATATCA-CTTTTTC-AA-AAATTAC
1 CAAAATAGCACCCATTTCGAATTAATTCC
8910315 CAAAATAGCACCCATTTCGAATTAATTCC
1 CAAAATAGCACCCATTTCGAATTAATTCC
** * ***
8910344 CTGAATAGCA-CTAAACCGAATTAATTCC
1 CAAAATAGCACCCATTTCGAATTAATTCC
*
8910372 CAAAATAACACC
1 CAAAATAGCACC
8910384 GGTCAACTGT
Statistics
Matches: 94, Mismatches: 25, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
26 14 0.15
27 7 0.07
28 36 0.38
29 37 0.39
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (29 bp):
CAAAATAGCACCCATTTCGAATTAATTCC
Found at i:8910351 original size:84 final size:83
Alignment explanation
Indices: 8910207--8910378 Score: 222
Period size: 84 Copynumber: 2.1 Consensus size: 83
8910197 CATTTTACAC
* *
8910207 AAATAGCACTTTTTTAAATAATTAACAAAATAGCACCTTTTCGAATTAATTCCTAAAATAGCACC
1 AAATAGCACTTTTTCAAATAATTAACAAAATAGCACCATTTCGAATTAATTCCTAAAATAGCACC
***
8910272 AATTTTGAATTAATTCCCA
66 AA-ACCGAATTAATTCCCA
* * *
8910291 AAATATCACTTTTTCAAA-AATTACCAAAATAGCACCCATTTCGAATTAATTCCCT-GAATAGCA
1 AAATAGCACTTTTTCAAATAATTAACAAAATAGCA-CCATTTCGAATTAATT-CCTAAAATAGCA
*
8910354 CTAAACCGAATTAATTCCCA
64 CCAAACCGAATTAATTCCCA
8910374 AAATA
1 AAATA
8910379 ACACCGGTCA
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
83 33 0.43
84 41 0.53
85 3 0.04
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.31
Consensus pattern (83 bp):
AAATAGCACTTTTTCAAATAATTAACAAAATAGCACCATTTCGAATTAATTCCTAAAATAGCACC
AAACCGAATTAATTCCCA
Found at i:8910410 original size:13 final size:13
Alignment explanation
Indices: 8910392--8910450 Score: 97
Period size: 13 Copynumber: 4.8 Consensus size: 13
8910382 CCGGTCAACT
8910392 GTCAACGGGTCGG
1 GTCAACGGGTCGG
8910405 GTCAACGGGTCGG
1 GTCAACGGGTCGG
8910418 GTCAACGGGTCGG
1 GTCAACGGGTCGG
8910431 GT---CGGGTCGG
1 GTCAACGGGTCGG
8910441 GTCAACGGGT
1 GTCAACGGGT
8910451 AAACGGGTCG
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.23
13 33 0.77
ACGTcount: A:0.14, C:0.22, G:0.47, T:0.17
Consensus pattern (13 bp):
GTCAACGGGTCGG
Found at i:8912166 original size:34 final size:32
Alignment explanation
Indices: 8912104--8912173 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
8912094 CCTTACAAAC
* *
8912104 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACCTT
*
8912136 TCCCTAGCTTTTACACGGGATAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACCTT
8912170 TCCC
1 TCCC
8912174 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACCTT
Found at i:8912480 original size:21 final size:21
Alignment explanation
Indices: 8912456--8912497 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8912446 CCAGAATGGG
* *
8912456 GGGAATCGGTTCCCCTTCATA
1 GGGAATCGATACCCCTTCATA
8912477 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
8912498 ATATTCAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Done.