Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20687664
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 61 of 91
Found at i:14034305 original size:12 final size:12
Alignment explanation
Indices: 14034288--14034314 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
14034278 TTAATCGCGA
14034288 AAATTGAAATTT
1 AAATTGAAATTT
14034300 AAATTGAAATTT
1 AAATTGAAATTT
14034312 AAA
1 AAA
14034315 AATTCAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (12 bp):
AAATTGAAATTT
Found at i:14034466 original size:35 final size:35
Alignment explanation
Indices: 14034416--14034494 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 35
14034406 AAAGAATCAT
14034416 AAAAAATATTAATATAATAATATTAATAAAA-AATG-AA
1 AAAAAATATTAATAT-AT-ATA-T-ATAAAACAATGTAA
14034453 AAAAAATA-T-ATATATATATATAAAACAATGTAA
1 AAAAAATATTAATATATATATATAAAACAATGTAA
14034486 AAATAAATA
1 AAA-AAATA
14034495 AAAAATATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
31 6 0.15
32 5 0.13
33 8 0.21
34 7 0.18
35 4 0.10
36 1 0.03
37 8 0.21
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (35 bp):
AAAAAATATTAATATATATATATAAAACAATGTAA
Found at i:14034873 original size:34 final size:33
Alignment explanation
Indices: 14034835--14034916 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
14034825 GTCCTACTTA
* *
14034835 GACTCAAA-ATGCTTCAGTTTTAGTGTTTCAATAG
1 GACTCAAATATG-TT-AGTTCTAGTATTTCAATAG
*
14034869 GACTCAAATATGTTGGTTCTAGTATTTCAATAG
1 GACTCAAATATGTTAGTTCTAGTATTTCAATAG
*
14034902 GACTCAAATACGTTA
1 GACTCAAATATGTTA
14034917 ATATATTTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 29 0.69
34 10 0.24
35 3 0.07
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37
Consensus pattern (33 bp):
GACTCAAATATGTTAGTTCTAGTATTTCAATAG
Found at i:14034983 original size:11 final size:11
Alignment explanation
Indices: 14034967--14035021 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
14034957 CGGGGCCTGC
14034967 AAAAATAATAA
1 AAAAATAATAA
*
14034978 AAAAATAATAT
1 AAAAATAATAA
**
14034989 ATTAATAATAA
1 AAAAATAATAA
*
14035000 TAATAATAATAA
1 -AAAAATAATAA
*
14035012 ATAAATAATA
1 AAAAATAATA
14035022 TGATAAAATG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
11 26 0.72
12 10 0.28
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAAATAATAA
Found at i:14034987 original size:3 final size:3
Alignment explanation
Indices: 14034970--14035021 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
14034960 GGCCTGCAAA
* *
14034970 AAT AAT AA- AAA AAT AAT -AT ATT AAT AAT AAT AAT AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
14035014 AAAT AAT A
1 -AAT AAT A
14035022 TGATAAAATG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
2 4 0.09
3 32 0.74
4 7 0.16
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14035504 original size:84 final size:83
Alignment explanation
Indices: 14035360--14036137 Score: 677
Period size: 84 Copynumber: 9.4 Consensus size: 83
14035350 TACGCCCTCA
* * * * * * * *
14035360 AGCTGAATGTAATCAAACTCGAAGGTC--T-TTGACAGATAGCCCTTCTTGCCTTGAGCTATGCT
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCT
** *
14035422 ACAAATGATGGTGCCTTTG
66 GTAAATGAT-GTGCCTTGG
* * * * * *
14035441 AGCTGAGTGGAGTCAAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGATTTATGCC
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCT
* ***
14035506 ATAAATGATGTGCCCTCAA
66 GTAAATGATGTG-CCTTGG
* * * * * *
14035525 AGTTGAGTGTAATCGAACTCGAGGGTCTTTG--G-CAGATAGCCCTTCTTGACTTAAGCTATGCT
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCT
*
14035587 GCAAATGATGTGCCTTGG
66 GTAAATGATGTGCCTTGG
* * *
14035605 AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGATAGATAACCCTTCTCGACTTAAGTTATGC
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTTT-GTTGACAGATAACCCTTCTAGACTTAAGTTATGC
* *
14035670 TGTAAACGATATGCCTTGG
65 TGTAAATGATGTGCCTTGG
* * * * * *
14035689 AGCTGGGTGTAGTCGAACTCAAAAGTCTTT-TAGTCACAGATAACCCTTCTAGCCTTGAGTTATG
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTTTGT--TGACAGATAACCCTTCTAGACTTAAGTTATG
* *
14035753 CTGTAAATGATGTGCCCTCGA
64 CTGTAAATGATGTG-CCTTGG
* * * * * * *
14035774 AGCTGAGTGTAATCGAACTAGAGGGTCTTTG--G-TAGATAACCCTTCTCGACTTAAGCTATGTT
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCT
*
14035836 GCAAATGATGTGCCTTGG
66 GTAAATGATGTGCCTTGG
* * * *
14035854 AGCTGAGCGTATTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCA-ACTTAAGTTACG
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTTT-GTTGACAGATAACCCTTCT-AGACTTAAGTTATG
*
14035918 CTGCTAAAT-ATATGCCTTGG
64 CTG-TAAATGATGTGCCTTGG
* * * * * *
14035938 AGCTTAGCGTAGTCGAACTCGAAGGTCTTT-TAGTCACATATAACCCCTT-TAGCCTTGAGTTAT
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTTTGT--TGACAGATAA-CCCTTCTAGACTTAAGTTAT
* * *
14036001 GTTGTAAATGATGTGCCCTCGA
63 GCTGTAAATGATGTG-CCTTGG
* * * * *
14036023 AGCTGAGTGTAATCGAACTCGAGGGTCTTCAGTTGGA-ATATAACCCTTCTTGACTTAAGTTATG
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTT-TGTT-GACAGATAACCCTTCTAGACTTAAGTTATG
*
14036087 CTATAAATGATGTGCCTTGG
64 CTGTAAATGATGTGCCTTGG
* *
14036107 AGCTGAGCGTAGTCGAACTCGAAGGCCTTTG
1 AGCTGAGTGTAGTCGAACTCGAAGGTCTTTG
14036138 GTGGGCACGA
Statistics
Matches: 559, Mismatches: 110, Indels: 54
0.77 0.15 0.07
Matches are distributed among these distances:
80 59 0.11
81 94 0.17
82 3 0.01
83 13 0.02
84 291 0.52
85 97 0.17
86 1 0.00
87 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (83 bp):
AGCTGAGTGTAGTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGCT
GTAAATGATGTGCCTTGG
Found at i:14035648 original size:165 final size:165
Alignment explanation
Indices: 14035353--14036137 Score: 737
Period size: 165 Copynumber: 4.7 Consensus size: 165
14035343 CGGTTGATAC
* * * * * * *
14035353 GCCCTC-AAGCTGAATGTAATCAAACTCGAAGGTC-TTTGACAGATAGCCCTTCTTGCCTTGAGC
1 GCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTTGACTTAAGT
* * * * *
14035416 TATGCTACAAATGATGGTGCCTTTGAGCTGAGTGGAGTCAAACTCGAAGGTCTTTGTTGACAGAT
66 TATGCTGCAAATGAT-GTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGTTGACAGAT
* * * **
14035481 AACCCTTCTAGCCTTGATTTATGCCATAAATGATGT
130 AACCCTTCTAGACTTAAGTTATGCTGTAAATGATGT
* * * * *
14035517 GCCCTCAAAGTTGAGTGTAATCGAACTCGAGGGTC-TTTGGCAGATAGCCCTTCTTGACTTAAGC
1 GCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTTGACTTAAGT
*
14035581 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGATAGAT
66 TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-GTTGACAGAT
* * *
14035646 AACCCTTCTCGACTTAAGTTATGCTGTAAACGATAT
130 AACCCTTCTAGACTTAAGTTATGCTGTAAATGATGT
* * * * * * * * * *
14035682 G-CCTTGGAGCTGGGTGTAGTCGAACTCAAAAGTCTTTTAGTCACAGATAACCCTTCTAGCCTTG
1 GCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTT-G--GCAGATAACCCTTCTTGACTTA
* * * * * * * *
14035746 AGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTAGAGGGTCTTTG--G-TA
63 AGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGTTGACA
* * * *
14035808 GATAACCCTTCTCGACTTAAGCTATGTTGCAAATGATGT
127 GATAACCCTTCTAGACTTAAGTTATGCTGTAAATGATGT
* * * * **
14035847 G-CCTTGGAGCTGAGCGTATTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTA
1 GCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTC-TT--TTGGCAGATAACCCTTCTTGACTTA
* * * *
14035911 AGTTACGCTGCTAAAT-ATATGCCTTGGAGCTTAGCGTAGTCGAACTCGAAGGTCTTT-TAGTCA
63 AGTTATGCTGC-AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGT--TGA
* * * *
14035974 CATATAACCCCTT-TAGCCTTGAGTTATGTTGTAAATGATGT
125 CAGATAA-CCCTTCTAGACTTAAGTTATGCTGTAAATGATGT
* * *
14036015 GCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTCAGTTGGAATATAACCCTTCTTGACTTA
1 GCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTT---TTGGCAGATAACCCTTCTTGACTTA
** *
14036080 AGTTATGCTATAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGCCTTTG
63 AGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTG
14036138 GTGGGCACGA
Statistics
Matches: 508, Mismatches: 92, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
164 94 0.19
165 200 0.39
166 8 0.02
167 1 0.00
168 74 0.15
169 131 0.26
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (165 bp):
GCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTTGACTTAAGT
TATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGTTGACAGATA
ACCCTTCTAGACTTAAGTTATGCTGTAAATGATGT
Found at i:14035841 original size:249 final size:249
Alignment explanation
Indices: 14035475--14036139 Score: 1001
Period size: 249 Copynumber: 2.7 Consensus size: 249
14035465 GTCTTTGTTG
* ** * *
14035475 ACAGATAACCCTTCTAGCCTTGATTTATGCCATAAATGATGTGCCCTCAAAGTTGAGTGTAATCG
1 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
* *
14035540 AACTCGAGGGTCTTTGGCAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGG
66 AACTCGAGGGTCTTTGGAAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGG
* * *
14035605 AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGATAGATAACCCTTCTCGACTTAAGTTATGC
131 AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCAACTTAAGTTACGC
* *
14035670 TG-TAAACGATATGCCTTGGAGCTGGGTGTAGTCGAACTCAAAAGTCTTTTAGTC
196 TGCTAAA-GATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAAGTCTTTTAGTC
14035724 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
* * * *
14035789 AACTAGAGGGTCTTTGGTAGATAACCCTTCTCGACTTAAGCTATGTTGCAAATGATGTGCCTTGG
66 AACTCGAGGGTCTTTGGAAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGG
* *
14035854 AGCTGAGCGTATTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCAACTTAAGTTACGC
131 AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCAACTTAAGTTACGC
* * * *
14035919 TGCTAAATATATGCCTTGGAGCTTAGCGTAGTCGAACTCGAAGGTCTTTTAGTC
196 TGCTAAAGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAAGTCTTTTAGTC
* *
14035973 ACATATAACCCCTT-TAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATC
1 ACAGATAA-CCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATC
* * **
14036037 GAACTCGAGGGTCTTCAGTTGGAATATAACCCTTCTTGACTTAAGTTATGCTATAAATGATGTGC
65 GAACTCGAGGGTC-T---TTGGAAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGC
*
14036102 CTTGGAGCTGAGCGTAGTCGAACTCGAAGGCCTTTGGT
126 CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGT
14036140 GGGCACGATT
Statistics
Matches: 377, Mismatches: 33, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
249 291 0.77
250 10 0.03
253 76 0.20
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (249 bp):
ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
AACTCGAGGGTCTTTGGAAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGG
AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCAACTTAAGTTACGC
TGCTAAAGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAAGTCTTTTAGTC
Found at i:14036477 original size:110 final size:110
Alignment explanation
Indices: 14036262--14036896 Score: 956
Period size: 110 Copynumber: 5.8 Consensus size: 110
14036252 TGTTTCGATG
* * * * *
14036262 CCAAGATCCTTCGCCGTGAAGTTGAAATTGACTC----TGAAACTGGAAAGTTATTTGTTGACTG
1 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
* *
14036323 TCAGCCG-CCCTTCGTTGTGAAGTTGAGCTTGTGTTGTCTCGAGT
66 TCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGT
14036367 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
1 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
14036432 TCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGT
66 TCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGT
* * * *
14036477 CCAATATTCTTCGCTATGAAGTTGAAATTTACTCTGAATGAAACTGAAAAGTTATTTGTTGACAG
1 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
* * * * * *
14036542 TCAGTTGCACCTTCACTGTGAAGTTGAGCTTTTGTTGTCTTGACT
66 TCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGT
* * *
14036587 CCATTATCCTTCGGTGTGAAATTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
1 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
* * *
14036652 TCAGCCACCTCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGT
66 TCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGT
* *
14036697 CCAATATACTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
1 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
*
14036762 TCAGTCGCCCCTTCGATGTGAAGTTGAGCTTGTGTTGTCTCGAGT
66 TCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGT
* * * *
14036807 CCAATATCCCTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTAAAAAGTTGTTTATTGACCG
1 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
*
14036872 TCAGTCGCCCCTTCGCTTTGAAGTT
66 TCAGTCGCCCCTTCGCTGTGAAGTT
14036897 AAGCAACCAC
Statistics
Matches: 476, Mismatches: 49, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
105 32 0.07
109 30 0.06
110 414 0.87
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (110 bp):
CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAG
TCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGT
Found at i:14041073 original size:33 final size:33
Alignment explanation
Indices: 14041035--14041105 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
14041025 AAAATGCTTC
14041035 GGTTTTAGAT-TTCCAATAGGACTCAAATACGTT
1 GGTTTTAG-TGTTCCAATAGGACTCAAATACGTT
*
14041068 GGTTTTAGTGTTTCAATAGGACTCAAATACGTT
1 GGTTTTAGTGTTCCAATAGGACTCAAATACGTT
14041101 GGTTT
1 GGTTT
14041106 ATTTTTTGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 1 0.03
33 35 0.97
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (33 bp):
GGTTTTAGTGTTCCAATAGGACTCAAATACGTT
Found at i:14041171 original size:14 final size:15
Alignment explanation
Indices: 14041152--14041220 Score: 52
Period size: 17 Copynumber: 4.3 Consensus size: 15
14041142 CGAGGCCTAC
14041152 AAAAATAATAA-AAT
1 AAAAATAATAATAAT
14041166 AAAAATATTAATAATAAT
1 -AAAA-A-TAATAATAAT
14041184 AAAAAT-ATATATATAT
1 AAAAATAATA-ATA-AT
*
14041200 ATAAATATATATATAAT
1 AAAAATA-ATA-ATAAT
14041217 AAAA
1 AAAA
14041221 TATTTTTGTA
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
14 3 0.07
15 8 0.18
16 9 0.20
17 15 0.33
18 10 0.22
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AAAAATAATAATAAT
Found at i:14041180 original size:20 final size:18
Alignment explanation
Indices: 14041157--14041191 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14041147 CCTACAAAAA
14041157 TAATAA-AATAAAAATAT
1 TAATAATAATAAAAATAT
14041174 TAATAATAATAAAAATAT
1 TAATAATAATAAAAATAT
14041192 ATATATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAATAATAATAAAAATAT
Found at i:14041186 original size:18 final size:17
Alignment explanation
Indices: 14041157--14041222 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 17
14041147 CCTACAAAAA
14041157 TAATAAAATAAAAATAT
1 TAATAAAATAAAAATAT
14041174 TAATAATAATAAAAATA-
1 TAATAA-AATAAAAATAT
*
14041191 TATATATATATAAATATATAT
1 TA-ATA-AAATAAA-A-ATAT
14041212 ATAATAAAATA
1 -TAATAAAATA
14041223 TTTTTGTAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
17 8 0.20
18 18 0.45
19 2 0.05
20 7 0.17
21 3 0.08
22 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAATAAAATAAAAATAT
Found at i:14041207 original size:16 final size:15
Alignment explanation
Indices: 14041182--14041223 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 15
14041172 ATTAATAATA
14041182 ATAA-AAATATATAT
1 ATAATAAATATATAT
14041196 ATATATAAATATATAT
1 ATA-ATAAATATATAT
14041212 ATAATAAA-ATAT
1 ATAATAAATATAT
14041224 TTTTGTAGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 7 0.27
15 6 0.23
16 13 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAATAAATATATAT
Found at i:14047316 original size:54 final size:51
Alignment explanation
Indices: 14047237--14047340 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 51
14047227 GCTCATAAGC
14047237 TTATTTTTACCAAAATACTTACCATTTAAATTCCATAAGCTCATAAGCTTATTA
1 TTATTTTTACCAAAATACTTACCA-TT--ATTCCATAAGCTCATAAGCTTATTA
** * * *
14047291 TTATTTTTTTCAATATACTTGCCATTATTCCGTAAGCTCATAAGCTTATT
1 TTATTTTTACCAAAATACTTACCATTATTCCATAAGCTCATAAGCTTATT
14047341 TGCATGGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 23 0.51
53 2 0.04
54 20 0.44
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.44
Consensus pattern (51 bp):
TTATTTTTACCAAAATACTTACCATTATTCCATAAGCTCATAAGCTTATTA
Found at i:14051297 original size:6 final size:6
Alignment explanation
Indices: 14051281--14051375 Score: 56
Period size: 6 Copynumber: 16.3 Consensus size: 6
14051271 TCTCTCATTT
* * * *
14051281 TTTTCTC TTTTTC -TTTTC TTTCTC -ATTTC ATTTTT- TTCTTC GTTTTC
1 TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC TTTTTC TTTTTC
* * * * *
14051328 ATTTTC TTTTTC TATTT- TTTTTC TTCTTC TGTTT- TTTTTC TTCTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
14051374 TT
1 TT
14051376 ATAATATATA
Statistics
Matches: 66, Mismatches: 16, Indels: 13
0.69 0.17 0.14
Matches are distributed among these distances:
5 20 0.30
6 39 0.59
7 7 0.11
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (6 bp):
TTTTTC
Found at i:14051302 original size:17 final size:17
Alignment explanation
Indices: 14051278--14051369 Score: 61
Period size: 17 Copynumber: 5.4 Consensus size: 17
14051268 TCATCTCTCA
14051278 TTTT-TTTCTCTTTTTC
1 TTTTCTTTCTCTTTTTC
*
14051294 TTTTCTTTCTC-ATTTC
1 TTTTCTTTCTCTTTTTC
*
14051310 ATTTT-TTTCTTCGTTTTC
1 -TTTTCTTTC-TCTTTTTC
*
14051328 ATTTTCTTTTTCTATTTT-
1 -TTTTCTTTCTCT-TTTTC
14051346 TTTTC-TTCTTCTGTTTT-
1 TTTTCTTTC-TCT-TTTTC
14051363 TTTTCTT
1 TTTTCTT
14051370 CTTCTTATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
16 14 0.23
17 29 0.47
18 12 0.19
19 7 0.11
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTTCTTTCTCTTTTTC
Found at i:14051309 original size:24 final size:24
Alignment explanation
Indices: 14051282--14051340 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
14051272 CTCTCATTTT
*
14051282 TTTCTCTTTTTCTTTTC-TTTCTCA
1 TTTCTCTTTTTCTCTTCGTTT-TCA
14051306 TTTCAT-TTTTT-TCTTCGTTTTCA
1 TTTC-TCTTTTTCTCTTCGTTTTCA
14051329 TTT-TCTTTTTCT
1 TTTCTCTTTTTCT
14051341 ATTTTTTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
21 1 0.03
22 5 0.17
23 11 0.37
24 12 0.40
25 1 0.03
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (24 bp):
TTTCTCTTTTTCTCTTCGTTTTCA
Found at i:14051333 original size:35 final size:35
Alignment explanation
Indices: 14051275--14051369 Score: 110
Period size: 34 Copynumber: 2.8 Consensus size: 35
14051265 TTTTCATCTC
*
14051275 TCATTTTTTTC-TCTTTTTCTTTTCTTTCTC-ATT
1 TCATTTTTTTCTTCGTTTTCTTTTCTTTCTCTATT
*
14051308 TCATTTTTTTCTTCGTTTTCATTTTCTTTTTCTATT
1 TCATTTTTTTCTTCGTTTTC-TTTTCTTTCTCTATT
14051344 T--TTTTTCTTCTTCTGTTTT-TTTTCTT
1 TCATTTTT-TTCTTC-GTTTTCTTTTCTT
14051370 CTTCTTATAA
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
33 11 0.20
34 19 0.35
35 16 0.29
36 9 0.16
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (35 bp):
TCATTTTTTTCTTCGTTTTCTTTTCTTTCTCTATT
Found at i:14051337 original size:23 final size:23
Alignment explanation
Indices: 14051286--14051369 Score: 63
Period size: 23 Copynumber: 3.7 Consensus size: 23
14051276 CATTTTTTTC
14051286 TCTTTTTCTTTTCTTTCTCA-TT
1 TCTTTTTCTTTTCTTTCTCATTT
14051308 TCATTTTT-TTCTTCGTTT-TCATTT
1 TC-TTTTTCTT-TTC-TTTCTCATTT
*
14051332 TCTTTTTCTATTT-TTTTTC-TTCT
1 TCTTTTTCT-TTTCTTTCTCATT-T
14051355 TCTGTTTT-TTTTCTT
1 TCT-TTTTCTTTTCTT
14051370 CTTCTTATAA
Statistics
Matches: 52, Mismatches: 0, Indels: 19
0.73 0.00 0.27
Matches are distributed among these distances:
22 12 0.23
23 25 0.48
24 14 0.27
25 1 0.02
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (23 bp):
TCTTTTTCTTTTCTTTCTCATTT
Found at i:14051370 original size:17 final size:17
Alignment explanation
Indices: 14051311--14051374 Score: 78
Period size: 17 Copynumber: 3.8 Consensus size: 17
14051301 TCTCATTTCA
14051311 TTTTT-TTCTTC-GTTT
1 TTTTTCTTCTTCTGTTT
* *
14051326 TCATTTTCTTTTTCTATTT
1 T--TTTTCTTCTTCTGTTT
14051345 TTTTTCTTCTTCTGTTT
1 TTTTTCTTCTTCTGTTT
14051362 TTTTTCTTCTTCT
1 TTTTTCTTCTTCT
14051375 TATAATATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
15 1 0.02
17 31 0.76
18 5 0.12
19 4 0.10
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTTCTTCTTCTGTTT
Found at i:14059116 original size:21 final size:22
Alignment explanation
Indices: 14059085--14059134 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
14059075 TAAAATAATA
*
14059085 AATTTTGAGTAATTTAAT-TTT
1 AATTTTTAGTAATTTAATATTT
* * *
14059106 TATTTTTAGTATTTTTATATTT
1 AATTTTTAGTAATTTAATATTT
14059128 AATTTTT
1 AATTTTT
14059135 TGAATATTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (22 bp):
AATTTTTAGTAATTTAATATTT
Found at i:14059763 original size:40 final size:41
Alignment explanation
Indices: 14059691--14059866 Score: 112
Period size: 40 Copynumber: 4.3 Consensus size: 41
14059681 GATTTGACAT
* * * **
14059691 TTAGCGGCGTTTTTACAAAAAATGTCGTAATAGGGTGGTTTA
1 TTAGCGGCGTTTTTA-AAAAAATGCCGCAATAGAGTGGTAAA
14059733 TT-GCGGCGTTTGTT-AAAAAATGCCGCAATAGAGTGGTAAA
1 TTAGCGGCGTTT-TTAAAAAAATGCCGCAATAGAGTGGTAAA
* * * * *
14059773 TTAGCGGCGTTTATACCACAAACGCCGCAAT--AGT-TTAACA
1 TTAGCGGCGTTTTTA-AAAAAATGCCGCAATAGAGTGGTAA-A
* ** * * *
14059813 TATAGTGGCG-TTTTAGCTAAAACGCCACAATAGATTGGTAAA
1 T-TAGCGGCGTTTTTA-AAAAAATGCCGCAATAGAGTGGTAAA
14059855 TTAGCGGCGTTT
1 TTAGCGGCGTTT
14059867 ATACCACAAA
Statistics
Matches: 105, Mismatches: 19, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
39 3 0.03
40 45 0.43
41 32 0.30
42 22 0.21
43 3 0.03
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (41 bp):
TTAGCGGCGTTTTTAAAAAAATGCCGCAATAGAGTGGTAAA
Found at i:14059805 original size:82 final size:81
Alignment explanation
Indices: 14059735--14059887 Score: 200
Period size: 82 Copynumber: 1.9 Consensus size: 81
14059725 GTGGTTTATT
* *
14059735 GCGGCGTTTGTTA-AAAAATGCCGCAATAGAGTGGTAAATTAGCGGCGTTTATACCACAAACGCC
1 GCGGCG-TT-TTACAAAAACGCCACAATAGAGTGGTAAATTAGCGGCGTTTATACCACAAACGCC
**
14059799 GCAATAGTTTAACATATA
64 GCAATAGGGTAACATATA
* * * *
14059817 GTGGCGTTTTAGCTAAAACGCCACAATAGATTGGTAAATTAGCGGCGTTTATACCACAAACACCG
1 GCGGCGTTTTA-CAAAAACGCCACAATAGAGTGGTAAATTAGCGGCGTTTATACCACAAACGCCG
14059882 CAATAG
65 CAATAG
14059888 ATTACACATA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 3 0.05
81 2 0.03
82 58 0.92
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (81 bp):
GCGGCGTTTTACAAAAACGCCACAATAGAGTGGTAAATTAGCGGCGTTTATACCACAAACGCCGC
AATAGGGTAACATATA
Found at i:14059823 original size:41 final size:40
Alignment explanation
Indices: 14059778--14060068 Score: 193
Period size: 41 Copynumber: 7.1 Consensus size: 40
14059768 GTAAATTAGC
14059778 GGCGTTTATACCACAAACGCCGCAATAGTTTAACATATAGT
1 GGCGTTTATACCACAAACGCCGCAATAGTTTAACA-ATAGT
* * * *
14059819 GGCGTTT-TAGCTA-AAACGCCACAATAGATTGGTAA-ATTAGC
1 GGCGTTTATA-CCACAAACGCCGCAATAG-TT--TAACAATAGT
* *
14059860 GGCGTTTATACCACAAACACCGCAATAGATTACACATATAGT
1 GGCGTTTATACCACAAACGCCGCAATAGTTTA-ACA-ATAGT
* * * * *
14059902 GGCATTTATTCTTA-AAACGCCGCAATAGTGATAATAAATAGT
1 GGCGTTTATAC-CACAAACGCCGCAATAGT-TTAA-CAATAGT
* * * *
14059944 GGCATTTTTA-AATAAACGCCGCAATAGTGTTAATCAATAGT
1 GGCGTTTATACCACAAACGCCGCAATAGT-TTAA-CAATAGT
* * *
14059985 GGCGTTTTTA-GAAAAACGCCGCAATAGTTTTAATCAATAGT
1 GGCGTTTATACCACAAACGCCGCAATAG-TTTAA-CAATAGT
* * *
14060026 GGCGTTTTTTA--ACAAACGCCACAATAGTGTAATCAATAGT
1 GGCG-TTTATACCACAAACGCCGCAATAGTTTAA-CAATAGT
14060066 GGC
1 GGC
14060069 ATTTTTTTGT
Statistics
Matches: 207, Mismatches: 28, Indels: 31
0.78 0.11 0.12
Matches are distributed among these distances:
39 2 0.01
40 32 0.15
41 105 0.51
42 61 0.29
43 7 0.03
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (40 bp):
GGCGTTTATACCACAAACGCCGCAATAGTTTAACAATAGT
Found at i:14059889 original size:42 final size:42
Alignment explanation
Indices: 14059754--14059890 Score: 167
Period size: 42 Copynumber: 3.3 Consensus size: 42
14059744 GTTAAAAAAT
*
14059754 GCCGCAATAGAGTGGTAAATTAGCGGCGTTTATACCACAAAC
1 GCCGCAATAGATTGGTAAATTAGCGGCGTTTATACCACAAAC
* *
14059796 GCCGCAATAG-TT--TAACATATAGTGGCGTTT-TAGCTA-AAAC
1 GCCGCAATAGATTGGTAA-AT-TAGCGGCGTTTATA-CCACAAAC
*
14059836 GCCACAATAGATTGGTAAATTAGCGGCGTTTATACCACAAAC
1 GCCGCAATAGATTGGTAAATTAGCGGCGTTTATACCACAAAC
*
14059878 ACCGCAATAGATT
1 GCCGCAATAGATT
14059891 ACACATATAG
Statistics
Matches: 79, Mismatches: 8, Indels: 16
0.77 0.08 0.16
Matches are distributed among these distances:
39 3 0.04
40 17 0.22
41 27 0.34
42 29 0.37
43 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (42 bp):
GCCGCAATAGATTGGTAAATTAGCGGCGTTTATACCACAAAC
Found at i:14060060 original size:40 final size:41
Alignment explanation
Indices: 14059897--14060075 Score: 213
Period size: 41 Copynumber: 4.4 Consensus size: 41
14059887 GATTACACAT
* *
14059897 ATAGTGGCATTTATTCT-TAAAACGCCGCAATAGTGATAATAA
1 ATAGTGGCATTT-TT-TAAAAAACGCCGCAATAGTGATAATCA
*
14059939 ATAGTGGCA-TTTTTAAATAAACGCCGCAATAGTGTTAATCA
1 ATAGTGGCATTTTTTAAA-AAACGCCGCAATAGTGATAATCA
* **
14059980 ATAGTGGC-GTTTTTAGAAAAACGCCGCAATAGTTTTAATCA
1 ATAGTGGCATTTTTTA-AAAAACGCCGCAATAGTGATAATCA
* * *
14060021 ATAGTGGCGTTTTTTAACAAACGCCACAATAGTG-TAATCA
1 ATAGTGGCATTTTTTAAAAAACGCCGCAATAGTGATAATCA
14060061 ATAGTGGCATTTTTT
1 ATAGTGGCATTTTTT
14060076 TGTATAAACG
Statistics
Matches: 123, Mismatches: 9, Indels: 12
0.85 0.06 0.08
Matches are distributed among these distances:
39 1 0.01
40 23 0.19
41 82 0.67
42 17 0.14
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.33
Consensus pattern (41 bp):
ATAGTGGCATTTTTTAAAAAACGCCGCAATAGTGATAATCA
Found at i:14060075 original size:82 final size:83
Alignment explanation
Indices: 14059897--14060091 Score: 241
Period size: 82 Copynumber: 2.4 Consensus size: 83
14059887 GATTACACAT
* *** *
14059897 ATAGTGGCATTTATTCTTAAAACGCCGCAATAGTGATAATAAATAGTGGCATTTTTAAATAAACG
1 ATAGTGGCATTTTTTAGAAAAACGCCGCAATAGTGATAATAAATAGTGGCATTTTTAAACAAACG
*
14059962 CCGCAATAGTGTTAATCA
66 CCACAATAGTGTTAATCA
* ** * * *
14059980 ATAGTGGC-GTTTTTAGAAAAACGCCGCAATAGTTTTAATCAATAGTGGCGTTTTTTAACAAACG
1 ATAGTGGCATTTTTTAGAAAAACGCCGCAATAGTGATAATAAATAGTGGCATTTTTAAACAAACG
14060044 CCACAATAGTG-TAATCA
66 CCACAATAGTGTTAATCA
* *
14060061 ATAGTGGCATTTTTTTGTATAAACGCCGCAA
1 ATAGTGGCATTTTTTAG-AAAAACGCCGCAA
14060092 AATGTTAAAT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
81 14 0.15
82 61 0.64
83 20 0.21
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (83 bp):
ATAGTGGCATTTTTTAGAAAAACGCCGCAATAGTGATAATAAATAGTGGCATTTTTAAACAAACG
CCACAATAGTGTTAATCA
Found at i:14060117 original size:82 final size:82
Alignment explanation
Indices: 14059915--14060117 Score: 184
Period size: 82 Copynumber: 2.5 Consensus size: 82
14059905 ATTTATTCTT
* * * * * * *
14059915 AAAACGCCGCAATAG-TGATAATAAATAGTGGCATTTTTAAATAAACGCCGCAATAGTGTTAATC
1 AAAACGCCGCAAAAGTTTA-AATCAATAGTGCCTTTTTTAAACAAACGCCACAATAGTGTTAATC
14059979 AATAGTGGCGTTTTTAGA
65 AATAGTGGCGTTTTTAGA
* * *
14059997 AAAACGCCGCAATAGTTTTAATCAATAGTGGCGTTTTTT-AACAAACGCCACAATAGTG-TAATC
1 AAAACGCCGCAAAAGTTTAAATCAATAGT-GCCTTTTTTAAACAAACGCCACAATAGTGTTAATC
* *
14060060 AATAGTGGCATTTTTTTGTA
65 AATAGTGGC-GTTTTTAG-A
*
14060080 TAAACGCCGCAAAA-TGTTAAAT-AATTAGT-CCTCTTTTT
1 AAAACGCCGCAAAAGT-TTAAATCAA-TAGTGCCT-TTTTT
14060118 CTCCTACTCG
Statistics
Matches: 100, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
81 16 0.16
82 55 0.55
83 29 0.29
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (82 bp):
AAAACGCCGCAAAAGTTTAAATCAATAGTGCCTTTTTTAAACAAACGCCACAATAGTGTTAATCA
ATAGTGGCGTTTTTAGA
Found at i:14061605 original size:83 final size:81
Alignment explanation
Indices: 14061364--14061644 Score: 294
Period size: 83 Copynumber: 3.4 Consensus size: 81
14061354 TATAGGTACA
* * * * * ** * *
14061364 TACTTTAGTGGCTTTTTTATACAAACGCCGCTATAGAATCATACGTTAGTGGCCTTTTTATACAA
1 TACTTTAGTGGC-GTTTTATACAAACGCCGCTAAATACTCATACTTTAGCAGCGTTTTTATATAA
* * *
14061429 ACGTCGTTATATACTAG
65 ACGCCGCTATAAACTAG
* ** * *
14061446 TACTTTAGTGGCGTTTCTATACAAACGCCGCTATATACTCATACTTTAGTGGCGTTTTGAATCTA
1 TACTTTAGTGGCGTTT-TATACAAACGCCGCTAAATACTCATACTTTAGCAGCGTTTT-TATATA
* *
14061511 AACGCTGCTATAAACTCG
64 AACGCCGCTATAAACTAG
*
14061529 TACTTTAGTGGCGTTTTGAATGA-AAACGCCGCTAAATACTCGTACTTTAGCAGCGTTTTTATAT
1 TACTTTAGTGGCGTTTT--AT-ACAAACGCCGCTAAATACTCATACTTTAGCAGCGTTTTTATAT
*
14061593 AAACGCCGCTATAGACTAG
63 AAACGCCGCTATAAACTAG
*
14061612 TACTTTAGTGGCGTTTTTATACAAACGCTGCTA
1 TACTTTAGTGGCG-TTTTATACAAACGCCGCTA
14061645 TAGACTCGTA
Statistics
Matches: 169, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
81 4 0.02
82 62 0.37
83 64 0.38
84 38 0.22
85 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (81 bp):
TACTTTAGTGGCGTTTTATACAAACGCCGCTAAATACTCATACTTTAGCAGCGTTTTTATATAAA
CGCCGCTATAAACTAG
Found at i:14061648 original size:41 final size:41
Alignment explanation
Indices: 14061364--14061690 Score: 311
Period size: 41 Copynumber: 7.9 Consensus size: 41
14061354 TATAGGTACA
* *
14061364 TACTTTAGTGGCTTTTTTATACAAACGCCGCTATAGAATCA-
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACT-AG
* * * * *
14061405 TACGTTAGTGGCCTTTTTATACAAACGTCGTTATATACTAG
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTAG
* *
14061446 TACTTTAGTGGCGTTTCTATACAAACGCCGCTATATACTCA-
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACT-AG
* * * *
14061487 TACTTTAGTGGCGTTTTGA-ATCTAAACGCTGCTATAAACTCG
1 TACTTTAGTGGCGTTTTTATA-C-AAACGCCGCTATAGACTAG
* * * *
14061529 TACTTTAGTGGCGTTTTGAATGA-AAACGCCGCTAAATACTCG
1 TACTTTAGTGGCGTTTT-TAT-ACAAACGCCGCTATAGACTAG
** *
14061571 TACTTTAGCAGCGTTTTTATATAAACGCCGCTATAGACTAG
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTAG
* *
14061612 TACTTTAGTGGCGTTTTTATACAAACGCTGCTATAGACTCG
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTAG
* ** * * *
14061653 TACCCTTAGTGGCACTTTTAGATAAACGCCGCAATAGA
1 TA-CTTTAGTGGCGTTTTTATACAAACGCCGCTATAGA
14061691 TATAATATTT
Statistics
Matches: 238, Mismatches: 38, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
40 3 0.01
41 141 0.59
42 92 0.39
43 1 0.00
45 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (41 bp):
TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTAG
Found at i:14065036 original size:16 final size:16
Alignment explanation
Indices: 14065015--14065052 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14065005 TCAGCTTAAA
14065015 AAAAGTT-TATCAATTT
1 AAAAGTTCTAT-AATTT
14065031 AAAAGTTCTATAATTT
1 AAAAGTTCTATAATTT
*
14065047 AGAAGT
1 AAAAGT
14065053 CATTAGTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (16 bp):
AAAAGTTCTATAATTT
Found at i:14067056 original size:21 final size:21
Alignment explanation
Indices: 14066983--14067095 Score: 104
Period size: 21 Copynumber: 5.4 Consensus size: 21
14066973 AGCGGAAAAT
*
14066983 GAAGCAAG-GGAAGCAAAGAGA
1 GAAGC-AGCGGAAGCACAGAGA
* * *
14067004 GCAGCAGCAGAAGCA-ACCAGA
1 GAAGCAGCGGAAGCACA-GAGA
* * * *
14067025 GCAGCAACGGAAGCAGAGAAA
1 GAAGCAGCGGAAGCACAGAGA
*
14067046 GAAGCTGCGGAAGCACAGAGA
1 GAAGCAGCGGAAGCACAGAGA
*
14067067 GAAGCAGCGGCAGCACAGAGA
1 GAAGCAGCGGAAGCACAGAGA
14067088 GAAGCAGC
1 GAAGCAGC
14067096 ATATCAGCAG
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
20 3 0.04
21 71 0.95
22 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.35, T:0.01
Consensus pattern (21 bp):
GAAGCAGCGGAAGCACAGAGA
Found at i:14067738 original size:42 final size:43
Alignment explanation
Indices: 14067550--14067752 Score: 239
Period size: 43 Copynumber: 4.7 Consensus size: 43
14067540 GTTTTAACAA
* * * *
14067550 AAAAACACCGCTAAACATCATA-ACATATTGCGGCGTTTGTCTG
1 AAAAACGCCGCTAAATATCA-ACACCTATTGCGGCGTTTGTATG
* * * * *
14067593 AGAAACGCTGCTAAATATTAACACCTATTGCGACGTTTTTATG
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTATG
* * * *
14067636 ACAAACGCCGCTAAATATCAACACCTTTTGCGGCGTTTTTATA
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTATG
* *
14067679 AAAAAAGCCACTAAATATCAACACCTATTGCGGCGTTTGT-TG
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTATG
*
14067721 AAAAACGCTGCTAAATATCAACACCTATTGCG
1 AAAAACGCCGCTAAATATCAACACCTATTGCG
14067753 ACATTTTTCT
Statistics
Matches: 135, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
42 31 0.23
43 104 0.77
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTATG
Found at i:14067760 original size:85 final size:86
Alignment explanation
Indices: 14067603--14067760 Score: 237
Period size: 85 Copynumber: 1.8 Consensus size: 86
14067593 AGAAACGCTG
* * * *
14067603 CTAAATATTAACACCTATTGCGACGTTTTTATGACAAACGCCGCTAAATATCAACACCTTTTGCG
1 CTAAATATCAACACCTATTGCGACGTTTGTATGAAAAACGCCGCTAAATATCAACACCTATTGCG
* *
14067668 GCGTTTTTATAAAAAAAGCCA
66 ACATTTTTATAAAAAAAGCCA
* *
14067689 CTAAATATCAACACCTATTGCGGCGTTTGT-TGAAAAACGCTGCTAAATATCAACACCTATTGCG
1 CTAAATATCAACACCTATTGCGACGTTTGTATGAAAAACGCCGCTAAATATCAACACCTATTGCG
14067753 ACATTTTT
66 ACATTTTT
14067761 CTCATCTCCT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 37 0.58
86 27 0.42
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (86 bp):
CTAAATATCAACACCTATTGCGACGTTTGTATGAAAAACGCCGCTAAATATCAACACCTATTGCG
ACATTTTTATAAAAAAAGCCA
Found at i:14067760 original size:128 final size:130
Alignment explanation
Indices: 14067512--14067760 Score: 342
Period size: 128 Copynumber: 1.9 Consensus size: 130
14067502 TAGCAGAAAT
*
14067512 GCCGCAAAACATCAACACCTACTGCGGAGTTTTAACAAAAAAACACCGCTAAACATCATAACATA
1 GCCGCAAAACATCAACACCTACTGCGGAGTTTTAACAAAAAAACACCACTAAACATCATAACATA
* * *
14067577 TTGCGGCGTTTGTCTGAGAAACGCTGCTAAATATTAACACCTATTGCGACGTTTTTATGACAAAC
66 TTGCGGCGTTTGTCTGAAAAACGCTGCTAAATATCAACACCTATTGCGACATTTTTATGACAAAC
* * ** * * * * * *
14067642 GCCGCTAAATATCAACACCTTTTGCGGCGTTTTTATAAAAAAA-GCCACTAAATATCA-ACACCT
1 GCCGCAAAACATCAACACCTACTGCGGAGTTTTAACAAAAAAACACCACTAAACATCATA-ACAT
14067705 ATTGCGGCGTTTGT-TGAAAAACGCTGCTAAATATCAACACCTATTGCGACATTTTT
65 ATTGCGGCGTTTGTCTGAAAAACGCTGCTAAATATCAACACCTATTGCGACATTTTT
14067761 CTCATCTCCT
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
128 40 0.38
129 28 0.27
130 36 0.35
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (130 bp):
GCCGCAAAACATCAACACCTACTGCGGAGTTTTAACAAAAAAACACCACTAAACATCATAACATA
TTGCGGCGTTTGTCTGAAAAACGCTGCTAAATATCAACACCTATTGCGACATTTTTATGACAAAC
Found at i:14068997 original size:24 final size:24
Alignment explanation
Indices: 14068967--14069070 Score: 68
Period size: 24 Copynumber: 4.4 Consensus size: 24
14068957 TTAACGCTAA
14068967 ACGAACATATAAACGAACACGTTC
1 ACGAACATATAAACGAACACGTTC
** * * **
14068991 GTGAACAT-TAAATGAACGC-TAA
1 ACGAACATATAAACGAACACGTTC
** * *
14069013 ACGAACATATTCATGAACACATTC
1 ACGAACATATAAACGAACACGTTC
** *
14069037 ATAAACATATAAACAAACACGTTC
1 ACGAACATATAAACGAACACGTTC
*
14069061 GCGAACATAT
1 ACGAACATAT
14069071 TCATGAATAT
Statistics
Matches: 55, Mismatches: 23, Indels: 4
0.67 0.28 0.05
Matches are distributed among these distances:
22 7 0.13
23 17 0.31
24 31 0.56
ACGTcount: A:0.46, C:0.21, G:0.12, T:0.21
Consensus pattern (24 bp):
ACGAACATATAAACGAACACGTTC
Found at i:14069044 original size:46 final size:46
Alignment explanation
Indices: 14068948--14069049 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
14068938 TATATAAACG
* * * * *
14068948 AACAATAAATTAACGCTAAACGAACATATAAACGAACACGTTCGTG
1 AACATTAAATGAACGCTAAACGAACATATAAACGAACACATTCATA
** *
14068994 AACATTAAATGAACGCTAAACGAACATATTCATGAACACATTCATA
1 AACATTAAATGAACGCTAAACGAACATATAAACGAACACATTCATA
14069040 AACATATAAA
1 AACAT-TAAA
14069050 CAAACACGTT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
46 43 0.91
47 4 0.09
ACGTcount: A:0.50, C:0.19, G:0.10, T:0.22
Consensus pattern (46 bp):
AACATTAAATGAACGCTAAACGAACATATAAACGAACACATTCATA
Found at i:14069823 original size:23 final size:24
Alignment explanation
Indices: 14069777--14069826 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
14069767 AATTATAAAA
14069777 ATAATAAATAAGATATAATATTAT
1 ATAATAAATAAGATATAATATTAT
*
14069801 ATAA-AAATAATATA-AATATT-T
1 ATAATAAATAAGATATAATATTAT
14069822 ATAAT
1 ATAAT
14069827 TTTTTTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.21
22 6 0.25
23 9 0.38
24 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (24 bp):
ATAATAAATAAGATATAATATTAT
Found at i:14070932 original size:18 final size:18
Alignment explanation
Indices: 14070905--14070961 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
14070895 ATATAAATTG
14070905 TATA-TATAAACTATATT
1 TATATTATAAACTATATT
14070922 TATATTATAAACTATA-T
1 TATATTATAAACTATATT
* * *
14070939 AATTATTATAAGCTATATA
1 TA-TATTATAAACTATATT
14070958 TATA
1 TATA
14070962 AATTATGTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
17 6 0.18
18 26 0.79
19 1 0.03
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (18 bp):
TATATTATAAACTATATT
Found at i:14070966 original size:20 final size:18
Alignment explanation
Indices: 14070909--14070967 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
14070899 AAATTGTATA
*
14070909 TATAAACTATAT-TTATAT
1 TATAAACTATATAATA-AT
*
14070927 TATAAACTATATAATTAT
1 TATAAACTATATAATAAT
*
14070945 TATAAGCTATATATATAAAT
1 TATAAACTATATA-AT-AAT
14070965 TAT
1 TAT
14070968 GTTTATATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
18 26 0.76
19 3 0.09
20 5 0.15
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (18 bp):
TATAAACTATATAATAAT
Found at i:14070983 original size:26 final size:25
Alignment explanation
Indices: 14070953--14071023 Score: 74
Period size: 28 Copynumber: 2.8 Consensus size: 25
14070943 ATTATAAGCT
* *
14070953 ATATATATAAATTATGTTTATATGAAC
1 ATATATATAAACTATG--TATATAAAC
14070980 TATATATATAAACTATGTATATAAAC
1 -ATATATATAAACTATGTATATAAAC
*
14071006 -TATATATATA-TATGTATA
1 ATATATATAAACTATGTATA
14071024 AACTATAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
23 8 0.20
24 9 0.22
26 8 0.20
28 15 0.38
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (25 bp):
ATATATATAAACTATGTATATAAAC
Found at i:14071017 original size:28 final size:27
Alignment explanation
Indices: 14070945--14071015 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 27
14070935 ATATAATTAT
* *
14070945 TATAAGCTATATATATAAATTATGTTTA
1 TATAAACTATATATATAAACTATG-TTA
*
14070973 TATGAACTATATATATAAACTATG-TA
1 TATAAACTATATATATAAACTATGTTA
14070999 TATAAACTATATATATA
1 TATAAACTATATATATA
14071016 TATGTATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 18 0.46
28 21 0.54
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (27 bp):
TATAAACTATATATATAAACTATGTTA
Found at i:14071030 original size:13 final size:13
Alignment explanation
Indices: 14070892--14071015 Score: 87
Period size: 13 Copynumber: 9.6 Consensus size: 13
14070882 AATATAAGTT
* *
14070892 TATATATAAATTG
1 TATATATAAACTA
14070905 TATATATAAACTA
1 TATATATAAACTA
* *
14070918 TAT-T-TATATTA
1 TATATATAAACTA
*
14070929 TAAACTATATAA-T-
1 TATA-TATA-AACTA
*
14070942 TAT-TATAAGCTA
1 TATATATAAACTA
*
14070954 TATATATAAATTA
1 TATATATAAACTA
* *
14070967 TGTTTATATGAACTA
1 --TATATATAAACTA
14070982 TATATATAAACTA
1 TATATATAAACTA
*
14070995 TGTATATAAACTA
1 TATATATAAACTA
14071008 TATATATA
1 TATATATA
14071016 TATGTATAAA
Statistics
Matches: 85, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
10 1 0.01
11 12 0.14
12 4 0.05
13 54 0.64
14 3 0.04
15 11 0.13
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (13 bp):
TATATATAAACTA
Found at i:14071399 original size:20 final size:20
Alignment explanation
Indices: 14071376--14071419 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
14071366 TATAGTACAT
* *
14071376 GTATGTATAAACTATGTATA
1 GTATATATAAACTATATATA
14071396 GTATATATAAACTATATATA
1 GTATATATAAACTATATATA
14071416 -TATA
1 GTATA
14071420 ACCTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (20 bp):
GTATATATAAACTATATATA
Found at i:14071444 original size:15 final size:15
Alignment explanation
Indices: 14071397--14071445 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
14071387 CTATGTATAG
*
14071397 TATATATAAACTATA
1 TATATATAAACCATA
14071412 TATATAT-AACCTATATA
1 TATATATAAACC---ATA
14071429 TATATATAAACCATA
1 TATATATAAACCATA
14071444 TA
1 TA
14071446 AAGTAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
14 3 0.10
15 12 0.41
17 10 0.34
18 4 0.14
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (15 bp):
TATATATAAACCATA
Found at i:14071445 original size:13 final size:15
Alignment explanation
Indices: 14071392--14071434 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
14071382 ATAAACTATG
*
14071392 TATAGTATATATAAAC
1 TATA-TATATATAACC
14071408 TATATATATATAACC
1 TATATATATATAACC
14071423 TATATATATATA
1 TATATATATATA
14071435 TAAACCATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (15 bp):
TATATATATATAACC
Found at i:14071563 original size:28 final size:28
Alignment explanation
Indices: 14071523--14071606 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 28
14071513 TTATAGAAAG
14071523 CCTAAATCCTAAATCCTAAACTCTAAAC
1 CCTAAATCCTAAATCCTAAACTCTAAAC
* * * *
14071551 CCTAAATCATAAATCATAAACTATAGAC
1 CCTAAATCCTAAATCCTAAACTCTAAAC
* * *
14071579 CTTAAACCCTAAATCCTAAACCCTAAAC
1 CCTAAATCCTAAATCCTAAACTCTAAAC
14071607 ACTGTGCATA
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (28 bp):
CCTAAATCCTAAATCCTAAACTCTAAAC
Found at i:14071606 original size:7 final size:7
Alignment explanation
Indices: 14071523--14071606 Score: 60
Period size: 7 Copynumber: 12.0 Consensus size: 7
14071513 TTATAGAAAG
*
14071523 CCTAAAT
1 CCTAAAC
*
14071530 CCTAAAT
1 CCTAAAC
14071537 CCTAAAC
1 CCTAAAC
*
14071544 TCTAAAC
1 CCTAAAC
*
14071551 CCTAAAT
1 CCTAAAC
* *
14071558 CATAAAT
1 CCTAAAC
*
14071565 CATAAAC
1 CCTAAAC
** *
14071572 TATAGAC
1 CCTAAAC
*
14071579 CTTAAAC
1 CCTAAAC
*
14071586 CCTAAAT
1 CCTAAAC
14071593 CCTAAAC
1 CCTAAAC
14071600 CCTAAAC
1 CCTAAAC
14071607 ACTGTGCATA
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 63 1.00
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (7 bp):
CCTAAAC
Found at i:14071710 original size:20 final size:20
Alignment explanation
Indices: 14071687--14071730 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
14071677 TATAGTACAT
* *
14071687 GTATGTATAAACTATGTATA
1 GTATATATAAACTATATATA
14071707 GTATATATAAACTATATATA
1 GTATATATAAACTATATATA
14071727 -TATA
1 GTATA
14071731 ACCTATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (20 bp):
GTATATATAAACTATATATA
Found at i:14071728 original size:15 final size:15
Alignment explanation
Indices: 14071703--14071744 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
14071693 ATAAACTATG
14071703 TATAGTATATATAAAC
1 TATA-TATATATAAAC
*
14071719 TATATATATATAACC
1 TATATATATATAAAC
14071734 TATATA-ATATA
1 TATATATATATA
14071745 CAATCTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 5 0.20
15 16 0.64
16 4 0.16
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.40
Consensus pattern (15 bp):
TATATATATATAAAC
Found at i:14071947 original size:14 final size:14
Alignment explanation
Indices: 14071930--14071990 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
14071920 TAATATAGTA
14071930 TATAGTTTATAAAC
1 TATAGTTTATAAAC
* * *
14071944 TATACTATATTAA-
1 TATAGTTTATAAAC
* *
14071957 TATTAATTATATTAAC
1 TA-TAGTT-TATAAAC
14071973 TATAGTTTATAAAC
1 TATAGTTTATAAAC
14071987 TATA
1 TATA
14071991 CTATATAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
13 2 0.05
14 23 0.62
15 10 0.27
16 2 0.05
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (14 bp):
TATAGTTTATAAAC
Found at i:14071980 original size:43 final size:40
Alignment explanation
Indices: 14071906--14072018 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 40
14071896 TAATATCTTA
*
14071906 ACTATAATTTATATTAATATAGTATATAGTTTATAAACTAT
1 ACTAT-ATTAATATTAATATAGTATATAGTTTATAAACTAT
*
14071947 ACTATATTAATATTAATTATATTAACTATAGTTTATAAACTAT
1 ACTATATTAATATTAA-TATAGT-A-TATAGTTTATAAACTAT
*
14071990 ACTATA-TAAT-TT-ATA-A-CATATAGTTTATA
1 ACTATATTAATATTAATATAGTATATAGTTTATA
14072019 TTAATATTAA
Statistics
Matches: 66, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
35 11 0.17
36 1 0.02
38 1 0.02
39 2 0.03
40 11 0.17
41 12 0.18
42 5 0.08
43 23 0.35
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (40 bp):
ACTATATTAATATTAATATAGTATATAGTTTATAAACTAT
Found at i:14071997 original size:14 final size:14
Alignment explanation
Indices: 14071937--14071998 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
14071927 GTATATAGTT
14071937 TATAAACTATACTA
1 TATAAACTATACTA
* *
14071951 TATTAA-TATTAATTA
1 TATAAACTA-T-ACTA
* * *
14071966 TATTAACTATAGTT
1 TATAAACTATACTA
14071980 TATAAACTATACTA
1 TATAAACTATACTA
14071994 TATAA
1 TATAA
14071999 TTTATAACAT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
13 2 0.05
14 24 0.63
15 10 0.26
16 2 0.05
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.44
Consensus pattern (14 bp):
TATAAACTATACTA
Found at i:14072029 original size:66 final size:64
Alignment explanation
Indices: 14071877--14072097 Score: 197
Period size: 64 Copynumber: 3.4 Consensus size: 64
14071867 TTAATGTACT
* * * *
14071877 ATATAGTTTATATTAATGTTAA-TATCTTAACTATAATTTATATTAATATAGTATATAGTTTATA
1 ATATAGTTTATATTAATATTAATTATATTAACTAT-ATTTATA-TAATATACTATATAATTTATA
14071941 A
64 A
*
14071942 ACTATA--CTATATTAATATTAATTATATTAACTATAGTTTATA-AACTATACTATATAATTTAT
1 A-TATAGTTTATATTAATATTAATTATATTAACTATA-TTTATATAA-TATACTATATAATTTAT
14072004 AA
63 AA
* * * *
14072006 CATATAGTTTATATTAATATTAATTTTA-TAGACTATATTTATATTAATATTAAT-TACAAATTA
1 -ATATAGTTTATATTAATATTAATTATATTA-ACTATATTTATA-TAATA-TACTATATAATTTA
*
14072069 CAA
62 TAA
*
14072072 AT-TA-TATTATATTAATATTAAATATA
1 ATATAGT-TTATATTAATATTAATTATA
14072098 ATATATAATT
Statistics
Matches: 131, Mismatches: 13, Indels: 25
0.78 0.08 0.15
Matches are distributed among these distances:
63 3 0.02
64 55 0.42
65 29 0.22
66 39 0.30
67 5 0.04
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (64 bp):
ATATAGTTTATATTAATATTAATTATATTAACTATATTTATATAATATACTATATAATTTATAA
Found at i:14072047 original size:30 final size:30
Alignment explanation
Indices: 14071878--14072060 Score: 142
Period size: 30 Copynumber: 5.8 Consensus size: 30
14071868 TAATGTACTA
* *
14071878 TATAGTTTATATTAATGTTAATATCT-TAAC
1 TATAGTTTATATTAATATTAAT-TTTATAAC
*
14071908 TATAATTTATATTAATATAGTATATAGTTTATAAAC
1 TATAGTTTATATTAATAT--TA-AT--TTTAT-AAC
* *
14071944 TATA--CTATATTAATATTAATTATATTAAC
1 TATAGTTTATATTAATATTAATTTTA-TAAC
*
14071973 TATAGTTTATAAACTATACTATATAA-TTTATAAC
1 TATAGTTTAT--A-T-TAATAT-TAATTTTATAAC
14072007 ATATAGTTTATATTAATATTAATTTTATAGAC
1 -TATAGTTTATATTAATATTAATTTTATA-AC
14072039 TATA-TTTATATTAATATTAATT
1 TATAGTTTATATTAATATTAATT
14072061 ACAAATTACA
Statistics
Matches: 126, Mismatches: 10, Indels: 34
0.74 0.06 0.20
Matches are distributed among these distances:
29 10 0.08
30 38 0.30
31 20 0.16
32 7 0.06
33 4 0.03
34 18 0.14
35 19 0.15
36 10 0.08
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (30 bp):
TATAGTTTATATTAATATTAATTTTATAAC
Found at i:14072094 original size:28 final size:27
Alignment explanation
Indices: 14072044--14072147 Score: 69
Period size: 28 Copynumber: 3.9 Consensus size: 27
14072034 TAGACTATAT
*
14072044 TTATATTAATATTAAT-TACAAATTACAAA
1 TTATATT-ATATTAATAT-TAAATTA-AAA
*
14072073 TTATATTATATTAATATTAAA-TATAA
1 TTATATTATATTAATATTAAATTAAAA
*
14072099 TATATAATTATTTTAATATT-AATTATAAA
1 T-TAT-ATTATATTAATATTAAATTA-AAA
*
14072128 -TA-GTT-TATTAATA-TAAATTA
1 TTATATTATATTAATATTAAATTA
14072148 TATAGGGATG
Statistics
Matches: 63, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
23 1 0.02
24 12 0.19
25 2 0.03
26 3 0.05
27 9 0.14
28 26 0.41
29 10 0.16
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (27 bp):
TTATATTATATTAATATTAAATTAAAA
Found at i:14072924 original size:25 final size:24
Alignment explanation
Indices: 14072896--14072949 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
14072886 CCCTAAACCT
*
14072896 AACTCAAAACTAAACTCAAACCCTA
1 AACTCAAAACTAAACCCAAACCC-A
*
14072921 AACTCAAACCTAAACCCAAACCCA
1 AACTCAAAACTAAACCCAAACCCA
14072945 AACTC
1 AACTC
14072950 GAACCCGACC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.50, C:0.37, G:0.00, T:0.13
Consensus pattern (24 bp):
AACTCAAAACTAAACCCAAACCCA
Found at i:14072954 original size:12 final size:12
Alignment explanation
Indices: 14072896--14072955 Score: 66
Period size: 12 Copynumber: 4.9 Consensus size: 12
14072886 CCCTAAACCT
* *
14072896 AACTCAAAACTA
1 AACTCAAACCCA
14072908 AACTCAAACCCTA
1 AACTCAAACCC-A
*
14072921 AACTCAAACCTA
1 AACTCAAACCCA
*
14072933 AACCCAAACCCA
1 AACTCAAACCCA
*
14072945 AACTCGAACCC
1 AACTCAAACCC
14072956 GACCTAAACT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
12 29 0.73
13 11 0.28
ACGTcount: A:0.48, C:0.38, G:0.02, T:0.12
Consensus pattern (12 bp):
AACTCAAACCCA
Found at i:14073003 original size:17 final size:17
Alignment explanation
Indices: 14072981--14073013 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14072971 CTGAATTTGA
*
14072981 ATCCAAACCCAAACCCG
1 ATCCAAACACAAACCCG
14072998 ATCCAAACACAAACCC
1 ATCCAAACACAAACCC
14073014 AAATTCAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.45, G:0.03, T:0.06
Consensus pattern (17 bp):
ATCCAAACACAAACCCG
Found at i:14073229 original size:20 final size:20
Alignment explanation
Indices: 14073200--14073238 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14073190 TATCCAGGTA
*
14073200 TGTTTATTATTTTATTATTT
1 TGTTTATTATTTTAATATTT
*
14073220 TGTTTTTTATTTTAATATT
1 TGTTTATTATTTTAATATT
14073239 GTTCATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (20 bp):
TGTTTATTATTTTAATATTT
Found at i:14076228 original size:12 final size:11
Alignment explanation
Indices: 14076200--14076234 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
14076190 TTGAATTAAC
14076200 TCAAATGTTAT
1 TCAAATGTTAT
*
14076211 TCAAATTTTAT
1 TCAAATGTTAT
14076222 ATCAAATGTTAT
1 -TCAAATGTTAT
14076234 T
1 T
14076235 TAAAATATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.49
Consensus pattern (11 bp):
TCAAATGTTAT
Found at i:14076812 original size:16 final size:16
Alignment explanation
Indices: 14076764--14076819 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
14076754 TTTCTTCCAT
14076764 GGTAATATAT-AAATCA
1 GGTAA-ATATCAAATCA
* * **
14076780 GATAAATGTCATGTCA
1 GGTAAATATCAAATCA
14076796 GGTAAATATCAAATCA
1 GGTAAATATCAAATCA
*
14076812 GGTCAATA
1 GGTAAATA
14076820 ACAAGTTAGA
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
15 3 0.10
16 27 0.90
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.29
Consensus pattern (16 bp):
GGTAAATATCAAATCA
Found at i:14078922 original size:11 final size:11
Alignment explanation
Indices: 14078906--14078960 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
14078896 GGATTAGAGT
14078906 TTAATAAAATA
1 TTAATAAAATA
14078917 TTAATAAAATA
1 TTAATAAAATA
* **
14078928 --AATTTGAGTTA
1 TTAA--TAAAATA
14078939 TTAATAAAATA
1 TTAATAAAATA
14078950 TTAATAAAATA
1 TTAATAAAATA
14078961 AACTTGAGTT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 2 0.06
11 30 0.88
13 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (11 bp):
TTAATAAAATA
Found at i:14078943 original size:33 final size:33
Alignment explanation
Indices: 14078906--14078977 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
14078896 GGATTAGAGT
*
14078906 TTAATAAAATATTAATAAAATAAATTTGAGTTA
1 TTAATAAAATATTAATAAAATAAACTTGAGTTA
14078939 TTAATAAAATATTAATAAAATAAACTTGAGTTA
1 TTAATAAAATATTAATAAAATAAACTTGAGTTA
*
14078972 TAAATA
1 TTAATA
14078978 GATGTCATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.56, C:0.01, G:0.06, T:0.38
Consensus pattern (33 bp):
TTAATAAAATATTAATAAAATAAACTTGAGTTA
Found at i:14079877 original size:22 final size:23
Alignment explanation
Indices: 14079834--14079878 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
14079824 AAGATTTAAA
* **
14079834 ATATATTAAAATATTATTATTTT
1 ATATATTAAAATATCAACATTTT
14079857 ATATATT-AAATATCAACATTTT
1 ATATATTAAAATATCAACATTTT
14079879 CAAGAGGCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (23 bp):
ATATATTAAAATATCAACATTTT
Found at i:14080653 original size:14 final size:14
Alignment explanation
Indices: 14080636--14080683 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
14080626 TATTAAAATA
14080636 TTATACCTATAATT
1 TTATACCTATAATT
** * *
14080650 TTATAAATAAAAATA
1 TTATACCT-ATAATT
14080665 TTATACCTATAATT
1 TTATACCTATAATT
14080679 TTATA
1 TTATA
14080684 AATAAAAATA
Statistics
Matches: 25, Mismatches: 8, Indels: 2
0.71 0.23 0.06
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (14 bp):
TTATACCTATAATT
Found at i:14080662 original size:29 final size:29
Alignment explanation
Indices: 14080630--14080696 Score: 134
Period size: 29 Copynumber: 2.3 Consensus size: 29
14080620 TATTATTATT
14080630 AAAATATTATACCTATAATTTTATAAATA
1 AAAATATTATACCTATAATTTTATAAATA
14080659 AAAATATTATACCTATAATTTTATAAATA
1 AAAATATTATACCTATAATTTTATAAATA
14080688 AAAATATTA
1 AAAATATTA
14080697 AAATTATGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (29 bp):
AAAATATTATACCTATAATTTTATAAATA
Found at i:14082517 original size:26 final size:26
Alignment explanation
Indices: 14082479--14082548 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
14082469 AATATTCAAC
*
14082479 AATTCAATAATATTATTTTTATGAATT
1 AATTAAATAATATTATTTTTATGAA-T
* *
14082506 AA-TAAATAATATTAATTTTATTAAT
1 AATTAAATAATATTATTTTTATGAAT
*
14082531 AATTTAATATATATTATT
1 AATTAAATA-ATATTATT
14082549 AAAATAAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.08
26 24 0.67
27 9 0.25
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (26 bp):
AATTAAATAATATTATTTTTATGAAT
Found at i:14082545 original size:18 final size:18
Alignment explanation
Indices: 14082510--14082613 Score: 52
Period size: 18 Copynumber: 5.6 Consensus size: 18
14082500 TGAATTAATA
*
14082510 AATAATATTAATTTTATT
1 AATAATATTAATTATATT
14082528 AATAAT-TTAATATATATT
1 AATAATATTAAT-TATATT
* * * *
14082546 ATTAAAATAAAATTATAAT
1 AATAATAT-TAATTATATT
* *
14082565 ATTATATATTATAATTATAAAT
1 AATA-ATA-T-TAATTAT-ATT
*
14082587 AATAAAATT-ATTATATT
1 AATAATATTAATTATATT
*
14082604 -ATATTATTAA
1 AATAATATTAA
14082614 AATTATAAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
16 6 0.09
17 8 0.12
18 20 0.30
19 11 0.16
20 6 0.09
21 10 0.15
22 6 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AATAATATTAATTATATT
Found at i:14082568 original size:8 final size:8
Alignment explanation
Indices: 14082552--14082621 Score: 53
Period size: 8 Copynumber: 9.5 Consensus size: 8
14082542 TATTATTAAA
*
14082552 ATAAAATT
1 ATAATATT
14082560 ATAATATT
1 ATAATATT
14082568 AT-ATATT
1 ATAATATT
14082575 AT-A-ATT
1 ATAATATT
*
14082581 ATAA-ATA
1 ATAATATT
*
14082588 ATAAAATT
1 ATAATATT
*
14082596 ATTATATT
1 ATAATATT
*
14082604 ATATTATT
1 ATAATATT
14082612 A-AA-ATT
1 ATAATATT
14082618 ATAA
1 ATAA
14082622 ATAAATATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
6 9 0.18
7 18 0.35
8 24 0.47
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
ATAATATT
Found at i:14082572 original size:31 final size:30
Alignment explanation
Indices: 14082528--14082625 Score: 94
Period size: 31 Copynumber: 3.2 Consensus size: 30
14082518 TAATTTTATT
14082528 AATAAT-TTAATATATATTATTAAAATAA-A
1 AATAATATT-ATATATATTATTAAAATAATA
*
14082557 ATTATAATATTATATATTATAATTATAAATAATA
1 A--ATAATATTATATA-TATTATTA-AAATAATA
* *
14082591 AA-ATTATTATATTATATTATTAAAATTATA
1 AATAATATTATA-TATATTATTAAAATAATA
14082621 AATAA
1 AATAA
14082626 ATATAATTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 14
0.75 0.07 0.19
Matches are distributed among these distances:
29 1 0.02
30 9 0.16
31 26 0.46
32 12 0.21
33 6 0.11
34 2 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
AATAATATTATATATATTATTAAAATAATA
Found at i:14082584 original size:29 final size:29
Alignment explanation
Indices: 14082538--14082622 Score: 95
Period size: 29 Copynumber: 2.9 Consensus size: 29
14082528 AATAATTTAA
* *
14082538 TATATATTATTAA-AATAAAATTATAATAT
1 TATATATTA-TAATTATAAAATTATAAAAT
*
14082567 TATATATTATAATTAT-AAATAATAAAAT
1 TATATATTATAATTATAAAATTATAAAAT
14082595 TATTATATTAT-ATTATTAAAATTATAAA
1 TA-TATATTATAATTA-TAAAATTATAAA
14082623 TAAATATAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
28 19 0.40
29 20 0.42
30 9 0.19
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
TATATATTATAATTATAAAATTATAAAAT
Found at i:14082621 original size:37 final size:36
Alignment explanation
Indices: 14082543--14082647 Score: 126
Period size: 36 Copynumber: 2.9 Consensus size: 36
14082533 TTTAATATAT
* *
14082543 ATTATTAA-AATAAAATTATAATATTATATATTATA
1 ATTATAAATAATAAAATTATAATATTATATATTAAA
*
14082578 ATTATAAATAATAAAATTATTATATTATATTATTAAA
1 ATTATAAATAATAAAATTATAATATTATA-TATTAAA
*
14082615 ATTATAAATAAATATAATT-TAATAATTA-ATATT
1 ATTATAAAT-AATAAAATTATAAT-ATTATATATT
14082648 TTTATTAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
35 7 0.11
36 23 0.38
37 19 0.31
38 12 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (36 bp):
ATTATAAATAATAAAATTATAATATTATATATTAAA
Found at i:14085543 original size:22 final size:23
Alignment explanation
Indices: 14085518--14085571 Score: 74
Period size: 25 Copynumber: 2.3 Consensus size: 23
14085508 CCTCGTAGAT
*
14085518 CTCGTAG-TGCACTCGAAAGTGC
1 CTCGTAGTTGCACTCGAAAATGC
14085540 CTCGTAGTATTGCACTCGAAAATGC
1 CTCGTAG--TTGCACTCGAAAATGC
14085565 CTCGTAG
1 CTCGTAG
14085572 GATTGCACCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 7 0.25
25 21 0.75
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (23 bp):
CTCGTAGTTGCACTCGAAAATGC
Found at i:14085557 original size:25 final size:25
Alignment explanation
Indices: 14085525--14085579 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
14085515 GATCTCGTAG
* *
14085525 TGCACTCGAAAGTGCCTCGTAGTAT
1 TGCACTCGAAAATGCCTCGTAGGAT
14085550 TGCACTCGAAAATGCCTCGTAGGAT
1 TGCACTCGAAAATGCCTCGTAGGAT
14085575 TGCAC
1 TGCAC
14085580 CATAGGTGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (25 bp):
TGCACTCGAAAATGCCTCGTAGGAT
Found at i:14087176 original size:24 final size:25
Alignment explanation
Indices: 14087149--14087202 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
14087139 TGCTTATATT
*
14087149 GCAC-CTATGGTGCTAATCTACGAG
1 GCACTCTATGGTGCAAATCTACGAG
* *
14087173 GCACTTTCTGGTGCAAATCTACGAG
1 GCACTCTATGGTGCAAATCTACGAG
14087198 GCACT
1 GCACT
14087203 TTAGAGTGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 4 0.15
25 22 0.85
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (25 bp):
GCACTCTATGGTGCAAATCTACGAG
Found at i:14087184 original size:25 final size:25
Alignment explanation
Indices: 14087156--14087204 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
14087146 ATTGCACCTA
*
14087156 TGGTGCTAATCTACGAGGCACTTTC
1 TGGTGCAAATCTACGAGGCACTTTC
14087181 TGGTGCAAATCTACGAGGCACTTT
1 TGGTGCAAATCTACGAGGCACTTT
14087205 AGAGTGCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (25 bp):
TGGTGCAAATCTACGAGGCACTTTC
Found at i:14087211 original size:25 final size:25
Alignment explanation
Indices: 14087157--14087213 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
14087147 TTGCACCTAT
* *
14087157 GGTGCTAATCTACGAGGCACTTTCT
1 GGTGCAAATCTACGAGGCACTTTCA
14087182 GGTGCAAATCTACGAGGCACTTT-A
1 GGTGCAAATCTACGAGGCACTTTCA
14087206 GAGTGCAA
1 G-GTGCAA
14087214 TTCCACGGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 1 0.03
25 28 0.97
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (25 bp):
GGTGCAAATCTACGAGGCACTTTCA
Found at i:14089952 original size:31 final size:31
Alignment explanation
Indices: 14089878--14089963 Score: 83
Period size: 31 Copynumber: 2.9 Consensus size: 31
14089868 TTGGACTGGT
* *
14089878 GACTAAAAA-GTAAATTTCG--AAAGTATAGG
1 GACTAAAAATGTAAATTT-GTAAAAGTTTAAG
* *
14089907 GA-TCAAAGTGTAAATTTGTAAAAGTTTAAG
1 GACTAAAAATGTAAATTTGTAAAAGTTTAAG
14089937 GACTAAAAATGTAAATTT-TCAAAAGTT
1 GACTAAAAATGTAAATTTGT-AAAAGTT
14089964 ATATTTTGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
28 5 0.11
29 10 0.22
30 11 0.24
31 20 0.43
ACGTcount: A:0.47, C:0.06, G:0.17, T:0.30
Consensus pattern (31 bp):
GACTAAAAATGTAAATTTGTAAAAGTTTAAG
Found at i:14092029 original size:25 final size:25
Alignment explanation
Indices: 14092001--14092083 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
14091991 TGCACCTATG
14092001 GTGCAAATCTTCGAGGCACTTTCGA
1 GTGCAAATCTTCGAGGCACTTTCGA
* *
14092026 GTGCAATTCTAT-GAGGCACTTTTGA
1 GTGCAAATCT-TCGAGGCACTTTCGA
* * * *
14092051 GTGCAATTATACAAGGCACTTTCGA
1 GTGCAAATCTTCGAGGCACTTTCGA
*
14092076 GTGGAAAT
1 GTGCAAAT
14092084 ATATCTACGA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 47 0.98
26 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (25 bp):
GTGCAAATCTTCGAGGCACTTTCGA
Found at i:14092086 original size:25 final size:25
Alignment explanation
Indices: 14092014--14092078 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
14092004 CAAATCTTCG
* **
14092014 AGGCACTTTCGAGTGCAATTCTATG
1 AGGCACTTTCGAGTGCAATTATACA
*
14092039 AGGCACTTTTGAGTGCAATTATACA
1 AGGCACTTTCGAGTGCAATTATACA
14092064 AGGCACTTTCGAGTG
1 AGGCACTTTCGAGTG
14092079 GAAATATATC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (25 bp):
AGGCACTTTCGAGTGCAATTATACA
Found at i:14092311 original size:10 final size:10
Alignment explanation
Indices: 14092284--14092317 Score: 52
Period size: 9 Copynumber: 3.4 Consensus size: 10
14092274 TAATTTTATG
14092284 TTATAAAATT
1 TTATAAAATT
14092294 TT-TAAAATT
1 TTATAAAATT
14092303 TTATAAAATT
1 TTATAAAATT
14092313 GTTAT
1 -TTAT
14092318 TTTTAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.41
10 9 0.41
11 4 0.18
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (10 bp):
TTATAAAATT
Found at i:14092344 original size:25 final size:25
Alignment explanation
Indices: 14092291--14092345 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
14092281 ATGTTATAAA
* *
14092291 ATTTTTAAAATTTTATAAAATTGTT
1 ATTTTTAAAATTTTATAAAACTGTG
*
14092316 ATTTTTAATAATTTTAT-ATACTGTG
1 ATTTTTAA-AATTTTATAAAACTGTG
14092341 ATTTT
1 ATTTT
14092346 ATAAGACAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (25 bp):
ATTTTTAAAATTTTATAAAACTGTG
Found at i:14092947 original size:63 final size:63
Alignment explanation
Indices: 14092869--14092992 Score: 212
Period size: 63 Copynumber: 2.0 Consensus size: 63
14092859 ATGTGTGTAG
* * * *
14092869 TATTTATATTAATTACAATATAATTTGCATGTTAGAATGTAATAGATTAATATAATAAAGTAA
1 TATTCATATTAATTACAATAGAATTTGCATGTTAGAATATAATAAATTAATATAATAAAGTAA
14092932 TATTCATATTAATTACAATAGAATTTGCATGTTAGAATATAATAAATTAATATAATAAAGT
1 TATTCATATTAATTACAATAGAATTTGCATGTTAGAATATAATAAATTAATATAATAAAGT
14092993 TTACCATGTT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.40
Consensus pattern (63 bp):
TATTCATATTAATTACAATAGAATTTGCATGTTAGAATATAATAAATTAATATAATAAAGTAA
Found at i:14093607 original size:13 final size:14
Alignment explanation
Indices: 14093582--14093610 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14093572 AACAAAGCCA
14093582 AATAAATATTAAAT
1 AATAAATATTAAAT
14093596 AATAAA-ATTAAAT
1 AATAAATATTAAAT
14093609 AA
1 AA
14093611 AATAATAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AATAAATATTAAAT
Found at i:14095254 original size:36 final size:35
Alignment explanation
Indices: 14095154--14095312 Score: 194
Period size: 35 Copynumber: 4.5 Consensus size: 35
14095144 AATTTTATGT
* *
14095154 TATACGTTTTCAAAATTATCTTAAAAATTATATAC
1 TATACGTTTTCAAAATTATTTTAAAAACTATATAC
* * *
14095189 TATATGTTTTCAAAATCATTTTAAAAACTATATAG
1 TATACGTTTTCAAAATTATTTTAAAAACTATATAC
* * *
14095224 TATATGTTTTCAAAACTATTTTTAAAAACTATATAT
1 TATACGTTTTCAAAATTA-TTTTAAAAACTATATAC
* * *
14095260 TATAAGTTTTTAAAATTACTTT-AAAACTATATAC
1 TATACGTTTTCAAAATTATTTTAAAAACTATATAC
*
14095294 TATACGTTTTAAAAATTAT
1 TATACGTTTTCAAAATTAT
14095313 ATTTTATACG
Statistics
Matches: 107, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
34 27 0.25
35 49 0.46
36 31 0.29
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.45
Consensus pattern (35 bp):
TATACGTTTTCAAAATTATTTTAAAAACTATATAC
Found at i:14095313 original size:23 final size:23
Alignment explanation
Indices: 14095282--14095331 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
14095272 AAATTACTTT
14095282 AAAACTATATACTATACGTTTTA
1 AAAACTATATACTATACGTTTTA
* ** *
14095305 AAAATTATATTTTATACGTTTTC
1 AAAACTATATACTATACGTTTTA
14095328 AAAA
1 AAAA
14095332 GTATTTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.42
Consensus pattern (23 bp):
AAAACTATATACTATACGTTTTA
Found at i:14095340 original size:23 final size:23
Alignment explanation
Indices: 14095294--14095341 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
14095284 AACTATATAC
*
14095294 TATACGTTTTAAAAATTATATTT
1 TATACGTTTTAAAAAGTATATTT
* *
14095317 TATACGTTTTCAAAAGTATTTTT
1 TATACGTTTTAAAAAGTATATTT
14095340 TA
1 TA
14095342 AAAATTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (23 bp):
TATACGTTTTAAAAAGTATATTT
Found at i:14098202 original size:18 final size:17
Alignment explanation
Indices: 14098179--14098212 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
14098169 TCAATTTACT
14098179 ATTTATTTATTTTCTTTA
1 ATTTATTT-TTTTCTTTA
14098197 ATTTATTTTTTTCTTT
1 ATTTATTTTTTTCTTT
14098213 TTTTTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTATTTTTTTCTTTA
Found at i:14100986 original size:37 final size:37
Alignment explanation
Indices: 14100931--14101065 Score: 191
Period size: 37 Copynumber: 3.6 Consensus size: 37
14100921 GTCCTACTAA
*
14100931 GATTCAAACTCCTAAAAATAGGATAGAATTTTGCTAG
1 GATTCAAACTCCTTAAAATAGGATAGAATTTTGCTAG
14100968 GATTCAAACTCCTTAAAATAGGATAGAATTTTGCTAG
1 GATTCAAACTCCTTAAAATAGGATAGAATTTTGCTAG
* * * * *
14101005 GATTCAAACTCCTTAAAATATGATAGAGTTCTACTAT
1 GATTCAAACTCCTTAAAATAGGATAGAATTTTGCTAG
*
14101042 GATTTAAACTCC-TAAAGATAGGAT
1 GATTCAAACTCCTTAAA-ATAGGAT
14101066 CCACAAGCAC
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
36 4 0.04
37 85 0.96
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (37 bp):
GATTCAAACTCCTTAAAATAGGATAGAATTTTGCTAG
Found at i:14101621 original size:2 final size:2
Alignment explanation
Indices: 14101608--14101641 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
14101598 TTTTAAATAC
*
14101608 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14101642 CTTTTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14101867 original size:18 final size:19
Alignment explanation
Indices: 14101844--14101893 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
14101834 GGTTTTGGTT
14101844 TTTTTATATTATATTA-TA
1 TTTTTATATTATATTATTA
14101862 TTTTTATA-TACTATTATTA
1 TTTTTATATTA-TATTATTA
*
14101881 TTGTTATGATTAT
1 TTTTTAT-ATTAT
14101894 TTTTCTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 2 0.07
18 13 0.48
19 8 0.30
20 2 0.07
21 2 0.07
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (19 bp):
TTTTTATATTATATTATTA
Found at i:14101975 original size:8 final size:8
Alignment explanation
Indices: 14101931--14102016 Score: 50
Period size: 8 Copynumber: 10.5 Consensus size: 8
14101921 ATATATATAA
*
14101931 TTTTCATT
1 TTTTTATT
*
14101939 TATTTATT
1 TTTTTATT
*
14101947 TATTTATT
1 TTTTTATT
*
14101955 TATTTT-TC
1 T-TTTTATT
*
14101963 CTTTTATT
1 TTTTTATT
14101971 TTTTTACTT
1 TTTTTA-TT
14101980 ATTTTTA-T
1 -TTTTTATT
* *
14101988 TCTTCATT
1 TTTTTATT
*
14101996 TTTTCATT
1 TTTTTATT
14102004 TTTTTCATT
1 TTTTT-ATT
14102013 TTTT
1 TTTT
14102017 CCTTCTGACA
Statistics
Matches: 61, Mismatches: 11, Indels: 11
0.73 0.13 0.13
Matches are distributed among these distances:
7 8 0.13
8 35 0.57
9 12 0.20
10 6 0.10
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTATT
Found at i:14103107 original size:21 final size:21
Alignment explanation
Indices: 14103083--14103122 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14103073 ACCTTACTAA
*
14103083 CTCTTTTCATTTTTTTTCCCT
1 CTCTTTTCATTTTATTTCCCT
*
14103104 CTCTTTTTATTTTATTTCC
1 CTCTTTTCATTTTATTTCC
14103123 ATCATCTGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.25, G:0.00, T:0.68
Consensus pattern (21 bp):
CTCTTTTCATTTTATTTCCCT
Found at i:14106612 original size:30 final size:28
Alignment explanation
Indices: 14106561--14106617 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 28
14106551 AATCAATAAC
* *
14106561 AAAAAAGAAAAGAAGCAAAAAAACAAAG
1 AAAAAAGAAAACAAGAAAAAAAACAAAG
*
14106589 AAAAAAGAGAAACAAGAACAAAAATCAAA
1 AAAAAAGA-AAACAAGAA-AAAAAACAAA
14106618 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 8 0.33
29 7 0.29
30 9 0.38
ACGTcount: A:0.77, C:0.09, G:0.12, T:0.02
Consensus pattern (28 bp):
AAAAAAGAAAACAAGAAAAAAAACAAAG
Found at i:14107476 original size:22 final size:22
Alignment explanation
Indices: 14107402--14107478 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
14107392 GCTACCCCAT
*
14107402 CAAACCGTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
*
14107424 CAAACCTATGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
*
14107446 CAAACCTTTGAGCATCAAATGT
1 CAAACCTTTGAGCATCAAATGC
14107468 CAAACCTTTGA
1 CAAACCTTTGA
14107479 CCAAACATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:14108392 original size:106 final size:106
Alignment explanation
Indices: 14108204--14109352 Score: 1684
Period size: 106 Copynumber: 10.9 Consensus size: 106
14108194 TCGAGAGTAG
* *
14108204 AGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCATAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
14108269 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * *
14108310 AGTTCAACTTCACAACGAAGGGACCACTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
14108375 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
14108416 AGTTCAACTTCACGACGAAGAGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
14108481 TTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
14108522 AGTTCAACTTCACGACGAAGGGAACGCTGGTTGCCAATAAACAACTTCCCAATTTCAAAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
14108587 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
14108628 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * * * *
14108693 TTCAACTTCACAGCGAATGATATTGGACTCAAGATAACACG
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
14108734 AGTTCAACTTCACGACGAAGGGACCGCTTGTTATCAATAAACAACTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
14108799 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * * *
14108840 AGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAACAAATAACTTCTCAATTTTAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
14108905 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
14108946 AGTTCAACTTCACGACGAAGGGATCACTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
14109011 TTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
14109052 AGTTCAACTTCACGTCGAAGGGACCGCTGGTTGTCAATAAACAACTTTCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * * *
14109117 TTCAACTTCTCAACGAAGGATCTTGGAC-CCAAGACAACCCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCC-AGACAACGCA
* * * * * * *
14109158 AGCTCAACTTCACGACGAAGGGGCGGCTGATTGTCAA-CAA-AA-TT-TC-A-TTCAGAGTCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
14109217 TTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * * * ** *
14109258 AGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCCGGTTCCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
14109323 TTCAACTTCAC-GACGGAGGATATTGGACTC
66 TTCAACTTCACAG-CGAAGGATATTGGACTC
14109353 AGAACAATGC
Statistics
Matches: 940, Mismatches: 94, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
100 78 0.08
101 4 0.00
102 3 0.00
103 4 0.00
104 3 0.00
105 4 0.00
106 844 0.90
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
Found at i:14110136 original size:37 final size:37
Alignment explanation
Indices: 14110083--14110187 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
14110073 CCTTTTCATC
*
14110083 CTACTAGGATTCAAACTCCTAAAAATAGGATATAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * * * *
14110120 TTGCTAGGATTCAAACTCATTAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
14110157 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
14110188 CCACAAGCAC
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:14110738 original size:21 final size:21
Alignment explanation
Indices: 14110712--14110777 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
14110702 ATTCATTTGG
*
14110712 TTATTTTTAATACTATATTTA-
1 TTATTTTTAATA-TATATATAC
*
14110733 TTATTTATATATATATATATAC
1 TTATTTTTA-ATATATATATAC
* *
14110755 TT-TTTTTAAAATAT-TTTAC
1 TTATTTTTAATATATATATAC
14110774 TTAT
1 TTAT
14110778 AAGCGTATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
19 6 0.16
20 6 0.16
21 20 0.54
22 5 0.14
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.61
Consensus pattern (21 bp):
TTATTTTTAATATATATATAC
Found at i:14110953 original size:30 final size:32
Alignment explanation
Indices: 14110897--14110975 Score: 90
Period size: 30 Copynumber: 2.5 Consensus size: 32
14110887 GCCAATTATC
* *
14110897 ATTATATGTATACTTTTATATTTGGTTTATATAT
1 ATTATAT-TATA-TTTTTTTTTTGGTTTATATAT
* *
14110931 A-TATATT-TATTTTTTTTTTGGTTTTTTTAT
1 ATTATATTATATTTTTTTTTTGGTTTATATAT
14110961 ATTATATTATATTTT
1 ATTATATTATATTTT
14110976 CATATTACTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 18 0.46
31 8 0.21
32 7 0.18
33 5 0.13
34 1 0.03
ACGTcount: A:0.25, C:0.01, G:0.06, T:0.67
Consensus pattern (32 bp):
ATTATATTATATTTTTTTTTTGGTTTATATAT
Found at i:14110980 original size:18 final size:19
Alignment explanation
Indices: 14110954--14110989 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14110944 TTTTTTGGTT
*
14110954 TTTTTATATTA-TATTATA
1 TTTTCATATTACTATTATA
14110972 TTTTCATATTACTATTAT
1 TTTTCATATTACTATTAT
14110990 TGTTATGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTCATATTACTATTATA
Found at i:14113013 original size:31 final size:29
Alignment explanation
Indices: 14112947--14113027 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 29
14112937 AATTTTGACC
*
14112947 AAAAAAAAAT-ACTTTAGACAATTATTTT
1 AAAAAAAAATAACTTTAGATAATTATTTT
* * *
14112975 GATAAAAAATTAACTTTAGATATTTATTTT
1 -AAAAAAAAATAACTTTAGATAATTATTTT
*
14113005 AACAAAAAAAAATACTTTAGATA
1 AA-AAAAAAATA-ACTTTAGATA
14113028 CTTAAATAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
29 9 0.21
30 23 0.55
31 10 0.24
ACGTcount: A:0.53, C:0.06, G:0.05, T:0.36
Consensus pattern (29 bp):
AAAAAAAAATAACTTTAGATAATTATTTT
Found at i:14113274 original size:29 final size:29
Alignment explanation
Indices: 14113234--14113289 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
14113224 GGGACTACTA
*
14113234 AATAATTCATTCCTTTCTTTTCTTCTCAT
1 AATAATTCATTCCTTTCTCTTCTTCTCAT
* *
14113263 AATATTTCATTCGTTTCTCTTCTTCTC
1 AATAATTCATTCCTTTCTCTTCTTCTC
14113290 CATTCTTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.18, C:0.25, G:0.02, T:0.55
Consensus pattern (29 bp):
AATAATTCATTCCTTTCTCTTCTTCTCAT
Found at i:14113868 original size:29 final size:29
Alignment explanation
Indices: 14113835--14113913 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 29
14113825 AAAGAGAATA
14113835 ATTGATATTATTTAAAAGAATTAACTTCT
1 ATTGATATTATTTAAAAGAATTAACTTCT
*
14113864 ATTGA-AGTTGA--AAAATAGAATTAACTTCT
1 ATTGATA-TT-ATTTAAA-AGAATTAACTTCT
* *
14113893 TTTGATATTATTTAAGAGAAT
1 ATTGATATTATTTAAAAGAAT
14113914 AATATGTGGA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
28 5 0.12
29 31 0.77
30 4 0.10
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (29 bp):
ATTGATATTATTTAAAAGAATTAACTTCT
Found at i:14116484 original size:22 final size:22
Alignment explanation
Indices: 14116436--14116489 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
14116426 TTCAGCTGTT
* *
14116436 ATAACTCCTGAAATTATATCAT
1 ATAACTCCTGAAATTAAATCAA
* * *
14116458 GTAACCCCTGGAATTAAATCAA
1 ATAACTCCTGAAATTAAATCAA
14116480 ATAACTCCTG
1 ATAACTCCTG
14116490 TAACTCCTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (22 bp):
ATAACTCCTGAAATTAAATCAA
Found at i:14123088 original size:21 final size:19
Alignment explanation
Indices: 14123052--14123090 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
14123042 AAAACTAAAA
*
14123052 TTGGTTTTTTCGGTTCGGT
1 TTGGTTTTTTCAGTTCGGT
14123071 TTGGTTTTTTAACAGTTCGG
1 TTGGTTTTTT--CAGTTCGG
14123091 GTTTTTCGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
21 7 0.41
ACGTcount: A:0.08, C:0.10, G:0.28, T:0.54
Consensus pattern (19 bp):
TTGGTTTTTTCAGTTCGGT
Found at i:14125374 original size:24 final size:23
Alignment explanation
Indices: 14125338--14125383 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
14125328 CAAGTAACAA
* *
14125338 GAAAACGATAATAAGTAAACAAAT
1 GAAAACGAAAATAAAT-AACAAAT
*
14125362 GAAAAGGAAAATAAATAACAAA
1 GAAAACGAAAATAAATAACAAA
14125384 AAATAAACGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.67, C:0.07, G:0.13, T:0.13
Consensus pattern (23 bp):
GAAAACGAAAATAAATAACAAAT
Found at i:14127000 original size:2 final size:2
Alignment explanation
Indices: 14126993--14127066 Score: 97
Period size: 2 Copynumber: 39.5 Consensus size: 2
14126983 ACAAACATAA
14126993 AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT -T A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14127032 AT AT AT AT AT AT A- AGT AT AT AT AT -T AT AT A- AT AT A
1 AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT A
14127067 GTTAGCAAAT
Statistics
Matches: 65, Mismatches: 0, Indels: 14
0.82 0.00 0.18
Matches are distributed among these distances:
1 6 0.09
2 58 0.89
3 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (2 bp):
AT
Found at i:14127966 original size:106 final size:109
Alignment explanation
Indices: 14127835--14128087 Score: 350
Period size: 111 Copynumber: 2.3 Consensus size: 109
14127825 AGTACTGTTC
* * * *
14127835 TGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGT-T-TTGGAACAG-GGAAATTGTTTGTTG
1 TGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGTCTAATGAAACAGAAGAAATTGTTTGTTG
14127897 ACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
66 ACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
* * * * *
14127941 TGAGTCTAATATCCTTCGCTATGAAGTTGAAATTGACTCTGAATGAAACTGAAGAAGTTGTTTGT
1 TGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTG-GTCT-AATGAAACAGAAGAAATTGTTTGT
* *
14128006 TGACAGTCATCCGCCCCTTCGCTGTGAAGTTGAGTTTGTGCTGTCT
64 TGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
* *
14128052 TAAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
1 TGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGG
14128088 CTCTGAAACT
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
106 32 0.25
107 1 0.01
108 1 0.01
110 6 0.05
111 86 0.68
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (109 bp):
TGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGTCTAATGAAACAGAAGAAATTGTTTGTTG
ACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
Found at i:14128026 original size:111 final size:111
Alignment explanation
Indices: 14127887--14128094 Score: 353
Period size: 111 Copynumber: 1.9 Consensus size: 111
14127877 AACAGGGAAA
* *
14127887 TTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCTAATA
1 TTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTAAGTCCAATA
14127952 TCCTTCGCTATGAAGTTGAAATTGACTCTGAATGAAACTGAAGAAG
66 TCCTTCGCTATGAAGTTGAAATTGACTCTGAATGAAACTGAAGAAG
* *
14127998 TTGTTTGTTGACAGTCATCCGCCCCTTCGCTGTGAAGTTGAGTTTGTGCTGTCTTAAGTCCAATA
1 TTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTAAGTCCAATA
* * *
14128063 TCCTTCGTTGTGAAGTTGAAATTGGCTCTGAA
66 TCCTTCGCTATGAAGTTGAAATTGACTCTGAA
14128095 ACTGGGAAGC
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
111 90 1.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (111 bp):
TTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTAAGTCCAATA
TCCTTCGCTATGAAGTTGAAATTGACTCTGAATGAAACTGAAGAAG
Found at i:14129252 original size:8 final size:7
Alignment explanation
Indices: 14129230--14129284 Score: 74
Period size: 7 Copynumber: 7.4 Consensus size: 7
14129220 CTTATTTTTC
14129230 TTTTCTT
1 TTTTCTT
14129237 TTTTCTT
1 TTTTCTT
14129244 TTGTTCTT
1 TT-TTCTT
14129252 TTTCTCTT
1 TTT-TCTT
14129260 TTTTCTCT
1 TTTTCT-T
14129268 TTTTCTT
1 TTTTCTT
*
14129275 TTTCCTT
1 TTTTCTT
14129282 TTT
1 TTT
14129285 CAATTTAGGA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
7 23 0.52
8 21 0.48
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (7 bp):
TTTTCTT
Found at i:14129252 original size:15 final size:14
Alignment explanation
Indices: 14129230--14129284 Score: 74
Period size: 15 Copynumber: 3.7 Consensus size: 14
14129220 CTTATTTTTC
14129230 TTTTCTTTTTTCTT
1 TTTTCTTTTTTCTT
14129244 TTGTTCTTTTTCTCTT
1 TT-TTCTTTTT-TCTT
14129260 TTTTCTCTTTTTCTT
1 TTTTCT-TTTTTCTT
*
14129275 TTTCCTTTTT
1 TTTTCTTTTT
14129285 CAATTTAGGA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
14 6 0.16
15 21 0.57
16 10 0.27
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (14 bp):
TTTTCTTTTTTCTT
Found at i:14129263 original size:23 final size:23
Alignment explanation
Indices: 14129233--14129284 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
14129223 ATTTTTCTTT
14129233 TCTTTTTTCT-TTTGTTCTTTTTC
1 TCTTTTTTCTCTTT-TTCTTTTTC
14129256 TCTTTTTTCTCTTTTTCTTTTTC
1 TCTTTTTTCTCTTTTTCTTTTTC
14129279 -CTTTTT
1 TCTTTTT
14129285 CAATTTAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 6 0.21
23 19 0.68
24 3 0.11
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (23 bp):
TCTTTTTTCTCTTTTTCTTTTTC
Found at i:14134324 original size:21 final size:21
Alignment explanation
Indices: 14134298--14134337 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14134288 CAGAACCCCA
*
14134298 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
14134319 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
14134338 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:14138229 original size:22 final size:21
Alignment explanation
Indices: 14138187--14138226 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14138177 GAGTTTGTTT
*
14138187 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
14138208 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
14138227 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:14146133 original size:24 final size:24
Alignment explanation
Indices: 14146092--14146137 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14146082 ATACGAATGT
14146092 AAAAACATAGAAAATATAAAATAA
1 AAAAACATAGAAAATATAAAATAA
*
14146116 AAAAACAT-GAAATGTATAAAAT
1 AAAAACATAGAAA-ATATAAAAT
14146138 GTAAAGTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.70, C:0.04, G:0.07, T:0.20
Consensus pattern (24 bp):
AAAAACATAGAAAATATAAAATAA
Found at i:14152581 original size:47 final size:47
Alignment explanation
Indices: 14152509--14152928 Score: 571
Period size: 47 Copynumber: 8.9 Consensus size: 47
14152499 CTCTACCTTT
*
14152509 TTTCATGCCTTAATGCATCCGTTCATGCATTTTTATTTATGGCATCC
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTTATTTATGGCATCC
* * *
14152556 TTTCACGCCTTAATGCATTCATTCATTCATTTTT-TTTAGTTTTGGCATCC
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTTATTTA----TGGCATCC
*
14152606 TTTCATGCCTTAATGCATCCGTTCATGCATTTTTAGTTT-TGGCATCC
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTTA-TTTATGGCATCC
* * *
14152653 TTTCATGCCTTAATGCACCCGTTCATGAATTTTTAGTTT-TGGCATCC
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTTA-TTTATGGCATCC
14152700 TTTCATGCCTTAATGCAT-CATTTCATGCATTTTTATTTATGGCATCC
1 TTTCATGCCTTAATGCATCCA-TTCATGCATTTTTATTTATGGCATCC
14152747 TTTCATGCCTTAATGCAT-CATTTCATGCATTTTTATTTATGGCATCC
1 TTTCATGCCTTAATGCATCCA-TTCATGCATTTTTATTTATGGCATCC
* * *
14152794 TTTCATGCCTTAATGCATCCATTCATGGATTTTTATTTATGTCATCA
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTTATTTATGGCATCC
* * *** *
14152841 TTTCATTCATTAATGCATATTTTCATGCATTTTTATTTATGGCATCA
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTTATTTATGGCATCC
*
14152888 TTTCATGCCTTAATGCATCCTTTCATGCATTTTTATTTATG
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTTATTTATG
14152929 AATTCGGTTT
Statistics
Matches: 337, Mismatches: 27, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
46 8 0.02
47 286 0.85
48 2 0.01
50 38 0.11
52 3 0.01
ACGTcount: A:0.20, C:0.21, G:0.11, T:0.47
Consensus pattern (47 bp):
TTTCATGCCTTAATGCATCCATTCATGCATTTTTATTTATGGCATCC
Found at i:14152752 original size:27 final size:27
Alignment explanation
Indices: 14152714--14152801 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 27
14152704 ATGCCTTAAT
14152714 GCATCATTTCATGCATTTTTATTTATG
1 GCATCATTTCATGCATTTTTATTTATG
* *
14152741 GCATCCTTTCATGC---CTTA---AT-
1 GCATCATTTCATGCATTTTTATTTATG
14152761 GCATCATTTCATGCATTTTTATTTATG
1 GCATCATTTCATGCATTTTTATTTATG
*
14152788 GCATCCTTTCATGC
1 GCATCATTTCATGC
14152802 CTTAATGCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
20 13 0.27
21 2 0.04
23 3 0.06
24 3 0.06
26 2 0.04
27 26 0.53
ACGTcount: A:0.20, C:0.22, G:0.11, T:0.47
Consensus pattern (27 bp):
GCATCATTTCATGCATTTTTATTTATG
Found at i:14152813 original size:20 final size:20
Alignment explanation
Indices: 14152694--14152820 Score: 83
Period size: 20 Copynumber: 5.7 Consensus size: 20
14152684 TTTAGTTTTG
14152694 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
14152714 GCATCATTTCATGCATTTTTATTTAT
1 GCATCCTTTCATGC---CTTA---AT
14152740 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* *
14152761 GCATCATTTCATGCATTTTTATTTAT
1 GCATCCTTTCATGC---CTTA---AT
14152787 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
14152808 GCATCCATTCATG
1 GCATCCTTTCATG
14152821 GATTTTTATT
Statistics
Matches: 84, Mismatches: 9, Indels: 28
0.69 0.07 0.23
Matches are distributed among these distances:
20 38 0.45
21 4 0.05
23 6 0.07
24 6 0.07
26 4 0.05
27 26 0.31
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Done.