Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20687664
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 50 of 91
Found at i:10750388 original size:15 final size:15
Alignment explanation
Indices: 10750368--10750396 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10750358 ATAACATTTC
10750368 TTTCCATTTCAATTA
1 TTTCCATTTCAATTA
10750383 TTTCCATTTCAATT
1 TTTCCATTTCAATT
10750397 TCCTTTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTCCATTTCAATTA
Found at i:10753129 original size:15 final size:15
Alignment explanation
Indices: 10753109--10753137 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10753099 ATAACATTTC
10753109 TTTCCATTTCAATTA
1 TTTCCATTTCAATTA
10753124 TTTCCATTTCAATT
1 TTTCCATTTCAATT
10753138 TCCTTTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTCCATTTCAATTA
Found at i:10754040 original size:15 final size:15
Alignment explanation
Indices: 10754020--10754048 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10754010 GATAACATTC
10754020 TTTCCATTTCAATTA
1 TTTCCATTTCAATTA
10754035 TTTCCATTTCAATT
1 TTTCCATTTCAATT
10754049 TCCTTTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTCCATTTCAATTA
Found at i:10754656 original size:912 final size:914
Alignment explanation
Indices: 10747876--10757011 Score: 17921
Period size: 914 Copynumber: 10.0 Consensus size: 914
10747866 TGGGTGCCAA
*
10747876 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGCATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
*
10747941 AGACAAGGGAACCATTTTTCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
10748006 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
10748071 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
10748136 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10748201 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10748266 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10748331 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
10748396 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
* *
10748461 CCACCTTTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCATAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
10748526 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
10748591 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
*
10748656 TCCTAGATCAGGAAACAACAAGGCTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
*
10748721 ATCAGACAGGTACTGATGTCCTTGAATTAAAAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10748786 GATT
911 GATT
*
10748790 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGCATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
*
10748855 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTCCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
10748920 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
*
10748985 CTTTGATATTCATTTTTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
10749050 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10749115 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10749180 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10749245 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
10749310 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
10749375 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
*
10749440 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCAATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
10749505 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
*
10749570 TCCTAGATCAGGAAACAACAAGTTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
10749635 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10749700 GATT
911 GATT
10749704 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
10749769 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
*
10749834 GATATGTATCTAGCCGAATGGACACCTATTTATTTGGCCAAACCTATACAAGTCTATAAATATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
10749899 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
10749964 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10750029 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10750094 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10750159 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
*
10750224 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGAAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
10750289 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
*
10750354 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCAATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
10750419 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
10750484 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
10750549 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10750614 GATT
911 GATT
10750618 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
10750683 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
10750748 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
*
10750813 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGAGTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
10750878 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10750943 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10751008 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10751073 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
10751138 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
10751203 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
10751268 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
10751333 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
10751398 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
10751463 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10751528 GATT
911 GATT
10751532 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
10751597 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
10751662 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
*
10751727 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGAGTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
*
10751792 TCAAGTTCTTTTTAGAACTATATCGACTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10751857 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10751922 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10751987 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
10752052 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
10752117 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
10752182 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
10752247 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
10752312 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
10752377 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10752442 GATT
911 GATT
*
10752446 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGCATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
10752511 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
*
10752576 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAATTCTATAAATATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
10752641 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
*
10752706 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTATCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10752771 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10752836 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTAT-AGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10752900 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
10752965 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
10753030 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
*
10753095 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCAATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
10753160 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
10753225 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
10753290 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10753355 GATT
911 GATT
10753359 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
10753424 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
*
10753489 GATATGTATCTAGCCGAATGGACACCTATTTATTTGGCCAAACCTATACAAGTCTAT-AA-ATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
10753552 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
10753617 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10753682 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10753747 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10753812 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
*
10753877 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGAAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
10753942 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
*
10754007 TTTGATAACA-TTCTTTCCATTTCAATTATTTCCATTTCAATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
10754071 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
10754136 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
10754201 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10754266 GATT
911 GATT
10754270 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
10754335 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
10754400 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCC-AACCTATACAAGTCTATAAATATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
*
10754464 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGAGTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
10754529 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10754594 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10754659 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10754724 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
10754789 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
10754854 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
10754919 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
10754984 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
10755049 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
10755114 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10755179 GATT
911 GATT
10755183 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
10755248 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
10755313 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
*
10755378 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGAGTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
*
10755443 TCAAGTTCTTTTTAGAACTATATCGACTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10755508 CATTGATACTTCTGGTTCCTAGTTC--ATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10755571 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10755636 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
10755701 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
10755766 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
10755831 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
10755896 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
10755961 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
10756026 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10756091 GATT
911 GATT
*
10756095 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGCATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
1 AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
10756160 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
66 AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
*
10756225 GATATGTATCTAGCCGAATGGACACCTA-TTATTCGGCCAAACCTATACAATTCTATAAATATAG
131 GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
10756289 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
196 CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
*
10756354 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTATCAAACCCCTTT
261 TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
10756419 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
326 CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
10756484 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTAT-AGACAC
391 AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
10756548 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
456 TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
10756613 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
521 CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
10756678 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
586 CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
10756743 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
651 TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
* *
10756808 AATTAACCAATTATTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGTAGCATTTTGGTCTC
716 AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
10756873 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
781 TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
10756938 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
846 ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
10757003 GATT
911 GATT
10757007 AATGA
1 AATGA
10757012 TGGGTTTAAG
Statistics
Matches: 8172, Mismatches: 43, Indels: 16
0.99 0.01 0.00
Matches are distributed among these distances:
910 17 0.00
911 866 0.11
912 1866 0.23
913 1165 0.14
914 4258 0.52
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (914 bp):
AATGAAGAGGGTTTTCTCTATTCGGCCAAGGTATCACCTTGCTTCAAGTTGGCGCCAAGATGAAG
AGACAAGGGAACCATTTTGCCAAAGACATCTCCCCTCATCCAAGCATAATCTATTTGCATTTTAA
GATATGTATCTAGCCGAATGGACACCTATTTATTCGGCCAAACCTATACAAGTCTATAAATATAG
CTTTGATATTCATTTGTAACTTAAACCCTTTGATAATATAAAATCCTTGTGAGATTATTCTCTCT
TCAAGTTCTTTTTAGAACTATATCGATTAAGCAAGCTTTCATAGTTTGTGGTGTCAAACCCCTTT
CATTGATACTTCTGGTTCCTAGTTCATATAACTAGTGGGTAAAAGTCCTTGTTCCCATCCCTTAT
AAAACTTATAAGAAATGGGTCTTTGTTCTTTATAACATTGGTTCCTTCTTAGTTTTATAAGACAC
TATTTCCATCACCATCTTTTCCATCTCCATAGTCCATCACCTTCACGCCAACTCCATTACCATTC
CATTGCCATCTTCATCTTTTCACCATTAAATTATCCTTCATTCAGCAACAAGGCATACTTCATCA
CCACCATTGGAGGCCGAAATCAACATTACTTGAAGGAGATTTATTCAACACTTCCACAGCCCATC
TTTGATAACATTTCTTTCCATTTCAATTATTTCCATTTCTATTTCCTTTTCTTAATTATCCATTT
AATTAACCAATTCTTCTTATTTCATGTAGATTACTTATCAATTCAAAGTGCAGCATTTTGGTCTC
TCCTAGATCAGGAAACAACAAGGTTGGTAACTTATTCATTATTGAAGAAGCATGGTTAGCCTTAC
ATCAGACAGGTACTGATGTCCTTGAATTAATAAGCTTGGGCTGCAATAAAATAAGAAAGAAATAT
GATT
Found at i:10758361 original size:2 final size:2
Alignment explanation
Indices: 10758349--10758392 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
10758339 TCATAAAAAC
*
10758349 TA TA GA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10758391 TA
1 TA
10758393 AAAGATAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:10760789 original size:16 final size:16
Alignment explanation
Indices: 10760768--10760799 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10760758 TCTTCCACCA
10760768 ATGTTAGAATGCAAAT
1 ATGTTAGAATGCAAAT
10760784 ATGTTAGAATGCAAAT
1 ATGTTAGAATGCAAAT
10760800 GAGCTAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (16 bp):
ATGTTAGAATGCAAAT
Found at i:10762918 original size:14 final size:16
Alignment explanation
Indices: 10762888--10762954 Score: 52
Period size: 16 Copynumber: 4.1 Consensus size: 16
10762878 TTAGCTTGAT
10762888 TTCTTTTTGACTTTTC
1 TTCTTTTTGACTTTTC
10762904 TTCTTTTT-A-TTTTC
1 TTCTTTTTGACTTTTC
*
10762918 TT-TTCTTCTGAATTTTTCC
1 TTCTT-TT-TG-ACTTTT-C
10762937 TTCTTTTT-ATCTTTTC
1 TTCTTTTTGA-CTTTTC
10762953 TT
1 TT
10762955 TTATTTTTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 16
0.71 0.02 0.27
Matches are distributed among these distances:
13 2 0.05
14 9 0.21
15 2 0.05
16 12 0.29
17 5 0.12
18 5 0.12
19 5 0.12
20 2 0.05
ACGTcount: A:0.07, C:0.18, G:0.03, T:0.72
Consensus pattern (16 bp):
TTCTTTTTGACTTTTC
Found at i:10765993 original size:23 final size:24
Alignment explanation
Indices: 10765949--10765997 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
10765939 TTTTCTTTTA
*
10765949 TTCTTTTTGAGTGCTTGAAATTTC
1 TTCTTTTGGAGTGCTTGAAATTTC
*
10765973 TTCTTTTGGAGTGCTT-CAATTTC
1 TTCTTTTGGAGTGCTTGAAATTTC
10765996 TT
1 TT
10765998 TGATGATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.14, C:0.14, G:0.16, T:0.55
Consensus pattern (24 bp):
TTCTTTTGGAGTGCTTGAAATTTC
Found at i:10769577 original size:11 final size:11
Alignment explanation
Indices: 10769561--10769599 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
10769551 ATGCTCCATT
10769561 TAGCTCCAATG
1 TAGCTCCAATG
*
10769572 TAGCTCC-ATT
1 TAGCTCCAATG
10769582 TAGCTCCAATG
1 TAGCTCCAATG
10769593 TAGCTCC
1 TAGCTCC
10769600 CAAGTAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (11 bp):
TAGCTCCAATG
Found at i:10769579 original size:21 final size:21
Alignment explanation
Indices: 10769553--10769599 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
10769543 GCTGTCGCAT
10769553 GCTCCATTTAGCTCCAATGTA
1 GCTCCATTTAGCTCCAATGTA
10769574 GCTCCATTTAGCTCCAATGTA
1 GCTCCATTTAGCTCCAATGTA
10769595 GCTCC
1 GCTCC
10769600 CAAGTAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.32
Consensus pattern (21 bp):
GCTCCATTTAGCTCCAATGTA
Found at i:10802612 original size:90 final size:91
Alignment explanation
Indices: 10802495--10802676 Score: 267
Period size: 90 Copynumber: 2.0 Consensus size: 91
10802485 GGGAAATGAT
** *
10802495 GCTTGGCCGAATAGGGAGAGAGTTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGGCACAT-
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGCCACATG
*
10802559 GGGGCTGTTCACATGCAAAACACATG
66 GGGGCTGGTCACATGCAAAACACATG
* * *
10802585 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATGATCCTCATGCAAGCCACATG
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGCCACATG
* **
10802650 GGGGCTGGTCATATGCAAGGCACATG
66 GGGGCTGGTCACATGCAAAACACATG
10802676 G
1 G
10802677 GTGTTCTAGG
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
90 58 0.72
91 23 0.28
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (91 bp):
GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGCCACATG
GGGGCTGGTCACATGCAAAACACATG
Found at i:10802796 original size:26 final size:26
Alignment explanation
Indices: 10802767--10802821 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
10802757 GTCTTCTTCA
10802767 AGCTAGCATGAGTTGTGAAGCTAGCT
1 AGCTAGCATGAGTTGTGAAGCTAGCT
10802793 AGCTAGCATGAGTTGTGAAGCTAGCT
1 AGCTAGCATGAGTTGTGAAGCTAGCT
10802819 AGC
1 AGC
10802822 AAACATGGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (26 bp):
AGCTAGCATGAGTTGTGAAGCTAGCT
Found at i:10802828 original size:26 final size:26
Alignment explanation
Indices: 10802773--10802828 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
10802763 TTCAAGCTAG
* *
10802773 CATGAGTTGTGAAGCTAGCTAGCTAG
1 CATGAGTTGTGAAGCTAGCTAGCAAA
10802799 CATGAGTTGTGAAGCTAGCTAGCAAA
1 CATGAGTTGTGAAGCTAGCTAGCAAA
10802825 CATG
1 CATG
10802829 GGCTGTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (26 bp):
CATGAGTTGTGAAGCTAGCTAGCAAA
Found at i:10807049 original size:90 final size:91
Alignment explanation
Indices: 10806896--10807077 Score: 240
Period size: 90 Copynumber: 2.0 Consensus size: 91
10806886 GGGAAATGAT
* ** * *
10806896 GCTTGGCGGAATAGGGAGAGAGTTTTTCATCTTAGCGCCTAAATAAACCACATGCAAGGCACAT-
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTAGCGCCTAAATAAACCACATGCAAGCCACATG
*
10806960 GGGGCTGTTCACATGCAAAACACATG
66 GGGGCTGGTCACATGCAAAACACATG
* * * *
10806986 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATGATCCTCATGCAAGCCACATG
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTAGCGCCTAAATAAACCACATGCAAGCCACATG
* **
10807051 GGGGCTGGTCATATGCAAGGCACATG
66 GGGGCTGGTCACATGCAAAACACATG
10807077 G
1 G
10807078 GTGTTCTAGG
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
90 55 0.71
91 23 0.29
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (91 bp):
GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTAGCGCCTAAATAAACCACATGCAAGCCACATG
GGGGCTGGTCACATGCAAAACACATG
Found at i:10815912 original size:14 final size:14
Alignment explanation
Indices: 10815895--10815921 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10815885 ATGGGCATGA
10815895 ATGGTGATGGAAAG
1 ATGGTGATGGAAAG
10815909 ATGGTGATGGAAA
1 ATGGTGATGGAAA
10815922 TAGTATCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.41, T:0.22
Consensus pattern (14 bp):
ATGGTGATGGAAAG
Found at i:10818153 original size:5 final size:5
Alignment explanation
Indices: 10818139--10818170 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
10818129 AGTGCTTCAA
10818139 CTTTT C-TTT CTTTT CTTTT CTTTT CTTTT CTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTT
10818171 CTTTTTGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
CTTTT
Found at i:10818202 original size:26 final size:27
Alignment explanation
Indices: 10818164--10818216 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
10818154 TTTTCTTTTC
*
10818164 TTTTCTTCTTTTTGAGTGCTTGAATTT
1 TTTTCTTCTTTTTGAGTGCTTAAATTT
10818191 TTTTCTTC-TTTTGAGTGCTTAAATTT
1 TTTTCTTCTTTTTGAGTGCTTAAATTT
10818217 GTTTGCTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.13, C:0.11, G:0.13, T:0.62
Consensus pattern (27 bp):
TTTTCTTCTTTTTGAGTGCTTAAATTT
Found at i:10824193 original size:30 final size:29
Alignment explanation
Indices: 10824159--10824253 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 29
10824149 ACACATTGGG
*
10824159 ACAGCTTGATGAAGCATTTGGAAGACACA
1 ACAGCTTGATGGAGCATTTGGAAGACACA
10824188 TACAGCTT-AGTGGAGCATTTTGGAAGACA-A
1 -ACAGCTTGA-TGGAGCA-TTTGGAAGACACA
* * *
10824218 ACAGCTTGGTGGATCATTTGGGAGACACAA
1 ACAGCTTGATGGAGCATTTGGAAGACAC-A
10824248 ACAGCT
1 ACAGCT
10824254 CACAAAGAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
28 10 0.18
29 14 0.25
30 21 0.38
31 11 0.20
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (29 bp):
ACAGCTTGATGGAGCATTTGGAAGACACA
Found at i:10825093 original size:5 final size:5
Alignment explanation
Indices: 10825085--10825109 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
10825075 TCCGAAAATA
10825085 AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG
10825110 TTATGGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:10828055 original size:91 final size:91
Alignment explanation
Indices: 10827875--10828045 Score: 216
Period size: 91 Copynumber: 1.9 Consensus size: 91
10827865 CCTAGAACAC
* *
10827875 CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTGCATGTGGATCATTTAGGCTCCAAGAAG
1 CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGAAG
** *
10827940 AAGAGTTCTCTCCCTATTCAGCCAAG
66 AAGACATCTATCCCTATTCAGCCAAG
** * * * * *
10827966 CCATGTGTTTTGCATGTGATCAGCCCCCATGTGCCTTGCATATGGTTCATTTATGCGCCAAGATG
1 CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGAAG
10828031 AATGACCATCTATCC
66 AA-GA-CATCTATCC
10828046 ATTCGGCCAA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
91 58 0.88
92 2 0.03
93 6 0.09
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (91 bp):
CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGAAG
AAGACATCTATCCCTATTCAGCCAAG
Found at i:10833174 original size:75 final size:75
Alignment explanation
Indices: 10833030--10833179 Score: 207
Period size: 75 Copynumber: 2.0 Consensus size: 75
10833020 TGTTTTGAGC
* * *
10833030 CATTCACTTGTGCAGGTTGTTTTGCTTCCTTCCTAGATCCATAATCAAATGAGAAGGTAGAATTA
1 CATTCACTTATGCAGGTTATTTTGCTTCCTTCCTAGATCCATAATCAAATGAGAAGGTAGAAGTA
10833095 CCTTACATCA
66 CCTTACATCA
*
10833105 CATTCACTTATGCAGGTTATTTTGCTTCCTTCCTAGATCCACT-ATCAATTGA-AGAGGT-GCAA
1 CATTCACTTATGCAGGTTATTTTGCTTCCTTCCTAGATCCA-TAATCAAATGAGA-AGGTAG-AA
*
10833167 GTGCCTTACATCA
63 GTACCTTACATCA
10833180 AGTGGTAATC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
74 2 0.03
75 64 0.96
76 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (75 bp):
CATTCACTTATGCAGGTTATTTTGCTTCCTTCCTAGATCCATAATCAAATGAGAAGGTAGAAGTA
CCTTACATCA
Found at i:10839520 original size:24 final size:21
Alignment explanation
Indices: 10839486--10839528 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
10839476 TCCACAAGAC
*
10839486 ATGTCCTTTGACATTTCAAAGG
1 ATGTCCTTTGA-AATTCAAAGG
10839508 ATGTACCTCTTGAAATTCAAA
1 ATGT-CCT-TTGAAATTCAAA
10839529 AGAATGTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 10 0.56
24 4 0.22
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (21 bp):
ATGTCCTTTGAAATTCAAAGG
Found at i:10843765 original size:19 final size:20
Alignment explanation
Indices: 10843724--10843774 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
10843714 GAAACCCCTT
*
10843724 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
10843744 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
10843763 TGAAGATACATG
1 TGAAAATACATG
10843775 CTCTTGGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:10844711 original size:30 final size:31
Alignment explanation
Indices: 10844672--10844731 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
10844662 ACATGCTGCC
**
10844672 ATGATATCTAAATGATATGCAAACATAATAA
1 ATGATATCTAAAACATATGCAAACATAATAA
*
10844703 ATGA-ATCTAAAACATATGTAAACATAATA
1 ATGATATCTAAAACATATGCAAACATAATA
10844732 TAAAGCTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.53, C:0.10, G:0.08, T:0.28
Consensus pattern (31 bp):
ATGATATCTAAAACATATGCAAACATAATAA
Found at i:10846082 original size:18 final size:19
Alignment explanation
Indices: 10846047--10846085 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
10846037 TGCATCCACT
10846047 CTCCAATCATTATTTTCAA
1 CTCCAATCATTATTTTCAA
10846066 CTCCAA-CATT-TTGTTCAA
1 CTCCAATCATTATT-TTCAA
10846084 CT
1 CT
10846086 TCAAAATGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 11 0.58
19 6 0.32
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41
Consensus pattern (19 bp):
CTCCAATCATTATTTTCAA
Found at i:10848676 original size:30 final size:31
Alignment explanation
Indices: 10848637--10848696 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
10848627 ACATGCTGCC
**
10848637 ATGATATCTAAATGATATGCAAACATAATAA
1 ATGATATCTAAAACATATGCAAACATAATAA
*
10848668 ATGA-ATCTAAAACATATGTAAACATAATA
1 ATGATATCTAAAACATATGCAAACATAATA
10848697 TAAATCTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.53, C:0.10, G:0.08, T:0.28
Consensus pattern (31 bp):
ATGATATCTAAAACATATGCAAACATAATAA
Found at i:10852604 original size:24 final size:24
Alignment explanation
Indices: 10852555--10852605 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
10852545 TCCTTTGTTT
*
10852555 TTTTCTTCTTTATGAGTGCTGGAA
1 TTTTCTTCTTTATGAGTGCTGCAA
*
10852579 TTTTCTTCTTT-TGGAGTGCTTCAA
1 TTTTCTTCTTTAT-GAGTGCTGCAA
10852603 TTT
1 TTT
10852606 CTTTGCTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.55
Consensus pattern (24 bp):
TTTTCTTCTTTATGAGTGCTGCAA
Found at i:10856299 original size:30 final size:29
Alignment explanation
Indices: 10856265--10856359 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 29
10856255 ACACGTTGGG
* *
10856265 ACAGCTTGATGAAGCATTTGGAAGAGACAT
1 ACAGCTTGATGGAGCATTTGG-AGAGACAA
10856295 ACAGCTT-AGTGGAGCATTTTGGA-AGACAA
1 ACAGCTTGA-TGGAGCA-TTTGGAGAGACAA
* * *
10856324 ACCGCTTGGTGGAGCATTTGGGAGACACAA
1 ACAGCTTGATGGAGCATTT-GGAGAGACAA
10856354 ACAGCT
1 ACAGCT
10856360 CACAAAGAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
28 3 0.06
29 22 0.41
30 24 0.44
31 5 0.09
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (29 bp):
ACAGCTTGATGGAGCATTTGGAGAGACAA
Found at i:10856335 original size:29 final size:28
Alignment explanation
Indices: 10856277--10856359 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 28
10856267 AGCTTGATGA
*
10856277 AGCATTTGGAAGAGACATACAGCTTAGTGG
1 AGCATTTGG-A-AGACAAACAGCTTAGTGG
* *
10856307 AGCATTTTGGAAGACAAACCGCTTGGTGG
1 AGCA-TTTGGAAGACAAACAGCTTAGTGG
*
10856336 AGCATTTGGGAGACACAAACAGCT
1 AGCATTT-GGA-AGACAAACAGCT
10856360 CACAAAGAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
28 3 0.07
29 22 0.49
30 15 0.33
31 5 0.11
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (28 bp):
AGCATTTGGAAGACAAACAGCTTAGTGG
Found at i:10860406 original size:16 final size:16
Alignment explanation
Indices: 10860385--10860416 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10860375 TCTTCCACCA
10860385 ATGTTAGAATGCAAAT
1 ATGTTAGAATGCAAAT
10860401 ATGTTAGAATGCAAAT
1 ATGTTAGAATGCAAAT
10860417 GAGCTAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (16 bp):
ATGTTAGAATGCAAAT
Found at i:10865629 original size:20 final size:22
Alignment explanation
Indices: 10865593--10865637 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
10865583 CTCAGTTCCT
*
10865593 TAGCTACTCTCCCAGCTACTTC
1 TAGCTACTCTCCCAGCTACCTC
10865615 TAGCTACT-T-CCAGCTACCTC
1 TAGCTACTCTCCCAGCTACCTC
10865635 TAG
1 TAG
10865638 TCTATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.59
21 1 0.05
22 8 0.36
ACGTcount: A:0.20, C:0.38, G:0.11, T:0.31
Consensus pattern (22 bp):
TAGCTACTCTCCCAGCTACCTC
Found at i:10871458 original size:37 final size:36
Alignment explanation
Indices: 10871408--10871513 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 36
10871398 GATACAATCT
*
10871408 GTCCATCACCATTATCCCGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
10871444 GGTCCATCACCATTATCACGCCTATATCATCACCATA
1 -GTCCATCACCATTATCACGCCTATATCATCACCATA
* *
10871481 TTCCATCACCA-TATCACGCCTATATTATCACCA
1 GTCCATCACCATTATCACGCCTATATCATCACCA
10871514 ACTTATAAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 21 0.32
36 10 0.15
37 35 0.53
ACGTcount: A:0.29, C:0.37, G:0.06, T:0.28
Consensus pattern (36 bp):
GTCCATCACCATTATCACGCCTATATCATCACCATA
Found at i:10874222 original size:22 final size:22
Alignment explanation
Indices: 10874175--10874226 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
10874165 CACCATGAGA
* *
10874175 CCATGCAAATTGTAACATTAGG
1 CCATGCATATTGTAACACTAGG
*
10874197 CCATGCATATTGTAAC-CTACGT
1 CCATGCATATTGTAACACTA-GG
10874219 CCATGCAT
1 CCATGCAT
10874227 GTGTTTCAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 2 0.08
22 24 0.92
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (22 bp):
CCATGCATATTGTAACACTAGG
Found at i:10879358 original size:33 final size:33
Alignment explanation
Indices: 10879279--10879382 Score: 95
Period size: 33 Copynumber: 3.1 Consensus size: 33
10879269 ATACAATCTG
* *
10879279 TCCATCACCATTATCACGCCTATATCATCA-CCATAT
1 TCCATCACCA-TATCACGCCAATAACATCATCC---T
10879315 TCCATCACCATATCACGCCAATAACATCATCCT
1 TCCATCACCATATCACGCCAATAACATCATCCT
* * * *
10879348 TCCATTACCATTTCATCACCATTAA-ATCATCCT
1 TCCATCACCATATCA-CGCCAATAACATCATCCT
10879381 TC
1 TC
10879383 ATTCATCAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
33 24 0.40
34 7 0.12
35 17 0.28
36 12 0.20
ACGTcount: A:0.31, C:0.37, G:0.02, T:0.31
Consensus pattern (33 bp):
TCCATCACCATATCACGCCAATAACATCATCCT
Found at i:10883383 original size:33 final size:33
Alignment explanation
Indices: 10883304--10883407 Score: 95
Period size: 33 Copynumber: 3.1 Consensus size: 33
10883294 ATACAATCTG
* *
10883304 TCCATCACCATTATCACGCCTATATCATCA-CCATAT
1 TCCATCACCA-TATCACGCCAATAACATCATCC---T
10883340 TCCATCACCATATCACGCCAATAACATCATCCT
1 TCCATCACCATATCACGCCAATAACATCATCCT
* * * *
10883373 TCCATTACCATTTCATCACCATTAA-ATCATCCT
1 TCCATCACCATATCA-CGCCAATAACATCATCCT
10883406 TC
1 TC
10883408 ATTCATCAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
33 24 0.40
34 7 0.12
35 17 0.28
36 12 0.20
ACGTcount: A:0.31, C:0.37, G:0.02, T:0.31
Consensus pattern (33 bp):
TCCATCACCATATCACGCCAATAACATCATCCT
Found at i:10896731 original size:21 final size:23
Alignment explanation
Indices: 10896706--10896758 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 23
10896696 TGTAAAAGCT
*
10896706 AAAGAAAATGAGAAA-A-GAGAA
1 AAAGAAAATGACAAAGATGAGAA
* * *
10896727 AAAGAGAGTGACAAAGATGAGGA
1 AAAGAAAATGACAAAGATGAGAA
10896750 AAAGAAAAT
1 AAAGAAAAT
10896759 CAACATGTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 12 0.50
22 1 0.04
23 11 0.46
ACGTcount: A:0.64, C:0.02, G:0.26, T:0.08
Consensus pattern (23 bp):
AAAGAAAATGACAAAGATGAGAA
Found at i:10899095 original size:11 final size:13
Alignment explanation
Indices: 10899063--10899092 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
10899053 TGGCCAAAGA
10899063 TGAAAAGGTATGT
1 TGAAAAGGTATGT
10899076 TGAAAAGGTATG-
1 TGAAAAGGTATGT
10899088 TGAAA
1 TGAAA
10899093 GGTGTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:10910688 original size:11 final size:13
Alignment explanation
Indices: 10910656--10910685 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
10910646 TGGCCAAAGA
10910656 TGAAAAGGTATGT
1 TGAAAAGGTATGT
10910669 TGAAAAGGTATG-
1 TGAAAAGGTATGT
10910681 TGAAA
1 TGAAA
10910686 GGTGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:10919394 original size:17 final size:17
Alignment explanation
Indices: 10919366--10919433 Score: 64
Period size: 17 Copynumber: 3.9 Consensus size: 17
10919356 CAATTAAGGA
* *
10919366 TTAATAAATGAACTGGT
1 TTAATGAATGAACTAGT
*
10919383 TTGATGAATGAACTAGT
1 TTAATGAATGAACTAGT
* *
10919400 TTAATTAATGAACTAACT
1 TTAATGAATGAACT-AGT
* *
10919418 TTATTCAATGAACTAG
1 TTAATGAATGAACTAG
10919434 ATACTTTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
17 27 0.66
18 14 0.34
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.37
Consensus pattern (17 bp):
TTAATGAATGAACTAGT
Found at i:10919427 original size:18 final size:18
Alignment explanation
Indices: 10919389--10919432 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
10919379 TGGTTTGATG
*
10919389 AATGAACT-AGTTTAATT
1 AATGAACTAACTTTAATT
10919406 AATGAACTAACTTT-ATT
1 AATGAACTAACTTTAATT
10919423 CAATGAACTA
1 -AATGAACTA
10919433 GATACTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (18 bp):
AATGAACTAACTTTAATT
Found at i:10935382 original size:24 final size:24
Alignment explanation
Indices: 10935355--10935410 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
10935345 AGAGCACATT
10935355 CTTTGGAATACCAAATGTTCCAAC
1 CTTTGGAATACCAAATGTTCCAAC
* *
10935379 CTTTGGAATACCAAATGTTCCCAT
1 CTTTGGAATACCAAATGTTCCAAC
10935403 CTTTGGAA
1 CTTTGGAA
10935411 CTTCAATGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.32
Consensus pattern (24 bp):
CTTTGGAATACCAAATGTTCCAAC
Found at i:10945707 original size:33 final size:34
Alignment explanation
Indices: 10945648--10945774 Score: 82
Period size: 36 Copynumber: 3.7 Consensus size: 34
10945638 TGATGAATGA
* * *
10945648 AGGATGAT-TTAATGGTGATGAAATGGTAATGG-T
1 AGGATGATGTTATTGGCG-TGATATGGTAATGGAT
*
10945681 AGGATGATGTTATTGGCGTGATATGGTGATGGAAT
1 AGGATGATGTTATTGGCGTGATATGGTAATGG-AT
* * * *
10945716 ATGG-TGATGATATAGGCGTGATAATGGTGATGAACT
1 A-GGATGATGTTATTGGCGTGAT-ATGGTAATGGA-T
* *
10945752 ATGG-TGATGATATAGGCGTGATA
1 A-GGATGATGTTATTGGCGTGATA
10945775 ATGGAGATGG
Statistics
Matches: 81, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
33 20 0.25
34 7 0.09
35 20 0.25
36 34 0.42
ACGTcount: A:0.30, C:0.03, G:0.35, T:0.32
Consensus pattern (34 bp):
AGGATGATGTTATTGGCGTGATATGGTAATGGAT
Found at i:10945755 original size:36 final size:35
Alignment explanation
Indices: 10945685--10945797 Score: 156
Period size: 36 Copynumber: 3.2 Consensus size: 35
10945675 AATGGTAGGA
* *
10945685 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGAT-GAATATGG
10945720 TGATGATATAGGCGTGATAATGGTGATGAACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGAA-TATGG
* *
10945756 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGAT-GAATATGG
10945792 TGATGA
1 TGATGA
10945798 AAATAGTATC
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
35 19 0.27
36 50 0.70
37 2 0.03
ACGTcount: A:0.28, C:0.04, G:0.35, T:0.33
Consensus pattern (35 bp):
TGATGATATAGGCGTGATAATGGTGATGAATATGG
Found at i:10945796 original size:13 final size:12
Alignment explanation
Indices: 10945702--10945797 Score: 56
Period size: 13 Copynumber: 7.9 Consensus size: 12
10945692 ATTGGCGTGA
*
10945702 TATGGTGATGGAA
1 TATGGTGAT-GAT
10945715 TATGGTGATGA-
1 TATGGTGATGAT
*
10945726 TATAGGCG-TGAT
1 TAT-GGTGATGAT
* *
10945738 AATGGTGATGAAC
1 TATGGTGATG-AT
10945751 TATGGTGATGA-
1 TATGGTGATGAT
*
10945762 TATAGGCG-TGAT
1 TAT-GGTGATGAT
* *
10945774 AATGGAGATGGAT
1 TATGGTGAT-GAT
10945787 TATGGTGATGA
1 TATGGTGATGA
10945798 AAATAGTATC
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
11 18 0.28
12 18 0.28
13 29 0.45
ACGTcount: A:0.30, C:0.03, G:0.35, T:0.31
Consensus pattern (12 bp):
TATGGTGATGAT
Found at i:10946184 original size:19 final size:20
Alignment explanation
Indices: 10946137--10946187 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
10946127 GAAATCCCTT
**
10946137 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
10946157 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
10946176 TGAAGATACATG
1 TGAAAATACATG
10946188 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:10949327 original size:17 final size:16
Alignment explanation
Indices: 10949305--10949348 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 16
10949295 TGTAGGAGTC
10949305 TTTTCTTTTCTCTTTT
1 TTTTCTTTTCTCTTTT
10949321 GTTTTCTTCTTTCTCTTTT
1 -TTTTC-T-TTTCTCTTTT
10949340 TTTTCTTTT
1 TTTTCTTTT
10949349 TGTTGCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 3 0.12
17 6 0.24
18 6 0.24
19 10 0.40
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTCTCTTTT
Found at i:10949345 original size:18 final size:19
Alignment explanation
Indices: 10949311--10949346 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10949301 AGTCTTTTCT
10949311 TTTCTCTTTTGTTTTCTTC
1 TTTCTCTTTTGTTTTCTTC
10949330 TTTCTCTTTT-TTTTCTT
1 TTTCTCTTTTGTTTTCTT
10949347 TTTGTTGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTCTCTTTTGTTTTCTTC
Found at i:10949773 original size:13 final size:12
Alignment explanation
Indices: 10949754--10949850 Score: 62
Period size: 13 Copynumber: 8.0 Consensus size: 12
10949744 TTATTGGCGT
10949754 GATATGGTGATG
1 GATATGGTGATG
10949766 GAATATGGTGAT-
1 G-ATATGGTGATG
*
10949778 GATATAGGCG-T-
1 GATAT-GGTGATG
10949789 GATAATGGTGATG
1 GAT-ATGGTGATG
10949802 GACTATGGTGAT-
1 GA-TATGGTGATG
*
10949814 GATATAGGCG-T-
1 GATAT-GGTGATG
*
10949825 GATAATGGAGATG
1 GAT-ATGGTGATG
10949838 GATTATGGTGATG
1 GA-TATGGTGATG
10949851 AAAATAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 21 0.30
12 16 0.23
13 30 0.43
14 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.31
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:10949809 original size:36 final size:36
Alignment explanation
Indices: 10949739--10949851 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
10949729 AATGGTAGGA
* *
10949739 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
10949774 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
10949810 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
10949846 TGATGA
1 TGATGA
10949852 AAATAGTATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 16 0.22
36 56 0.78
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:10952489 original size:17 final size:16
Alignment explanation
Indices: 10952467--10952510 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 16
10952457 TGTAGGAGTC
10952467 TTTTCTTTTCTCTTTT
1 TTTTCTTTTCTCTTTT
10952483 GTTTTCTTCTTTCTCTTTT
1 -TTTTC-T-TTTCTCTTTT
10952502 TTTTCTTTT
1 TTTTCTTTT
10952511 TGTTGCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 3 0.12
17 6 0.24
18 6 0.24
19 10 0.40
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTCTCTTTT
Found at i:10952507 original size:18 final size:19
Alignment explanation
Indices: 10952473--10952508 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10952463 AGTCTTTTCT
10952473 TTTCTCTTTTGTTTTCTTC
1 TTTCTCTTTTGTTTTCTTC
10952492 TTTCTCTTTT-TTTTCTT
1 TTTCTCTTTTGTTTTCTT
10952509 TTTGTTGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTCTCTTTTGTTTTCTTC
Found at i:10952935 original size:13 final size:12
Alignment explanation
Indices: 10952916--10953012 Score: 62
Period size: 13 Copynumber: 8.0 Consensus size: 12
10952906 TTATTGGCGT
10952916 GATATGGTGATG
1 GATATGGTGATG
10952928 GAATATGGTGAT-
1 G-ATATGGTGATG
*
10952940 GATATAGGCG-T-
1 GATAT-GGTGATG
10952951 GATAATGGTGATG
1 GAT-ATGGTGATG
10952964 GACTATGGTGAT-
1 GA-TATGGTGATG
*
10952976 GATATAGGCG-T-
1 GATAT-GGTGATG
*
10952987 GATAATGGAGATG
1 GAT-ATGGTGATG
10953000 GATTATGGTGATG
1 GA-TATGGTGATG
10953013 AAAATAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 21 0.30
12 16 0.23
13 30 0.43
14 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.31
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:10952971 original size:36 final size:36
Alignment explanation
Indices: 10952901--10953013 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
10952891 AATGGTAGGA
* *
10952901 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
10952936 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
10952972 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
10953008 TGATGA
1 TGATGA
10953014 AAATAGTATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 16 0.22
36 56 0.78
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:10953400 original size:19 final size:20
Alignment explanation
Indices: 10953353--10953403 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
10953343 GAAATCCCTT
**
10953353 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
10953373 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
10953392 TGAAGATACATG
1 TGAAAATACATG
10953404 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:10961825 original size:17 final size:16
Alignment explanation
Indices: 10961803--10961846 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 16
10961793 TGTAGGAGTC
10961803 TTTTCTTTTCTCTTTT
1 TTTTCTTTTCTCTTTT
10961819 GTTTTCTTCTTTCTCTTTT
1 -TTTTC-T-TTTCTCTTTT
10961838 TTTTCTTTT
1 TTTTCTTTT
10961847 TGTTGCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 3 0.12
17 6 0.24
18 6 0.24
19 10 0.40
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTCTCTTTT
Found at i:10961843 original size:18 final size:19
Alignment explanation
Indices: 10961809--10961844 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10961799 AGTCTTTTCT
10961809 TTTCTCTTTTGTTTTCTTC
1 TTTCTCTTTTGTTTTCTTC
10961828 TTTCTCTTTT-TTTTCTT
1 TTTCTCTTTTGTTTTCTT
10961845 TTTGTTGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTCTCTTTTGTTTTCTTC
Found at i:10962271 original size:13 final size:12
Alignment explanation
Indices: 10962252--10962348 Score: 62
Period size: 13 Copynumber: 8.0 Consensus size: 12
10962242 TTATTGGCGT
10962252 GATATGGTGATG
1 GATATGGTGATG
10962264 GAATATGGTGAT-
1 G-ATATGGTGATG
*
10962276 GATATAGGCG-T-
1 GATAT-GGTGATG
10962287 GATAATGGTGATG
1 GAT-ATGGTGATG
10962300 GACTATGGTGAT-
1 GA-TATGGTGATG
*
10962312 GATATAGGCG-T-
1 GATAT-GGTGATG
*
10962323 GATAATGGAGATG
1 GAT-ATGGTGATG
10962336 GATTATGGTGATG
1 GA-TATGGTGATG
10962349 AAAATAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 21 0.30
12 16 0.23
13 30 0.43
14 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.31
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:10962307 original size:36 final size:36
Alignment explanation
Indices: 10962237--10962349 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
10962227 AATGGTAGGA
* *
10962237 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
10962272 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
10962308 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
10962344 TGATGA
1 TGATGA
10962350 AAATAGTATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 16 0.22
36 56 0.78
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:10962736 original size:19 final size:20
Alignment explanation
Indices: 10962689--10962739 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
10962679 GAAATCCCTT
**
10962689 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
10962709 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
10962728 TGAAGATACATG
1 TGAAAATACATG
10962740 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:10974233 original size:91 final size:91
Alignment explanation
Indices: 10974077--10974258 Score: 310
Period size: 91 Copynumber: 2.0 Consensus size: 91
10974067 ACTTATAACT
* * * *
10974077 CAAGGACATTAGTACTTGTCATTCCTATATCGGGACAACAATAAGGCTATCTATTCACTTTCATT
1 CAAGGACATCAGTACTTGTCATTCCTAGATCGGGACAACAATAAGACTATCTATTCACTTCCATT
10974142 GAAGAGTGTAGATTCAGCCTACATCA
66 GAAGAGTGTAGATTCAGCCTACATCA
*
10974168 CAAGGACATCAGTACTTGTCATTCCTAGATTGGGACAACAATAAGACTATCTATTCACTTCCATT
1 CAAGGACATCAGTACTTGTCATTCCTAGATCGGGACAACAATAAGACTATCTATTCACTTCCATT
*
10974233 GATGAGTGTAGATTCAGCCTACATCA
66 GAAGAGTGTAGATTCAGCCTACATCA
10974259 AGCGATATTC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 85 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (91 bp):
CAAGGACATCAGTACTTGTCATTCCTAGATCGGGACAACAATAAGACTATCTATTCACTTCCATT
GAAGAGTGTAGATTCAGCCTACATCA
Found at i:10988007 original size:24 final size:21
Alignment explanation
Indices: 10987972--10988014 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
10987962 GGAACATTCT
*
10987972 TTTGAATTTCAAGAGGTACATCA
1 TTTGAATGTCAA-AGG-ACATCA
10987995 TTTGAAATGTCAAAGGACAT
1 TTTG-AATGTCAAAGGACAT
10988015 GTCTTGTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 7 0.39
24 7 0.39
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTGAATGTCAAAGGACATCA
Found at i:10993406 original size:36 final size:36
Alignment explanation
Indices: 10993354--10993466 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
10993344 GATACTATTT
*
10993354 TCATCACCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
10993390 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
10993426 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
10993461 ACATCA
1 TCATCA
10993467 TCCTACCATT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 17 0.24
36 55 0.76
ACGTcount: A:0.33, C:0.36, G:0.04, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:10993409 original size:13 final size:11
Alignment explanation
Indices: 10993354--10993492 Score: 70
Period size: 11 Copynumber: 11.9 Consensus size: 11
10993344 GATACTATTT
10993354 TCATCACCATAA
1 TCATCACCAT-A
*
10993366 TCCATCTCCATTA
1 T-CATCACCA-TA
*
10993379 TCA-CGCCTATA
1 TCATCACC-ATA
10993390 TCATCACCATA
1 TCATCACCATA
10993401 GTCCATCACCATTA
1 -T-CATCACCA-TA
*
10993415 TCA-CGCCTATA
1 TCATCACC-ATA
10993426 TCATCACCATA
1 TCATCACCATA
10993437 TTCCATCACCATA
1 -T-CATCACCATA
*
10993450 TCA-CGCCAATA
1 TCATCACC-ATA
*
10993461 ACATCATCC-TA
1 TCATCA-CCATA
* * *
10993472 CCATTACCATT
1 TCATCACCATA
10993483 TCATCACCAT
1 TCATCACCAT
10993493 TAAATCATCC
Statistics
Matches: 99, Mismatches: 13, Indels: 31
0.69 0.09 0.22
Matches are distributed among these distances:
10 5 0.05
11 44 0.44
12 17 0.17
13 30 0.30
14 3 0.03
ACGTcount: A:0.32, C:0.37, G:0.03, T:0.29
Consensus pattern (11 bp):
TCATCACCATA
Found at i:10993884 original size:17 final size:16
Alignment explanation
Indices: 10993855--10993896 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
10993845 AAAAGCAACA
10993855 AAAAGAAAAAAAAGA-
1 AAAAGAAAAAAAAGAG
10993870 AAGAAGAAAACAAAAGAG
1 AA-AAGAAAA-AAAAGAG
10993888 AAAAGAAAA
1 AAAAGAAAA
10993897 GACTCCTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 2 0.08
16 7 0.29
17 13 0.54
18 2 0.08
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAAAGAG
Found at i:10999158 original size:36 final size:36
Alignment explanation
Indices: 10999106--10999199 Score: 161
Period size: 36 Copynumber: 2.6 Consensus size: 36
10999096 GATACTATTT
*
10999106 TCATCACCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
10999142 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
10999178 TCATCACCATATTCCATCACCA
1 TCATCACCATAATCCATCACCA
10999200 CATCACTTGA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.31, C:0.37, G:0.03, T:0.29
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:11001667 original size:16 final size:17
Alignment explanation
Indices: 11001637--11001671 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
11001627 CCTCTTTGCA
*
11001637 TTTTGCTTTATTTTTTC
1 TTTTGCTTTAGTTTTTC
11001654 TTTT-CTTTAGTTTTTC
1 TTTTGCTTTAGTTTTTC
11001670 TT
1 TT
11001672 CACTTGGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.06, C:0.11, G:0.06, T:0.77
Consensus pattern (17 bp):
TTTTGCTTTAGTTTTTC
Found at i:11007134 original size:19 final size:19
Alignment explanation
Indices: 11007110--11007159 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
11007100 GAAACCCCTT
*
11007110 TGAAAATACATGATTTTGA
1 TGAAAATACATGATTTTAA
11007129 TGAAAATACATGATTTTAA
1 TGAAAATACATGATTTTAA
*
11007148 TGAAGATACATG
1 TGAAAATACATG
11007160 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.34
Consensus pattern (19 bp):
TGAAAATACATGATTTTAA
Found at i:11008097 original size:30 final size:31
Alignment explanation
Indices: 11008058--11008117 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
11008048 ACATGCTGCC
**
11008058 ATGATATCTAAATGATATGCAAACATAATAA
1 ATGATATCTAAAACATATGCAAACATAATAA
*
11008089 ATGA-ATCTAAAACATATGTAAACATAATA
1 ATGATATCTAAAACATATGCAAACATAATA
11008118 TAAAGCTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.53, C:0.10, G:0.08, T:0.28
Consensus pattern (31 bp):
ATGATATCTAAAACATATGCAAACATAATAA
Found at i:11010551 original size:20 final size:19
Alignment explanation
Indices: 11010528--11010598 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 19
11010518 TTTAGCTTGC
11010528 TTTC-TCTTTTTGAACTTCTT
1 TTTCTTCTTTTTGAA-TT-TT
*
11010548 TTTCTTTTTTTCTGAATTTT
1 TTTCTTCTTTT-TGAATTTT
**
11010568 TTTCTTCTTTTTGTCTTTT
1 TTTCTTCTTTTTGAATTTT
*
11010587 CTT-TTCTTTTTG
1 TTTCTTCTTTTTG
11010599 CACTCCAGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
18 9 0.20
19 8 0.18
20 16 0.36
21 7 0.16
22 4 0.09
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.73
Consensus pattern (19 bp):
TTTCTTCTTTTTGAATTTT
Found at i:11011343 original size:19 final size:20
Alignment explanation
Indices: 11011302--11011352 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
11011292 GAAACCCCTT
*
11011302 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
11011322 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
11011341 TGAAGATACATG
1 TGAAAATACATG
11011353 CTCTTAGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:11012253 original size:30 final size:31
Alignment explanation
Indices: 11012214--11012274 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
11012204 ACATGCTGCC
**
11012214 ATGATATCTAAATGATATGCT-AACATAATAA
1 ATGATATCTAAAACATATG-TAAACATAATAA
11012245 ATGA-ATCTAAAACATATGTAAACATAATAA
1 ATGATATCTAAAACATATGTAAACATAATAA
11012275 TATATAGTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 1 0.04
30 22 0.81
31 4 0.15
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.30
Consensus pattern (31 bp):
ATGATATCTAAAACATATGTAAACATAATAA
Found at i:11016083 original size:20 final size:22
Alignment explanation
Indices: 11016054--11016093 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
11016044 ATTTTGGATT
11016054 TTTTGTTTTTGT-TTTTTTGCC
1 TTTTGTTTTTGTATTTTTTGCC
11016075 TTTTG-TTTTGTATTTTTTG
1 TTTTGTTTTTGTATTTTTTG
11016094 AAAAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.03, C:0.05, G:0.15, T:0.78
Consensus pattern (22 bp):
TTTTGTTTTTGTATTTTTTGCC
Found at i:11017994 original size:19 final size:21
Alignment explanation
Indices: 11017970--11018021 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
11017960 CGGCCAAGAG
*
11017970 CATGTATCTTCA-TT-AAAAT
1 CATGTATTTTCATTTAAAAAT
11017989 CATGTATTTTCATTTAAAAAT
1 CATGTATTTTCATTTAAAAAT
11018010 CATGTATTTTCA
1 CATGTATTTTCA
11018022 AAGGGGTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 2 0.07
21 17 0.57
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAAT
Found at i:11018821 original size:11 final size:11
Alignment explanation
Indices: 11018799--11018845 Score: 51
Period size: 11 Copynumber: 4.1 Consensus size: 11
11018789 TTTGAGAATT
11018799 TGGTGATGATA
1 TGGTGATGATA
11018810 TAGGTG-TGATA
1 T-GGTGATGATA
*
11018821 TGGTGACGGAATA
1 TGGTGA-TG-ATA
11018834 TGGTGATGATA
1 TGGTGATGATA
11018845 T
1 T
11018846 AGGCGTGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
10 4 0.13
11 11 0.37
12 6 0.20
13 9 0.30
ACGTcount: A:0.28, C:0.02, G:0.36, T:0.34
Consensus pattern (11 bp):
TGGTGATGATA
Found at i:11018845 original size:35 final size:37
Alignment explanation
Indices: 11018794--11018878 Score: 111
Period size: 35 Copynumber: 2.4 Consensus size: 37
11018784 GGAAATTTGA
* * *
11018794 GAATTTGGTGATGATATAGGTGTGAT-ATGG-TGACG
1 GAATATGGTGATGATATAGGCGTGATAATGGAAGACG
*
11018829 GAATATGGTGATGATATAGGCGTGATAATGGAAGATG
1 GAATATGGTGATGATATAGGCGTGATAATGGAAGACG
*
11018866 GATTATGGTGATG
1 GAATATGGTGATG
11018879 GAAATAGTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
35 24 0.56
36 4 0.09
37 15 0.35
ACGTcount: A:0.29, C:0.02, G:0.36, T:0.32
Consensus pattern (37 bp):
GAATATGGTGATGATATAGGCGTGATAATGGAAGACG
Found at i:11023333 original size:35 final size:37
Alignment explanation
Indices: 11023284--11023370 Score: 124
Period size: 35 Copynumber: 2.4 Consensus size: 37
11023274 TTTGAGAATT
* *
11023284 TGGTGATGATATAGGCGTGAT-ATGG-TGATGGACTA
1 TGGTGATGAAATAGGCGTGATAATGGAAGATGGACTA
*
11023319 TGGTGATGAAATAGGCGTGATAATGGAAGATGGATTA
1 TGGTGATGAAATAGGCGTGATAATGGAAGATGGACTA
11023356 TGGTGATGGAAATAG
1 TGGTGAT-GAAATAG
11023371 TATCTTATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
35 20 0.43
36 4 0.09
37 15 0.33
38 7 0.15
ACGTcount: A:0.31, C:0.03, G:0.37, T:0.29
Consensus pattern (37 bp):
TGGTGATGAAATAGGCGTGATAATGGAAGATGGACTA
Found at i:11027943 original size:15 final size:15
Alignment explanation
Indices: 11027908--11027936 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11027898 GTGCTTCAAC
11027908 TTCTTT-CTTTTCTT
1 TTCTTTGCTTTTCTT
11027922 TTCTTTGCTTTTCTT
1 TTCTTTGCTTTTCTT
11027937 CTTTTTGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (15 bp):
TTCTTTGCTTTTCTT
Found at i:11027990 original size:29 final size:28
Alignment explanation
Indices: 11027929--11027990 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
11027919 CTTTTCTTTG
* * *
11027929 CTTTTCTTCTTTTTGAGTGCTGGATTTT
1 CTTTTCTTCTTTTGGAGTGCTGCAATTT
* *
11027957 TTTTTCATTCTTTTGGAGTGCTTCAATTT
1 CTTTTC-TTCTTTTGGAGTGCTGCAATTT
11027986 CTTTT
1 CTTTT
11027991 TCTTTTTCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.10, C:0.15, G:0.15, T:0.61
Consensus pattern (28 bp):
CTTTTCTTCTTTTGGAGTGCTGCAATTT
Found at i:11028002 original size:5 final size:6
Alignment explanation
Indices: 11027983--11028019 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
11027973 AGTGCTTCAA
**
11027983 TTTCTT TTTCTT TTTCTT TTTGAT TTTCTT TTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT T
11028020 GACTTTGCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.03, C:0.14, G:0.03, T:0.81
Consensus pattern (6 bp):
TTTCTT
Found at i:11028963 original size:91 final size:91
Alignment explanation
Indices: 11028781--11028954 Score: 267
Period size: 91 Copynumber: 1.9 Consensus size: 91
11028771 GGTAGATGAT
* * *
11028781 GCTTGGCCGAATAGGGAGATATCTATTCATCTTGGTGCCTAAATGAACCACATGCAAGGCACATG
1 GCTTGGCCGAATAGGGAGAGAACTATTCATCTTGGCGCCTAAATGAACCACATGCAAGGCACATG
11028846 GGGGCTGATCACATGCAAAACACATG
66 GGGGCTGATCACATGCAAAACACATG
* * * *
11028872 GCTTGGTCGAATAGGGAGAGAACTTTTCATCTTGGCGCCTAAATGATCCACATGCAAGGCACGTG
1 GCTTGGCCGAATAGGGAGAGAACTATTCATCTTGGCGCCTAAATGAACCACATGCAAGGCACATG
* *
11028937 GGGGCTGGTCATATGCAA
66 GGGGCTGATCACATGCAA
11028955 GGTACATGGG
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
91 74 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (91 bp):
GCTTGGCCGAATAGGGAGAGAACTATTCATCTTGGCGCCTAAATGAACCACATGCAAGGCACATG
GGGGCTGATCACATGCAAAACACATG
Found at i:11031564 original size:24 final size:24
Alignment explanation
Indices: 11031537--11031583 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
11031527 CCTCAATGGT
*
11031537 CACAACTTGTGGCACTTCAAGTGA
1 CACAACTTGTGGAACTTCAAGTGA
* * *
11031561 CACATCTTTTTGAACTTCAAGTG
1 CACAACTTGTGGAACTTCAAGTG
11031584 GCATAACTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (24 bp):
CACAACTTGTGGAACTTCAAGTGA
Found at i:11043479 original size:9 final size:10
Alignment explanation
Indices: 11043479--11043522 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
11043469 TTTTGCCTTT
11043479 TTTTTTTGCC
1 TTTTTTTGCC
11043489 TTTTTTTGCC
1 TTTTTTTGCC
11043499 TTTTTTTG--
1 TTTTTTTGCC
11043507 TTTTTTTG--
1 TTTTTTTGCC
11043515 TTTTTTTG
1 TTTTTTTG
11043523 AAAAAAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 16 0.47
10 18 0.53
ACGTcount: A:0.00, C:0.09, G:0.11, T:0.80
Consensus pattern (10 bp):
TTTTTTTGCC
Found at i:11043505 original size:13 final size:13
Alignment explanation
Indices: 11043466--11043495 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
11043456 TTTTTGGCTA
11043466 TTTTTTTGCCTTT
1 TTTTTTTGCCTTT
11043479 TTTTTTTGCCTTT
1 TTTTTTTGCCTTT
11043492 TTTT
1 TTTT
11043496 GCCTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.13, G:0.07, T:0.80
Consensus pattern (13 bp):
TTTTTTTGCCTTT
Found at i:11045270 original size:19 final size:19
Alignment explanation
Indices: 11045246--11045294 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
11045236 TGACATGATT
*
11045246 TTTAATGAAAAAAGAAGAC
1 TTTAATGAAAAAACAAGAC
11045265 TTTAATGAAAAAACAAGAC
1 TTTAATGAAAAAACAAGAC
11045284 TTTAATGAAAA
1 TTTAATGAAAA
11045295 TACATGCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.57, C:0.06, G:0.12, T:0.24
Consensus pattern (19 bp):
TTTAATGAAAAAACAAGAC
Found at i:11062302 original size:43 final size:43
Alignment explanation
Indices: 11062255--11062336 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
11062245 TTATTATTTT
*
11062255 ATTAGGAATTAAGGT-TGGGTTAG-TTATTATTATTTTATTAGGA
1 ATTA-GAATTAAGATAT-GGTTAGTTTATTATTATTTTATTAGGA
* *
11062298 ATTAGAGTTAAGATATGTTTAGTTTATTATTATTTTATT
1 ATTAGAATTAAGATATGGTTAGTTTATTATTATTTTATT
11062337 CATTAGTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 13 0.38
43 21 0.62
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.51
Consensus pattern (43 bp):
ATTAGAATTAAGATATGGTTAGTTTATTATTATTTTATTAGGA
Found at i:11062760 original size:22 final size:22
Alignment explanation
Indices: 11062735--11062776 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
11062725 CAATTCATTT
11062735 ATCTT-TTCTTTATCTTGTTTTA
1 ATCTTATT-TTTATCTTGTTTTA
11062757 ATCTTATTTTTATCTTGTTT
1 ATCTTATTTTTATCTTGTTT
11062777 CTAGCACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.14, C:0.12, G:0.05, T:0.69
Consensus pattern (22 bp):
ATCTTATTTTTATCTTGTTTTA
Found at i:11067715 original size:15 final size:14
Alignment explanation
Indices: 11067684--11067711 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
11067674 TTAGTAATAA
11067684 AAAAATAACCTCAC
1 AAAAATAACCTCAC
11067698 AAAAATAACCTCAC
1 AAAAATAACCTCAC
11067712 CAAACACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.29, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAATAACCTCAC
Found at i:11068120 original size:20 final size:21
Alignment explanation
Indices: 11068090--11068129 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
11068080 TTAAGAAAGG
11068090 AAATGGAAATGGAAAGAAATT
1 AAATGGAAATGGAAAGAAATT
*
11068111 AAAT-GAAATGGATAGAAAT
1 AAATGGAAATGGAAAGAAAT
11068130 GTTATCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.57, C:0.00, G:0.23, T:0.20
Consensus pattern (21 bp):
AAATGGAAATGGAAAGAAATT
Found at i:11068837 original size:27 final size:27
Alignment explanation
Indices: 11068795--11068860 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
11068785 ACACACATGA
*
11068795 CACATGGGTGGCTGGTCATGAGGCACT
1 CACATGGGTGGCTGGTCATAAGGCACT
*
11068822 CACATGGGTGGTTGGTCATAAGGCACT
1 CACATGGGTGGCTGGTCATAAGGCACT
11068849 CACATGGGTGGC
1 CACATGGGTGGC
11068861 ATAGGATGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.20, C:0.21, G:0.36, T:0.23
Consensus pattern (27 bp):
CACATGGGTGGCTGGTCATAAGGCACT
Found at i:11071588 original size:16 final size:16
Alignment explanation
Indices: 11071567--11071598 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
11071557 TCTTCCACCA
11071567 ATGTTAGAATGCAAAT
1 ATGTTAGAATGCAAAT
11071583 ATGTTAGAATGCAAAT
1 ATGTTAGAATGCAAAT
11071599 GAGCTAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (16 bp):
ATGTTAGAATGCAAAT
Found at i:11078264 original size:13 final size:13
Alignment explanation
Indices: 11078246--11078290 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
11078236 CATTGCCATT
*
11078246 TCATCATCATCCA
1 TCATCAACATCCA
*
11078259 TCATCAACATCCT
1 TCATCAACATCCA
*
11078272 TCATCAAGA-CCA
1 TCATCAACATCCA
11078284 TCATCAA
1 TCATCAA
11078291 TTTCATAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 9 0.32
13 19 0.68
ACGTcount: A:0.36, C:0.36, G:0.02, T:0.27
Consensus pattern (13 bp):
TCATCAACATCCA
Found at i:11079254 original size:20 final size:21
Alignment explanation
Indices: 11079217--11079255 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
11079207 GATGGTCTTG
*
11079217 ATGAAGGATGTTGATGATGGA
1 ATGAAGGATGGTGATGATGGA
*
11079238 ATGAA-GATGGTGGTGATG
1 ATGAAGGATGGTGATGATG
11079256 TTGTATCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.31, C:0.00, G:0.41, T:0.28
Consensus pattern (21 bp):
ATGAAGGATGGTGATGATGGA
Found at i:11079636 original size:19 final size:21
Alignment explanation
Indices: 11079593--11079644 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
11079583 GAAACCCCTT
11079593 TGAAAATACATGATTATTAAA
1 TGAAAATACATGATTATTAAA
11079614 TGAAAATACATGATT-TT-AA
1 TGAAAATACATGATTATTAAA
*
11079633 TGAAGATACATG
1 TGAAAATACATG
11079645 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 2 0.07
21 15 0.50
ACGTcount: A:0.48, C:0.06, G:0.13, T:0.33
Consensus pattern (21 bp):
TGAAAATACATGATTATTAAA
Found at i:11083670 original size:19 final size:21
Alignment explanation
Indices: 11083627--11083678 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
11083617 GAAACCCCTT
*
11083627 TGAAAATATATGATTTTTAAA
1 TGAAAATACATGATTTTTAAA
11083648 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGATTTTTAAA
*
11083667 TGAAGATACATG
1 TGAAAATACATG
11083679 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 4 0.14
21 12 0.41
ACGTcount: A:0.46, C:0.04, G:0.13, T:0.37
Consensus pattern (21 bp):
TGAAAATACATGATTTTTAAA
Found at i:11086050 original size:10 final size:10
Alignment explanation
Indices: 11086035--11086059 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
11086025 TTGCTATTTT
11086035 AAAAAAAACA
1 AAAAAAAACA
11086045 AAAAAAAACA
1 AAAAAAAACA
11086055 AAAAA
1 AAAAA
11086060 GCCAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:11093459 original size:24 final size:24
Alignment explanation
Indices: 11093432--11093499 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
11093422 GACATGTCCT
* *
11093432 TTGACGTTCCAACAGTTATGCCAC
1 TTGAAGTTCCAAAAGTTATGCCAC
* * *
11093456 TTGAAGTTCAAAAAGATATGTCAC
1 TTGAAGTTCCAAAAGTTATGCCAC
*
11093480 TTGAAGTGCCAAAAGTTATG
1 TTGAAGTTCCAAAAGTTATG
11093500 ATCATTGAAG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (24 bp):
TTGAAGTTCCAAAAGTTATGCCAC
Found at i:11093515 original size:24 final size:23
Alignment explanation
Indices: 11093439--11093515 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 23
11093429 CCTTTGACGT
* *
11093439 TCCAACAGTTATGCCACTTGAAG
1 TCCAAAAGTTATGTCACTTGAAG
* *
11093462 TTCAAAAAGATATGTCACTTGAAG
1 -TCCAAAAGTTATGTCACTTGAAG
11093486 TGCCAAAAGTTATGATCA-TTGAAG
1 T-CCAAAAGTTATG-TCACTTGAAG
11093510 CTCCAA
1 -TCCAA
11093516 GTTCATTACA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
23 1 0.02
24 39 0.89
25 4 0.09
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (23 bp):
TCCAAAAGTTATGTCACTTGAAG
Found at i:11106360 original size:8 final size:8
Alignment explanation
Indices: 11106349--11106373 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
11106339 TTTGGCTTCT
11106349 TGGATGAA
1 TGGATGAA
11106357 TGGATGAA
1 TGGATGAA
11106365 TGGATGAA
1 TGGATGAA
11106373 T
1 T
11106374 TTCAAAGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.28
Consensus pattern (8 bp):
TGGATGAA
Found at i:11111172 original size:19 final size:21
Alignment explanation
Indices: 11111148--11111199 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
11111138 CGGCCAAGAG
11111148 CATGTATCTTCA-TTAAAA-T
1 CATGTATCTTCATTTAAAAGT
*
11111167 CATGTATTTTCATTTAAAAGT
1 CATGTATCTTCATTTAAAAGT
* *
11111188 CATATATTTTCA
1 CATGTATCTTCA
11111200 AAGGGGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 11 0.38
20 6 0.21
21 12 0.41
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
CATGTATCTTCATTTAAAAGT
Found at i:11111635 original size:19 final size:20
Alignment explanation
Indices: 11111611--11111650 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
11111601 TATCCTTTCT
11111611 TTATTTCATTTT-ATT-CTTA
1 TTATTT-ATTTTCATTACTTA
11111630 TTATTTATTTTCATTACTTA
1 TTATTTATTTTCATTACTTA
11111650 T
1 T
11111651 ATTATTATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 9 0.47
20 5 0.26
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (20 bp):
TTATTTATTTTCATTACTTA
Found at i:11112423 original size:19 final size:21
Alignment explanation
Indices: 11112380--11112431 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
11112370 GAAACCCCTT
11112380 TGAAAATACATGATTTTTAAA
1 TGAAAATACATGATTTTTAAA
*
11112401 TGAAACTACATGA-TTTT-AA
1 TGAAAATACATGATTTTTAAA
*
11112420 TGAAGATACATG
1 TGAAAATACATG
11112432 CTCTTGGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 12 0.43
20 4 0.14
21 12 0.43
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (21 bp):
TGAAAATACATGATTTTTAAA
Found at i:11113985 original size:36 final size:36
Alignment explanation
Indices: 11113945--11114069 Score: 214
Period size: 36 Copynumber: 3.5 Consensus size: 36
11113935 AACACCATCT
11113945 TCCATCTCCATTATCACGCCTTTATCATCACCATAG
1 TCCATCTCCATTATCACGCCTTTATCATCACCATAG
11113981 TCCATCTCCATTATCACGCCTTTATCATCACCATAG
1 TCCATCTCCATTATCACGCCTTTATCATCACCATAG
* * *
11114017 TCCATCTCCATTATCACGCCTATATCGTCACCATAT
1 TCCATCTCCATTATCACGCCTTTATCATCACCATAG
*
11114053 TCCATCACCATTATCAC
1 TCCATCTCCATTATCAC
11114070 ACCCATATTA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 85 1.00
ACGTcount: A:0.26, C:0.37, G:0.05, T:0.33
Consensus pattern (36 bp):
TCCATCTCCATTATCACGCCTTTATCATCACCATAG
Found at i:11114085 original size:72 final size:72
Alignment explanation
Indices: 11113934--11114085 Score: 205
Period size: 72 Copynumber: 2.1 Consensus size: 72
11113924 ACAATCTGTC
** * * *
11113934 CAACACCATCTTCCATCTCCATTATCACGCCTTTATCATCACCATAGTCCATCTCCATTATCACG
1 CAACACCATAGTCCATCTCCATTATCACGCCTATATCATCACCATAGTCCATCACCATTATCACA
**
11113999 CCTTTAT
66 CCCATAT
* * *
11114006 CATCACCATAGTCCATCTCCATTATCACGCCTATATCGTCACCATATTCCATCACCATTATCACA
1 CAACACCATAGTCCATCTCCATTATCACGCCTATATCATCACCATAGTCCATCACCATTATCACA
11114071 CCCATAT
66 CCCATAT
*
11114078 TAACACCA
1 CAACACCA
11114086 ACTTATAAAT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.28, C:0.38, G:0.04, T:0.30
Consensus pattern (72 bp):
CAACACCATAGTCCATCTCCATTATCACGCCTATATCATCACCATAGTCCATCACCATTATCACA
CCCATAT
Found at i:11118535 original size:36 final size:36
Alignment explanation
Indices: 11118488--11118620 Score: 212
Period size: 36 Copynumber: 3.7 Consensus size: 36
11118478 ATCTGTCCAA
*
11118488 CACCATCGTCCATCTCCATTATCACGCCTTTATCAT
1 CACCATAGTCCATCTCCATTATCACGCCTTTATCAT
11118524 CACCATAGTCCATCTCCATTATCACGCCTTTATCAT
1 CACCATAGTCCATCTCCATTATCACGCCTTTATCAT
* * *
11118560 CACCATAGTCCATCTCCATTATCACTCCTATATCGT
1 CACCATAGTCCATCTCCATTATCACGCCTTTATCAT
* *
11118596 CACCATATTCCATCACCATTATCAC
1 CACCATAGTCCATCTCCATTATCAC
11118621 ACCCATATTA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 91 1.00
ACGTcount: A:0.26, C:0.38, G:0.05, T:0.32
Consensus pattern (36 bp):
CACCATAGTCCATCTCCATTATCACGCCTTTATCAT
Found at i:11118636 original size:72 final size:72
Alignment explanation
Indices: 11118485--11118636 Score: 205
Period size: 72 Copynumber: 2.1 Consensus size: 72
11118475 ACAATCTGTC
* * * *
11118485 CAACACCATCGTCCATCTCCATTATCACGCCTTTATCATCACCATAGTCCATCTCCATTATCACG
1 CAACACCATAGTCCATCTCCATTATCACGCCTATATCATCACCATAGTCCATCACCATTATCACA
**
11118550 CCTTTAT
66 CCCATAT
* * * *
11118557 CATCACCATAGTCCATCTCCATTATCACTCCTATATCGTCACCATATTCCATCACCATTATCACA
1 CAACACCATAGTCCATCTCCATTATCACGCCTATATCATCACCATAGTCCATCACCATTATCACA
11118622 CCCATAT
66 CCCATAT
*
11118629 TAACACCA
1 CAACACCA
11118637 ACTTATAAAT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.28, C:0.38, G:0.04, T:0.30
Consensus pattern (72 bp):
CAACACCATAGTCCATCTCCATTATCACGCCTATATCATCACCATAGTCCATCACCATTATCACA
CCCATAT
Found at i:11119464 original size:19 final size:20
Alignment explanation
Indices: 11119427--11119466 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
11119417 GGATAATAAT
11119427 ATAAGTAATGAAAATAAATA
1 ATAAGTAATGAAAATAAATA
11119447 ATAAG-AAT-AAAATGAAATA
1 ATAAGTAATGAAAAT-AAATA
11119466 A
1 A
11119467 AGAAAGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 9 0.47
20 5 0.26
ACGTcount: A:0.68, C:0.00, G:0.10, T:0.23
Consensus pattern (20 bp):
ATAAGTAATGAAAATAAATA
Found at i:11119921 original size:19 final size:21
Alignment explanation
Indices: 11119878--11119929 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
11119868 GAAACCCCTT
11119878 TGAAAATACATGACTTTTAAA
1 TGAAAATACATGACTTTTAAA
11119899 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGACTTTTAAA
*
11119918 TGAAGATACATG
1 TGAAAATACATG
11119930 CTCCTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (21 bp):
TGAAAATACATGACTTTTAAA
Found at i:11122986 original size:33 final size:33
Alignment explanation
Indices: 11122944--11123012 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
11122934 GTTGATGAAT
*
11122944 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
11122977 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
11123010 GAA
1 GAA
11123013 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:11127013 original size:18 final size:19
Alignment explanation
Indices: 11126976--11127014 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
11126966 TGCTTCACTT
*
11126976 TTCTTTTTGCTTTTGATTC
1 TTCTTTTTGCTTTTCATTC
*
11126995 TTCTTTTT-CTTTTCTTTC
1 TTCTTTTTGCTTTTCATTC
11127013 TT
1 TT
11127015 TTGCACTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.03, C:0.18, G:0.05, T:0.74
Consensus pattern (19 bp):
TTCTTTTTGCTTTTCATTC
Found at i:11127474 original size:33 final size:33
Alignment explanation
Indices: 11127432--11127500 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
11127422 GTTGATGAAT
*
11127432 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
11127465 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
11127498 GAA
1 GAA
11127501 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:11132821 original size:1 final size:1
Alignment explanation
Indices: 11132817--11132874 Score: 62
Period size: 1 Copynumber: 58.0 Consensus size: 1
11132807 AAATTTTGGC
* * * ** *
11132817 TTTTTGTTTTTTTTTGTTTTTTTTGTTTTTTTTTTGCTTTTTTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
11132875 GAAAAAAAAT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.90
Consensus pattern (1 bp):
T
Found at i:11132830 original size:10 final size:10
Alignment explanation
Indices: 11132817--11132873 Score: 80
Period size: 10 Copynumber: 5.5 Consensus size: 10
11132807 AAATTTTGGC
11132817 TTTTTGTTTT
1 TTTTTGTTTT
11132827 TTTTTG-TTT
1 TTTTTGTTTT
11132836 TTTTTGTTTTT
1 TTTTTG-TTTT
11132847 TTTTTGCTTTTT
1 TTTTTG--TTTT
11132859 TTTTTGTTTT
1 TTTTTGTTTT
11132869 TTTTT
1 TTTTT
11132874 TGAAAAAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.20
10 15 0.34
11 9 0.20
12 11 0.25
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (10 bp):
TTTTTGTTTT
Found at i:11132831 original size:11 final size:11
Alignment explanation
Indices: 11132817--11132875 Score: 88
Period size: 11 Copynumber: 5.5 Consensus size: 11
11132807 AAATTTTGGC
11132817 TTTTTG-TTTT
1 TTTTTGTTTTT
11132827 TTTTTG--TTT
1 TTTTTGTTTTT
11132836 TTTTTGTTTTT
1 TTTTTGTTTTT
11132847 TTTTTGCTTTTT
1 TTTTTG-TTTTT
11132859 TTTTTGTTTTT
1 TTTTTGTTTTT
11132870 TTTTTG
1 TTTTTG
11132876 AAAAAAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.20
10 6 0.13
11 20 0.43
12 11 0.24
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (11 bp):
TTTTTGTTTTT
Found at i:11135523 original size:19 final size:20
Alignment explanation
Indices: 11135484--11135519 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
11135474 GGATAATAAT
11135484 ATAAGTAATGAAAATAAATA
1 ATAAGTAATGAAAATAAATA
11135504 ATAAG-AAT-AAAATAAA
1 ATAAGTAATGAAAATAAA
11135520 ATAAAGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.50
19 3 0.19
20 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.22
Consensus pattern (20 bp):
ATAAGTAATGAAAATAAATA
Found at i:11135983 original size:19 final size:21
Alignment explanation
Indices: 11135935--11135983 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
11135925 GAAACCCCTT
11135935 TGAAAATACATGACTTTTATA
1 TGAAAATACATGACTTTTATA
11135956 TGAAAATACATGA-TTTTA-A
1 TGAAAATACATGACTTTTATA
*
11135975 TGAAGATAC
1 TGAAAATAC
11135984 GTGCTCTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 9 0.33
20 5 0.19
21 13 0.48
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (21 bp):
TGAAAATACATGACTTTTATA
Found at i:11138302 original size:13 final size:13
Alignment explanation
Indices: 11138284--11138315 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
11138274 TCATCCCATG
11138284 CACAAGGCTGCAC
1 CACAAGGCTGCAC
11138297 CACAAGGCTGCAC
1 CACAAGGCTGCAC
11138310 CACAAG
1 CACAAG
11138316 TGATGTAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.38, G:0.22, T:0.06
Consensus pattern (13 bp):
CACAAGGCTGCAC
Found at i:11139101 original size:90 final size:91
Alignment explanation
Indices: 11138989--11139162 Score: 251
Period size: 90 Copynumber: 1.9 Consensus size: 91
11138979 ATGCTTGGCC
* *
11138989 GAATAGGGAGAGAGCTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGACACAT-GGGGCTGT
1 GAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGACACATGGGGGCTGG
11139053 TCACATGCAAAACACATGGCTTGGGT
66 TCACATGCAAAACACATGGCTTGGGT
* * * * *
11139079 GAATTGGGAGAGAACTCTTCATCTTGGCGCCTAAATGATCCTCATGCAAGGCACATGGGGGCTGG
1 GAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGACACATGGGGGCTGG
* **
11139144 TCATATGCAAGGCACATGG
66 TCACATGCAAAACACATGG
11139163 GGGTTCTAGT
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
90 50 0.68
91 23 0.32
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (91 bp):
GAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGACACATGGGGGCTGG
TCACATGCAAAACACATGGCTTGGGT
Found at i:11140966 original size:23 final size:25
Alignment explanation
Indices: 11140938--11140992 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 25
11140928 AAATCCAACA
11140938 AAGAAAATCAAAGCACTC-AAAA-G
1 AAGAAAATCAAAGCACTCAAAAAGG
* *
11140961 AAGAAATTGAAAGCACTCAAAAAGG
1 AAGAAAATCAAAGCACTCAAAAAGG
11140986 AAGAAAA
1 AAGAAAA
11140993 AGAAAAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 16 0.59
24 4 0.15
25 7 0.26
ACGTcount: A:0.62, C:0.13, G:0.16, T:0.09
Consensus pattern (25 bp):
AAGAAAATCAAAGCACTCAAAAAGG
Found at i:11142296 original size:24 final size:25
Alignment explanation
Indices: 11142250--11142304 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
11142240 ACAGTTATGC
*
11142250 CACTTGAAGTTCAAAAAGATGTG-T
1 CACTTGAAGTGCAAAAAGATGTGAT
* * *
11142274 CACTTGAAGTGCCACAAGTTGTGAT
1 CACTTGAAGTGCAAAAAGATGTGAT
11142299 CA-TTGA
1 CACTTGA
11142305 GGCTCCAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (25 bp):
CACTTGAAGTGCAAAAAGATGTGAT
Found at i:11144871 original size:23 final size:25
Alignment explanation
Indices: 11144843--11144897 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 25
11144833 AAATCCAACA
11144843 AAGAAAATCAAAGCACTC-AAAA-G
1 AAGAAAATCAAAGCACTCAAAAAGG
* *
11144866 AAGAAATTGAAAGCACTCAAAAAGG
1 AAGAAAATCAAAGCACTCAAAAAGG
11144891 AAGAAAA
1 AAGAAAA
11144898 AGAAAAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 16 0.59
24 4 0.15
25 7 0.26
ACGTcount: A:0.62, C:0.13, G:0.16, T:0.09
Consensus pattern (25 bp):
AAGAAAATCAAAGCACTCAAAAAGG
Done.