Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20687664
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 70 of 91
Found at i:15714015 original size:18 final size:18
Alignment explanation
Indices: 15713934--15714016 Score: 84
Period size: 18 Copynumber: 4.8 Consensus size: 18
15713924 AACGGCCAAT
* *
15713934 GGTCAATGGGTCGGATCG
1 GGTCAACGGGTCGGGTCG
* *
15713952 GGTCAACTGGTCAGGTCG
1 GGTCAACGGGTCGGGTCG
*
15713970 GGTCAAAC---T-GAGTCG
1 GGTC-AACGGGTCGGGTCG
15713985 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
15714003 GGTCAACGGGTCGG
1 GGTCAACGGGTCGG
15714017 TTGACTTTCA
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
14 3 0.06
15 8 0.15
16 1 0.02
17 1 0.02
18 37 0.70
19 3 0.06
ACGTcount: A:0.17, C:0.20, G:0.43, T:0.19
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:15716117 original size:48 final size:48
Alignment explanation
Indices: 15716046--15716141 Score: 140
Period size: 48 Copynumber: 2.0 Consensus size: 48
15716036 AAAATAAAAG
* *
15716046 CATAATCTAGGTCAAGTATCATATCAA-AATTCAGGTCAAGTATCAGAT
1 CATAATCTAGGTCAAATATCATAT-AAGAATCCAGGTCAAGTATCAGAT
* *
15716094 CATAATCTATGTCAAATATCATATAAGAATCCATGTCAAGTATCAGAT
1 CATAATCTAGGTCAAATATCATATAAGAATCCAGGTCAAGTATCAGAT
15716142 TAGAATTCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 2 0.05
48 41 0.95
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (48 bp):
CATAATCTAGGTCAAATATCATATAAGAATCCAGGTCAAGTATCAGAT
Found at i:15716146 original size:24 final size:24
Alignment explanation
Indices: 15716056--15716147 Score: 94
Period size: 24 Copynumber: 3.8 Consensus size: 24
15716046 CATAATCTAG
* * * *
15716056 GTCAAGTATCATATCAAAATTCAG
1 GTCAAGTATCAGATCAGAATCCAT
* *
15716080 GTCAAGTATCAGATCATAATCTAT
1 GTCAAGTATCAGATCAGAATCCAT
* * *
15716104 GTCAAATATCATATAAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAT
*
15716128 GTCAAGTATCAGATTAGAAT
1 GTCAAGTATCAGATCAGAAT
15716148 TCAAATCTGA
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.30
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:15720490 original size:24 final size:24
Alignment explanation
Indices: 15720463--15720526 Score: 110
Period size: 24 Copynumber: 2.7 Consensus size: 24
15720453 CAAAATTTTG
* *
15720463 GTCAAGTATCATATTAGAATCTAT
1 GTCAAGTATCATATCAGAATCCAT
15720487 GTCAAGTATCATATCAGAATCCAT
1 GTCAAGTATCATATCAGAATCCAT
15720511 GTCAAGTATCATATCA
1 GTCAAGTATCATATCA
15720527 TAATTCAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (24 bp):
GTCAAGTATCATATCAGAATCCAT
Found at i:15724732 original size:48 final size:48
Alignment explanation
Indices: 15724676--15724774 Score: 135
Period size: 48 Copynumber: 2.1 Consensus size: 48
15724666 ATCAAAACAT
* *
15724676 AATCCAGGTCATGTATAAAATCAGAATCCAAGTCAAGTATTAGATTAG
1 AATCCAGGTCAAGTATAAAATCAGAATCCAAGTCAAGTATCAGATTAG
* * * * *
15724724 AATCCAGGTCAAGTATCAGATCAGAATCTAGGTCAAGTATCATATTAG
1 AATCCAGGTCAAGTATAAAATCAGAATCCAAGTCAAGTATCAGATTAG
15724772 AAT
1 AAT
15724775 TCAAATATGA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (48 bp):
AATCCAGGTCAAGTATAAAATCAGAATCCAAGTCAAGTATCAGATTAG
Found at i:15724764 original size:24 final size:24
Alignment explanation
Indices: 15724676--15724774 Score: 117
Period size: 24 Copynumber: 4.1 Consensus size: 24
15724666 ATCAAAACAT
* * *
15724676 AATCCAGGTCATGTATAAAATCAG
1 AATCCAGGTCAAGTATCAGATCAG
* * *
15724700 AATCCAAGTCAAGTATTAGATTAG
1 AATCCAGGTCAAGTATCAGATCAG
15724724 AATCCAGGTCAAGTATCAGATCAG
1 AATCCAGGTCAAGTATCAGATCAG
* * *
15724748 AATCTAGGTCAAGTATCATATTAG
1 AATCCAGGTCAAGTATCAGATCAG
15724772 AAT
1 AAT
15724775 TCAAATATGA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCCAGGTCAAGTATCAGATCAG
Found at i:15725608 original size:12 final size:12
Alignment explanation
Indices: 15725591--15725620 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15725581 TAGGGCCATT
15725591 AGTTTTACATCA
1 AGTTTTACATCA
*
15725603 AGTTTTACATTA
1 AGTTTTACATCA
15725615 AGTTTT
1 AGTTTT
15725621 CTTTATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (12 bp):
AGTTTTACATCA
Found at i:15731542 original size:16 final size:16
Alignment explanation
Indices: 15731521--15731551 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15731511 ACATTGTAGT
15731521 GTGTATCGATACACTA
1 GTGTATCGATACACTA
*
15731537 GTGTATGGATACACT
1 GTGTATCGATACACT
15731552 CATATATGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (16 bp):
GTGTATCGATACACTA
Found at i:15731626 original size:21 final size:20
Alignment explanation
Indices: 15731600--15731690 Score: 100
Period size: 21 Copynumber: 4.7 Consensus size: 20
15731590 AGTAGCCATA
15731600 GGTGTATGGATACACCTGCAG
1 GGTGTATGGATACA-CTGCAG
15731621 GGTGTATGGATACACTTGCAG
1 GGTGTATGGATACAC-TGCAG
**
15731642 GGTGTATCAATACAC--CA-
1 GGTGTATGGATACACTGCAG
**
15731659 -GTGTATGGATACACTATAG
1 GGTGTATGGATACACTGCAG
15731678 GGTGTATGGATAC
1 GGTGTATGGATAC
15731691 CCTTTGACAC
Statistics
Matches: 60, Mismatches: 5, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
16 12 0.20
18 3 0.05
20 13 0.22
21 32 0.53
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (20 bp):
GGTGTATGGATACACTGCAG
Found at i:15742104 original size:28 final size:28
Alignment explanation
Indices: 15742058--15742118 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
15742048 CATATTTTAA
15742058 AAAAAATCTTGAAAATAAAAGAAAA-ATG
1 AAAAAATCTTGAAAATAAAAGAAAAGA-G
*
15742086 AAAAAA-CTTGAAAAGTAAAATAAAAGAG
1 AAAAAATCTTGAAAA-TAAAAGAAAAGAG
15742114 AAAAA
1 AAAAA
15742119 CTTTAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 8 0.27
28 21 0.70
29 1 0.03
ACGTcount: A:0.70, C:0.03, G:0.11, T:0.15
Consensus pattern (28 bp):
AAAAAATCTTGAAAATAAAAGAAAAGAG
Found at i:15750036 original size:54 final size:53
Alignment explanation
Indices: 15749951--15750214 Score: 339
Period size: 54 Copynumber: 4.9 Consensus size: 53
15749941 CTATGTGTAC
* * *
15749951 TTTAGGCACTACGTGTGCAACCCACAGAATTCATCATATGTTGATAAACAACCG
1 TTTAGGCACTATGTGTGCAACCTAC-GAATTCATCATATGTTGATGAACAACCG
* * * * *
15750005 TTTAGGCACTATGTGTACAACCTATGTAATTCATCATTTATTGATTAACAACCG
1 TTTAGGCACTATGTGTGCAACCTACG-AATTCATCATATGTTGATGAACAACCG
*
15750059 TTTAGGCACTATGTGTGCAACCTACGGAATCCATCATATGTTGATGAACAACCG
1 TTTAGGCACTATGTGTGCAACCTAC-GAATTCATCATATGTTGATGAACAACCG
* *
15750113 TTTAGGCACTATGTGTGTAACCTACAAAATTCATCATATGTTGATGAACAACCG
1 TTTAGGCACTATGTGTGCAACCTAC-GAATTCATCATATGTTGATGAACAACCG
* * * * *
15750167 TTTAGGCACTATGTATACAACCCACTGAATTCATAATATGTTTATGAA
1 TTTAGGCACTATGTGTGCAACCTAC-GAATTCATCATATGTTGATGAA
15750215 TGACAGTATT
Statistics
Matches: 183, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 1 0.01
54 181 0.99
55 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (53 bp):
TTTAGGCACTATGTGTGCAACCTACGAATTCATCATATGTTGATGAACAACCG
Found at i:15756079 original size:22 final size:22
Alignment explanation
Indices: 15756054--15756104 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
15756044 GCTATAATGG
15756054 AGTATCGGTACCTTAGTATAGA
1 AGTATCGGTACCTTAGTATAGA
15756076 AGTATCGGTACCTTAGTATAGA
1 AGTATCGGTACCTTAGTATAGA
15756098 AGTATCG
1 AGTATCG
15756105 ATACTAGGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (22 bp):
AGTATCGGTACCTTAGTATAGA
Found at i:15756187 original size:116 final size:116
Alignment explanation
Indices: 15755982--15756203 Score: 277
Period size: 116 Copynumber: 1.9 Consensus size: 116
15755972 TGCTGATGGG
* * * *
15755982 GTATCGATACCAAGAGGAAGGTATCGATACCATTGATTACAAAATGTAGAAATGGGATCGATGCT
1 GTATCGATACCAAGAGAAAAGTATCGATACCATGGATTA-AAAATGTAGAAATGGGATCGATACT
* * *
15756047 ATAATGGAGTATCGGTACCTTAGTATAGAAGTATCGGTACCTTAGTATAGAA
65 ATAAGGGAGTATCGGTACCATAGTATAGAAGTATCGATACCTTAGTATAGAA
* * * *
15756099 GTATCGATACTAGGAGAAAAGTATCGATACCATGGATCT-AGAATGTAGAAATGGTATCGATACT
1 GTATCGATACCAAGAGAAAAGTATCGATACCATGGAT-TAAAAATGTAGAAATGGGATCGATACT
* * *
15756163 GA-CAGGGGGTATCGGTACCATAGTATAGTAGTATCGATACC
65 -ATAAGGGAGTATCGGTACCATAGTATAGAAGTATCGATACC
15756204 ATGGTATGGG
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
116 55 0.62
117 33 0.37
118 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.27
Consensus pattern (116 bp):
GTATCGATACCAAGAGAAAAGTATCGATACCATGGATTAAAAATGTAGAAATGGGATCGATACTA
TAAGGGAGTATCGGTACCATAGTATAGAAGTATCGATACCTTAGTATAGAA
Found at i:15756638 original size:54 final size:54
Alignment explanation
Indices: 15756574--15756864 Score: 415
Period size: 54 Copynumber: 5.4 Consensus size: 54
15756564 CAACCCATAG
*
15756574 AATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGTGTGAAACCAACAA
1 AATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGTGTGAAACCAACGA
* *
15756628 AATTCATCATATGTTGATGAACAACTGTTTAGGCACTATGTGTGCAACCCAA-GA
1 AATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGTGTG-AAACCAACGA
* * * *
15756682 AATTCATCATATGTTGATGAACATCCGTTTAGGCACTACGTGTTAAACCTACGA
1 AATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGTGTGAAACCAACGA
* * *
15756736 AATTCATCATATGTTGATGAACAACCGTCTAGGCACTATGTGTGCAAGCC-ACAA
1 AATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGTGTG-AAACCAACGA
* *
15756790 AATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGTGTGCAACCCACGA
1 AATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGTGTGAAACCAACGA
** *
15756844 AATTCAAAATATGTTTATGAA
1 AATTCATCATATGTTGATGAA
15756865 TGATCGTATT
Statistics
Matches: 211, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
53 8 0.04
54 193 0.91
55 10 0.05
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (54 bp):
AATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGTGTGAAACCAACGA
Found at i:15756745 original size:108 final size:109
Alignment explanation
Indices: 15756551--15756864 Score: 463
Period size: 108 Copynumber: 2.9 Consensus size: 109
15756541 GTGTACTTTT
* * *
15756551 GGCAATATGTGTTCAACCCATAG-AATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGT
1 GGCACTATGTGTGCAACCCACAGAAATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGT
* * *
15756615 GTGAAACCAACAAAATTCATCATATGTTGATGAACAACTGTTTA
66 GTGAAACCAACGAAATTCATCATATGTTGATGAACAACCGTCTA
* *
15756659 GGCACTATGTGTGCAACCCA-AGAAATTCATCATATGTTGATGAACATCCGTTTAGGCACTACGT
1 GGCACTATGTGTGCAACCCACAGAAATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGT
* *
15756723 GTTAAACCTACGAAATTCATCATATGTTGATGAACAACCGTCTA
66 GTGAAACCAACGAAATTCATCATATGTTGATGAACAACCGTCTA
*
15756767 GGCACTATGTGTGCAAGCCACA-AAATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGT
1 GGCACTATGTGTGCAACCCACAGAAATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGT
* * ** *
15756831 GTGCAACCCACGAAATTCAAAATATGTTTATGAA
66 GTGAAACCAACGAAATTCATCATATGTTGATGAA
15756865 TGATCGTATT
Statistics
Matches: 186, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
107 2 0.01
108 183 0.98
109 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (109 bp):
GGCACTATGTGTGCAACCCACAGAAATTCATCATATGTTGATGAACAACCGTTTAGGCACTATGT
GTGAAACCAACGAAATTCATCATATGTTGATGAACAACCGTCTA
Found at i:15769228 original size:37 final size:37
Alignment explanation
Indices: 15769177--15769305 Score: 117
Period size: 37 Copynumber: 3.6 Consensus size: 37
15769167 GTTTTCCTAA
* *
15769177 AAAAAATTTGTCTCACTTGAGACAATTTCCTTAAAAC
1 AAAAATTTTATCTCACTTGAGACAATTTCCTTAAAAC
* * *
15769214 AAAAATTTCATCTCACTTGAGATATTTTCCCTT---A-
1 AAAAATTTTATCTCACTTGAGACAATTT-CCTTAAAAC
* * *
15769248 AAAAATTTTGTCTCAC-TGAGAGAATTTCACTCAAAAC
1 AAAAATTTTATCTCACTTGAGACAATTTC-CTTAAAAC
*
15769285 -AATATTTTATCTCACTTGAGA
1 AAAAATTTTATCTCACTTGAGA
15769306 TATGTTCCCT
Statistics
Matches: 73, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
32 1 0.01
33 11 0.15
34 14 0.19
35 1 0.01
36 14 0.19
37 28 0.38
38 4 0.05
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.36
Consensus pattern (37 bp):
AAAAATTTTATCTCACTTGAGACAATTTCCTTAAAAC
Found at i:15769258 original size:71 final size:71
Alignment explanation
Indices: 15769145--15769544 Score: 364
Period size: 71 Copynumber: 5.7 Consensus size: 71
15769135 TTCGAATTAC
* * * * *
15769145 AAATTTTAACTCACTTGAGAT-TGTTTTCCTAAAAAAAATTTGTCTCACTTGAGACAATTTC-CT
1 AAATTTCATCTCACTTGAGATAT-TTTCCCTTAAAAAATTTTGTCTCACTTGAGACAATTTCACT
*
15769208 TAAAACAA
65 TGAAAC-A
* *
15769216 AAATTTCATCTCACTTGAGATATTTTCCCTTAAAAAATTTTGTCTCAC-TGAGAGAATTTCACTC
1 AAATTTCATCTCACTTGAGATATTTTCCCTTAAAAAATTTTGTCTCACTTGAGACAATTTCACTT
*
15769280 AAAACA
66 GAAACA
* * * * * * **
15769286 ATATTTTATCTCACTTGAGATATGTTCCCTT-GAAAATTTTCGTCTCACCAT-AGACCATTTCTT
1 AAATTTCATCTCACTTGAGATATTTTCCCTTAAAAAATTTT-GTCTCA-CTTGAGACAATTTCAC
*
15769349 TTGAATCA
64 TTGAAACA
* * * * * * *
15769357 AAATTTCATCCCACTTGAGATATTTTCCCTTGAAAACATTTCGTCTTACTCGAGATAGTTTCACT
1 AAATTTCATCTCACTTGAGATATTTTCCCTT-AAAAAATTTTGTCTCACTTGAGACAATTTCACT
*
15769422 CGAAACA
65 TGAAACA
* * * * ** * *
15769429 AAATTGCATCTCACATGAGATACTTTCCCTTGAAATTTTTTGTC-CACTCGAGATAATTTCACTT
1 AAATTTCATCTCACTTGAGATATTTTCCCTTAAAAAATTTTGTCTCACTTGAGACAATTTCACTT
15769493 GAAACA
66 GAAACA
* * * *
15769499 AAA-TTCATATCACTTGAGATATTTTCCTTTGAAAATTTTTGTCTCA
1 AAATTTCATCTCACTTGAGATATTTTCCCTTAAAAAATTTTGTCTCA
15769545 ATCGAGATAG
Statistics
Matches: 268, Mismatches: 52, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
69 42 0.16
70 74 0.28
71 99 0.37
72 47 0.18
73 6 0.02
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (71 bp):
AAATTTCATCTCACTTGAGATATTTTCCCTTAAAAAATTTTGTCTCACTTGAGACAATTTCACTT
GAAACA
Found at i:15769268 original size:33 final size:34
Alignment explanation
Indices: 15769145--15769558 Score: 140
Period size: 34 Copynumber: 11.8 Consensus size: 34
15769135 TTCGAATTAC
* * *
15769145 AAATTTTAACTCACTTGAGAT-TGTTTTCCTAAAA
1 AAATTTTATCTCACTTGAGATAT-TTTCCCTTAAA
* * * *
15769179 AAAATTTGTCTCACTTGAGACAATTT-CCTTAAAACAA
1 AAATTTTATCTCACTTGAGATATTTTCCCTT---A-AA
*
15769216 AAATTTCATCTCACTTGAGATATTTTCCCTTAAA
1 AAATTTTATCTCACTTGAGATATTTTCCCTTAAA
* * * * *
15769250 AAATTTTGTCTCAC-TGAGAGAATTTCACTCAAAA
1 AAATTTTATCTCACTTGAGATATTTTCCCT-TAAA
* *
15769284 CAATATTTTATCTCACTTGAGATATGTTCCCTT-GA
1 -AA-ATTTTATCTCACTTGAGATATTTTCCCTTAAA
* * * **
15769319 AAATTTTCGTCTCACCAT-AGACCA-TTTCTTTTGAATCA
1 AAATTTT-ATCTCA-CTTGAGA-TATTTTCCCTT-AA--A
* *
15769357 AAATTTCATCCCACTTGAGATATTTTCCCTTGAAA
1 AAATTTTATCTCACTTGAGATATTTTCCCTT-AAA
* ** * * * **
15769392 ACATTTCGTCTTACTCGAGATAGTTTCACTCGAAACA
1 AAATTTTATCTCACTTGAGATATTTTC-C-CTTAA-A
** * * *
15769429 AAATTGCATCTCACATGAGATACTTTCCCTTGAA
1 AAATTTTATCTCACTTGAGATATTTTCCCTTAAA
** * * * *
15769463 ATTTTTTGTC-CACTCGAGATAATTTCACTTGAAA
1 AAATTTTATCTCACTTGAGATATTTTCCCTT-AAA
* * * * *
15769497 CAAAATTCATATCACTTGAGATATTTTCCTTTGAA
1 -AAATTTTATCTCACTTGAGATATTTTCCCTTAAA
* * * * *
15769532 AATTTTTGTCTCAATCGAGATAGTTTC
1 AAATTTTATCTCACTTGAGATATTTTC
15769559 TCTCGAAACA
Statistics
Matches: 270, Mismatches: 85, Indels: 50
0.67 0.21 0.12
Matches are distributed among these distances:
33 36 0.13
34 79 0.29
35 37 0.14
36 35 0.13
37 72 0.27
38 11 0.04
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (34 bp):
AAATTTTATCTCACTTGAGATATTTTCCCTTAAA
Found at i:15769522 original size:141 final size:141
Alignment explanation
Indices: 15769183--15769570 Score: 462
Period size: 141 Copynumber: 2.7 Consensus size: 141
15769173 CTAAAAAAAA
* * *
15769183 TTTGTCTCACTTGAGACAATTTCCTTAAAACAAAAATTTCATCTCACTTGAGATATTTTCCCTTA
1 TTTGTCTCACTCGAGACAATTTCCTTGAAAC-AAAATTTCATCTCACTTGAGATATTTTCCCTTG
* * * * ** *
15769248 AAAAATTTTGTCTCACT-GAGAGAATTTCACTCAAAACAATATTTTATCTCACTTGAGATATGTT
65 AAAAATTTTGTCTCACTCGAGATAGTTTCACTCGAAACAAAATTGCATCTCACATGAGATATGTT
15769312 CCCTTGAAAATT
130 CCCTTGAAAATT
* * * * * *
15769324 TTCGTCTCAC-CATAGACCATTTCTTTTGAATCAAAATTTCATCCCACTTGAGATATTTTCCCTT
1 TTTGTCTCACTC-GAGACAATTTC-CTTGAAACAAAATTTCATCTCACTTGAGATATTTTCCCTT
* *
15769388 GAAAACATTTCGTCTTACTCGAGATAGTTTCACTCGAAACAAAATTGCATCTCACATGAGATACT
64 GAAAA-ATTTTGTCTCACTCGAGATAGTTTCACTCGAAACAAAATTGCATCTCACATGAGATA-T
*
15769453 -TTCCCTTGAAATTT
127 GTTCCCTTGAAAATT
* * *
15769467 TTTGTC-CACTCGAGATAATTTCACTTGAAACAAAA-TTCATATCACTTGAGATATTTTCCTTTG
1 TTTGTCTCACTCGAGACAATTTC-CTTGAAACAAAATTTCATCTCACTTGAGATATTTTCCCTTG
* * *
15769530 AAAATTTTTGTCTCAATCGAGATAGTTTCTCTCGAAACAAA
65 AAAAATTTTGTCTCACTCGAGATAGTTTCACTCGAAACAAA
15769571 TTCTTGAGAT
Statistics
Matches: 207, Mismatches: 34, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
140 32 0.15
141 82 0.40
142 37 0.18
143 55 0.27
144 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (141 bp):
TTTGTCTCACTCGAGACAATTTCCTTGAAACAAAATTTCATCTCACTTGAGATATTTTCCCTTGA
AAAATTTTGTCTCACTCGAGATAGTTTCACTCGAAACAAAATTGCATCTCACATGAGATATGTTC
CCTTGAAAATT
Found at i:15769550 original size:70 final size:70
Alignment explanation
Indices: 15769183--15769570 Score: 388
Period size: 70 Copynumber: 5.5 Consensus size: 70
15769173 CTAAAAAAAA
* * **
15769183 TTTGTCTCACTTGAGACAATTTC-CTTAAAACAAAAATTTCATCTCACTTGAGATATTTTCCCTT
1 TTTGTCTCACTCGAGATAATTTCACTCGAAAC-AAAA-TTCATCTCACTTGAGATATTTTCCCTT
* *
15769247 AAAAAAT
64 GAAAATT
* * * * *
15769254 TTTGTCTCACT-GAGAGAATTTCACTCAAAACAATATTTTATCTCACTTGAGATATGTTCCCTTG
1 TTTGTCTCACTCGAGATAATTTCACTCGAAACAA-AATTCATCTCACTTGAGATATTTTCCCTTG
15769318 AAAATT
65 AAAATT
* * ** ** * * *
15769324 TTCGTCTCAC-CATAGACCATTTCTTTTGAATCAAAATTTCATCCCACTTGAGATATTTTCCCTT
1 TTTGTCTCACTC-GAGATAATTTCACTCGAAACAAAA-TTCATCTCACTTGAGATATTTTCCCTT
*
15769388 GAAAACAT
64 GAAAA-TT
* * * * *
15769396 TTCGTCTTACTCGAGATAGTTTCACTCGAAACAAAATTGCATCTCACATGAGATACTTTCCCTTG
1 TTTGTCTCACTCGAGATAATTTCACTCGAAACAAAATT-CATCTCACTTGAGATATTTTCCCTTG
*
15769461 AAATTT
65 AAAATT
* * *
15769467 TTTGTC-CACTCGAGATAATTTCACTTGAAACAAAATTCATATCACTTGAGATATTTTCCTTTGA
1 TTTGTCTCACTCGAGATAATTTCACTCGAAACAAAATTCATCTCACTTGAGATATTTTCCCTTGA
15769531 AAATT
66 AAATT
* * *
15769536 TTTGTCTCAATCGAGATAGTTTCTCTCGAAACAAA
1 TTTGTCTCACTCGAGATAATTTCACTCGAAACAAA
15769571 TTCTTGAGAT
Statistics
Matches: 260, Mismatches: 48, Indels: 19
0.80 0.15 0.06
Matches are distributed among these distances:
69 33 0.13
70 104 0.40
71 70 0.27
72 52 0.20
73 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (70 bp):
TTTGTCTCACTCGAGATAATTTCACTCGAAACAAAATTCATCTCACTTGAGATATTTTCCCTTGA
AAATT
Found at i:15770180 original size:15 final size:15
Alignment explanation
Indices: 15770143--15770174 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15770133 ATTATTATGA
*
15770143 CAAATTTAATTTTGT
1 CAAAATTAATTTTGT
15770158 CAAAATTAATTTTGT
1 CAAAATTAATTTTGT
15770173 CA
1 CA
15770175 CTATTAGTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (15 bp):
CAAAATTAATTTTGT
Found at i:15770852 original size:180 final size:180
Alignment explanation
Indices: 15770334--15770875 Score: 505
Period size: 180 Copynumber: 3.0 Consensus size: 180
15770324 CGATTTTTTT
* * * * *
15770334 ACAAATG-TTTTCCT-C-TATTTTTTGGCGCCAAATTAAAGACACATGGTGACAAATTCTGTAAC
1 ACAAATGATTTTCCTCCATATTTTTTTGCGCCAAA-TAAAGTCATATAGTGACAAATTTTGTAAC
* * * * * *
15770396 TAAAAGTTTTAGTAACTATAACAAGAAAAATTGTCACAACAAATAATGAGATTTAGATTTGTTGT
65 TATAAG-TTTAATAATTATTACAA-AAAAATTGTCACAACAAATAATGAGATTAAGGTTT-TTGT
* * * * * *
15770461 GAAAAATTTTGTTTGTAATTATATATTTTAATTATAGTGACAAAACATATAGTG
127 GAAAAATTATATTTGTAGTTATATATTTTAATTATAGTGACAAAATATATTGTC
* * ** * * **
15770515 GCAAATGATTATT--TCCA-ATTTTTTGTAC-AAAAACAAAATCATATAGTGACATGTTTTGTAA
1 ACAAATGATT-TTCCTCCATATTTTTT-TGCGCCAAATAAAGTCATATAGTGACAAATTTTGTAA
* * * * *
15770576 CTATAAGCTATAATTACTT-TTACAAAAAAGTTGTCACAACAAATAATGAGATTTAAAGTTTTAG
64 CTATAAG-TTTAA-TAATTATTACAAAAAAATTGTCACAACAAATAATGAGA-TTAAGGTTTTTG
* * * *
15770640 T-AAAAATCAATTTTTGTCGTTATATGTTTTAATTATAGTGACAAAATATATTGTC
126 TGAAAAAT-TATATTTGTAGTTATATATTTTAATTATAGTGACAAAATATATTGTC
15770695 ACAAA-GATTTTCCTCCATATTTTTTTGCGCCAAA-AAAGTCATATAGTGACAAATTTTGTAACT
1 ACAAATGATTTTCCTCCATATTTTTTTGCGCCAAATAAAGTCATATAGTGACAAATTTTGTAACT
* ** *
15770758 ATAAGTGTTAATAATTATTACAAAAAATATTGTCACAA-AAATTAACGCTATTCAGGTTTTTGTG
66 ATAAGT-TTAATAATTATTACAAAAAA-ATTGTCACAACAAA-TAATGAGATTAAGGTTTTTGTG
* * * *
15770822 ACAAATTATATTTGTAGTTATAAATTTTAATTATAGTGATAACATATATTGTC
128 AAAAATTATATTTGTAGTTATATATTTTAATTATAGTGACAAAATATATTGTC
15770875 A
1 A
15770876 TAACTATTTT
Statistics
Matches: 286, Mismatches: 58, Indels: 35
0.75 0.15 0.09
Matches are distributed among these distances:
178 2 0.01
179 15 0.05
180 174 0.61
181 76 0.27
182 16 0.06
183 3 0.01
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (180 bp):
ACAAATGATTTTCCTCCATATTTTTTTGCGCCAAATAAAGTCATATAGTGACAAATTTTGTAACT
ATAAGTTTAATAATTATTACAAAAAAATTGTCACAACAAATAATGAGATTAAGGTTTTTGTGAAA
AATTATATTTGTAGTTATATATTTTAATTATAGTGACAAAATATATTGTC
Found at i:15771420 original size:425 final size:417
Alignment explanation
Indices: 15770673--15771474 Score: 1119
Period size: 425 Copynumber: 1.9 Consensus size: 417
15770663 ATGTTTTAAT
* *
15770673 TATAGTGACAAAATATATTGTCACAAAGATTTTCCTCCATATTTTTTTGCGCCAAAAAAGTCATA
1 TATAGTAACAAAATATATTGTCACAAAGATGTTCCTCCATATTTTTTTGCGCCAAAAAAGTCATA
* * * *
15770738 TAGTGACAAATTTTGTAACTATAAGTGTTAATAATTATTACAAAAAATATTGTCACAAAAATTAA
66 TAGTAACAAATTTTGTAACTATAAGTGTTAATAATTATTAAAAAAAACATTGTCACAAAAAATAA
** *
15770803 CGCTATTCAGGTTTTTGTGACAAATTATATTTGTAGTTATAAATTTTAATTATAGTGATAACATA
131 CGCTATTCAGGTTTTTGTGACAAATTATACATGTAGTTATAAATTTTAATTATAGTGATAAAATA
* * *
15770868 TATTGTCATAACTATTTTTTCTTAACTTTTTTGTTTTAAAAGTTATACTGACAATTTTTATAATT
196 TATTGTCATAACTATTTTTTCTCAACTTTTTTGTTTAAAAAGTTATACTGACAAATTTTATAATT
*
15770933 ATAATTTATAGTTATTGTTATAGAAAAAATTATCACATCAAATAATAAAATTCAAGTTTTTTGTA
261 AAAATTTATAGTTATTGTTATAGAAAAAATTATCACATCAAATAATAAAATTCAAGTTTTTTGTA
*
15770998 ATAAATTATTTTTGTACTTATATATTTTAATCATTATGAAAAATTATACTATAAGAATGATTTTT
326 ATAAATAATTTTTGTACTTATATATTTTAATCATTATGAAAAATTATACTATAAGAATGATTTTT
15771063 CCCTATTTTTTAGTATCAAAAATGTTA
391 CCCTATTTTTTAGTATCAAAAATGTTA
* * *
15771090 TATAGTAACAAAATATATTGTTATAAAGATGTTCCTCCATA-TTTTTTGTGCCAAAAAA-TCATA
1 TATAGTAACAAAATATATTGTCACAAAGATGTTCCTCCATATTTTTTTGCGCCAAAAAAGTCATA
* *
15771153 TAGTAAC-AATTTTCGTAACTATAAGTGTTTATGATTATTGCAAAAAACAAAACATTGTCACAAA
66 TAGTAACAAATTTT-GTAACTATAAGTGTTAATAATTATT----AAAA-AAAACATTGTCACAAA
* * ** * *
15771217 AAATAATGGTATTCATTTTTTTTTTGTGGCAAATTATACATGTAGTTATAAATTTTAAATTGTAG
125 AAATAACGCTATTCA---GGTTTTTGTGACAAATTATACATGTAGTTATAAATTTT-AATTATAG
* * * * * * *
15771282 TGATAAAATTTATTGTGATTAA-TA-TTTTTCTCCACTTTTTTTGTTTCAAAAATTTTTATTGAT
186 TGATAAAATATATTGTCA-TAACTATTTTTTCTCAAC-TTTTTTGTTT-AAAAAGTTATACTGAC
* * *
15771345 AAATTTTGTAATTAAAATTTATAGTTATTGTTATAGAAAAAATTATCACATTAGATAATAAAATT
248 AAATTTTATAATTAAAATTTATAGTTATTGTTATAGAAAAAATTATCACATCAAATAATAAAATT
* *
15771410 CAAGTTTTTTGTAATCAATAATTTTTGTAGTTATATATTTTAATCATTATGAAAAATTATACTAT
313 CAAGTTTTTTGTAATAAATAATTTTTGTACTTATATATTTTAATCATTATGAAAAATTATACTAT
15771475 CAACAAAAAT
Statistics
Matches: 335, Mismatches: 37, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
414 6 0.02
415 34 0.10
416 16 0.05
417 37 0.11
419 3 0.01
420 27 0.08
423 42 0.13
424 34 0.10
425 136 0.41
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.44
Consensus pattern (417 bp):
TATAGTAACAAAATATATTGTCACAAAGATGTTCCTCCATATTTTTTTGCGCCAAAAAAGTCATA
TAGTAACAAATTTTGTAACTATAAGTGTTAATAATTATTAAAAAAAACATTGTCACAAAAAATAA
CGCTATTCAGGTTTTTGTGACAAATTATACATGTAGTTATAAATTTTAATTATAGTGATAAAATA
TATTGTCATAACTATTTTTTCTCAACTTTTTTGTTTAAAAAGTTATACTGACAAATTTTATAATT
AAAATTTATAGTTATTGTTATAGAAAAAATTATCACATCAAATAATAAAATTCAAGTTTTTTGTA
ATAAATAATTTTTGTACTTATATATTTTAATCATTATGAAAAATTATACTATAAGAATGATTTTT
CCCTATTTTTTAGTATCAAAAATGTTA
Found at i:15772697 original size:3 final size:3
Alignment explanation
Indices: 15772689--15772713 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15772679 CTAAGGCTCT
15772689 ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA A
15772714 AACCCTATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:15774076 original size:18 final size:19
Alignment explanation
Indices: 15774055--15774092 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
15774045 CGAAAGTTTT
15774055 AATATATAAA-CTAA-TTAA
1 AATAT-TAAACCTAACTTAA
15774073 AATATTAAACCTAACTTAA
1 AATATTAAACCTAACTTAA
15774092 A
1 A
15774093 CTTAAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 9 0.50
19 5 0.28
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.32
Consensus pattern (19 bp):
AATATTAAACCTAACTTAA
Found at i:15775556 original size:11 final size:11
Alignment explanation
Indices: 15775540--15775581 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
15775530 TATTTATACG
15775540 TATATATATAA
1 TATATATATAA
15775551 TATATATATAA
1 TATATATATAA
15775562 T-TATGATATAA
1 TATAT-ATATAA
15775573 TA-ATATATA
1 TATATATATA
15775582 TGGCCACACA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (11 bp):
TATATATATAA
Found at i:15781007 original size:45 final size:45
Alignment explanation
Indices: 15780917--15781247 Score: 514
Period size: 45 Copynumber: 7.5 Consensus size: 45
15780907 GGTAAGTATA
* *
15780917 AAAATAAGCTTACCAGCTTATGGAAT-AATGGCAAGTATGTTGGT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGT
*
15780961 AAATTAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGT
*
15781006 AAAATAAACTTACGAGCTTATGGAATAAATGGTAAGTA---T-G-
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGT
* * *
15781046 AAAATAAGCTTATGAGCTTATGGAAT-AATGGCAAGTATGTTGCT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGT
*
15781090 AAAATAAGCTTACGAGCTTATGGAATAAATTGTAAGTATGTTGGT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGT
*
15781135 AAAATAAGCTTACGAGCTTATGGAATAAATAGTAAGTATGTTGGT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGT
*
15781180 AAAATAAGCTTATGAGCTTATGGAATAAATGGTAAGTATGTTGGT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGT
*
15781225 AAAATAAGCTTACAAGCTTATGG
1 AAAATAAGCTTACGAGCTTATGG
15781248 GATTAAATTG
Statistics
Matches: 262, Mismatches: 18, Indels: 13
0.89 0.06 0.04
Matches are distributed among these distances:
39 10 0.04
40 24 0.09
41 1 0.00
42 2 0.01
44 49 0.19
45 176 0.67
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (45 bp):
AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGT
Found at i:15781130 original size:129 final size:129
Alignment explanation
Indices: 15780900--15781260 Score: 560
Period size: 129 Copynumber: 2.7 Consensus size: 129
15780890 TTTATTGATT
* ** *
15780900 AATAAATGGTAAGTATAAAAATAAGCTTACCAGCTTATGGAATAATGGCAAGTATGTTGGTAAAT
1 AATAAATGGTAAGTATGAAAATAAGCTTATGAGCTTATGGAATAATGGCAAGTATGTTGGTAAAA
*
15780965 TAAGCTTACGAGCTTATGGAATAAATGGTAAGTATGTTGGTAAAATAAACTTACGAGCTTATGG
66 TAAGCTTACGAGCTTATGGAATAAATTGTAAGTATGTTGGTAAAATAAACTTACGAGCTTATGG
*
15781029 AATAAATGGTAAGTATGAAAATAAGCTTATGAGCTTATGGAATAATGGCAAGTATGTTGCTAAAA
1 AATAAATGGTAAGTATGAAAATAAGCTTATGAGCTTATGGAATAATGGCAAGTATGTTGGTAAAA
*
15781094 TAAGCTTACGAGCTTATGGAATAAATTGTAAGTATGTTGGTAAAATAAGCTTACGAGCTTATGG
66 TAAGCTTACGAGCTTATGGAATAAATTGTAAGTATGTTGGTAAAATAAACTTACGAGCTTATGG
* *
15781158 AATAAATAGTAAGTATGTTGGTAAAATAAGCTTATGAGCTTATGGAATAAATGGTAAGTATGTTG
1 AATAAATGGTAAGTA---T-G-AAAATAAGCTTATGAGCTTATGGAAT-AATGGCAAGTATGTTG
* *
15781223 GTAAAATAAGCTTACAAGCTTATGGGATTAAATTGTAA
60 GTAAAATAAGCTTACGAGCTTAT-GGAATAAATTGTAA
15781261 ATACTTTGAT
Statistics
Matches: 213, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
129 136 0.64
132 1 0.00
133 1 0.00
134 26 0.12
135 36 0.17
136 13 0.06
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (129 bp):
AATAAATGGTAAGTATGAAAATAAGCTTATGAGCTTATGGAATAATGGCAAGTATGTTGGTAAAA
TAAGCTTACGAGCTTATGGAATAAATTGTAAGTATGTTGGTAAAATAAACTTACGAGCTTATGG
Found at i:15787027 original size:12 final size:13
Alignment explanation
Indices: 15786998--15787030 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
15786988 ATATAATGAA
*
15786998 TTTTCAAACATCG
1 TTTTCAAACATAG
15787011 TTTTCAAA-ATAG
1 TTTTCAAACATAG
15787023 TTTTCAAA
1 TTTTCAAA
15787031 TTTTACCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.42
Consensus pattern (13 bp):
TTTTCAAACATAG
Found at i:15787214 original size:12 final size:12
Alignment explanation
Indices: 15787199--15787240 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
15787189 GTTCAAACCG
15787199 ACCTCCAAACTC
1 ACCTCCAAACTC
15787211 ACCTCCAAAC-C
1 ACCTCCAAACTC
15787222 TACCTCCAAA-TCC
1 -ACCTCCAAACT-C
15787235 ACCTCC
1 ACCTCC
15787241 TAATCCTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 1 0.04
12 25 0.93
13 1 0.04
ACGTcount: A:0.31, C:0.52, G:0.00, T:0.17
Consensus pattern (12 bp):
ACCTCCAAACTC
Found at i:15787226 original size:24 final size:24
Alignment explanation
Indices: 15787192--15787240 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
15787182 TCGAGTCGTT
15787192 CAAACCGACCTCCAAA-CTCACCTC
1 CAAACCGACCTCCAAATC-CACCTC
*
15787216 CAAACCTACCTCCAAATCCACCTC
1 CAAACCGACCTCCAAATCCACCTC
15787240 C
1 C
15787241 TAATCCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.33, C:0.51, G:0.02, T:0.14
Consensus pattern (24 bp):
CAAACCGACCTCCAAATCCACCTC
Found at i:15788330 original size:21 final size:21
Alignment explanation
Indices: 15788304--15788344 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15788294 CCGCGAAGCA
* *
15788304 ATGGATAATCGATTCAATGCT
1 ATGGATAATAGACTCAATGCT
*
15788325 ATGGATGATAGACTCAATGC
1 ATGGATAATAGACTCAATGC
15788345 GCTTACATGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (21 bp):
ATGGATAATAGACTCAATGCT
Found at i:15789220 original size:18 final size:18
Alignment explanation
Indices: 15789193--15789235 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
15789183 AAAAGGTGTG
15789193 GATA-CCCATAGGGTA-T
1 GATACCCCATAGGGTACT
15789209 CGATACCCCATAGGGTACT
1 -GATACCCCATAGGGTACT
15789228 GATACCCC
1 GATACCCC
15789236 TATACAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.17
18 19 0.79
19 1 0.04
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (18 bp):
GATACCCCATAGGGTACT
Found at i:15798027 original size:14 final size:15
Alignment explanation
Indices: 15798008--15798037 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
15797998 CATTTTATTA
15798008 TTATTTTT-TCATTT
1 TTATTTTTATCATTT
15798022 TTATTTTTATCATTT
1 TTATTTTTATCATTT
15798037 T
1 T
15798038 CCAGACACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTTTTATCATTT
Found at i:15798131 original size:21 final size:22
Alignment explanation
Indices: 15798074--15798120 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
15798064 GACCCATACT
15798074 AAAATTACAACCCAACAGGCCC
1 AAAATTACAACCCAACAGGCCC
15798096 AAAATTACAACCCAACAGGCCC
1 AAAATTACAACCCAACAGGCCC
15798118 AAA
1 AAA
15798121 TCAAGCCCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.49, C:0.34, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAATTACAACCCAACAGGCCC
Found at i:15810915 original size:24 final size:25
Alignment explanation
Indices: 15810882--15810976 Score: 81
Period size: 24 Copynumber: 4.0 Consensus size: 25
15810872 ATCAAAACAT
15810882 AATCTA-GGTCAAATATCAGATCAA
1 AATCTATGGTCAAATATCAGATCAA
* * * *
15810906 AAT-TTTGGTCAAGTATCAGATTAG
1 AATCTATGGTCAAATATCAGATCAA
* *
15810930 AATCTAT-GTCAAATATCATATCAG
1 AATCTATGGTCAAATATCAGATCAA
* * *
15810954 AATCCAT-GTCAAGTATCATATCA
1 AATCTATGGTCAAATATCAGATCA
15810977 GAATTCAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
23 1 0.02
24 56 0.95
25 2 0.03
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.32
Consensus pattern (25 bp):
AATCTATGGTCAAATATCAGATCAA
Found at i:15810965 original size:48 final size:48
Alignment explanation
Indices: 15810882--15810980 Score: 119
Period size: 48 Copynumber: 2.1 Consensus size: 48
15810872 ATCAAAACAT
** *
15810882 AATCTAGGTCAAATATCAGATCAAAATTTTGGTCAAGTATCAGATTAG
1 AATCTAGGTCAAATATCAGATCAAAATCATGGTCAAGTATCAGATCAG
* * * *
15810930 AATCTATGTCAAATATCATATCAGAATCCAT-GTCAAGTATCATATCAG
1 AATCTAGGTCAAATATCAGATCAAAAT-CATGGTCAAGTATCAGATCAG
15810978 AAT
1 AAT
15810981 TCAAATATGA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 42 0.98
49 1 0.02
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.31
Consensus pattern (48 bp):
AATCTAGGTCAAATATCAGATCAAAATCATGGTCAAGTATCAGATCAG
Found at i:15810977 original size:24 final size:24
Alignment explanation
Indices: 15810913--15810980 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
15810903 CAAAATTTTG
* * *
15810913 GTCAAGTATCAGATTAGAATCTAT
1 GTCAAGTATCATATCAGAATCCAT
*
15810937 GTCAAATATCATATCAGAATCCAT
1 GTCAAGTATCATATCAGAATCCAT
15810961 GTCAAGTATCATATCAGAAT
1 GTCAAGTATCATATCAGAAT
15810981 TCAAATATGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (24 bp):
GTCAAGTATCATATCAGAATCCAT
Found at i:15815366 original size:24 final size:24
Alignment explanation
Indices: 15815339--15815437 Score: 108
Period size: 24 Copynumber: 4.1 Consensus size: 24
15815329 ATCAAAACAT
* * * *
15815339 AATCCATGTCATGTATAAAATCAG
1 AATCCAGGTCAAGTATCAGATCAG
* * *
15815363 AATCCAAGTCAAGTATTAGATTAG
1 AATCCAGGTCAAGTATCAGATCAG
*
15815387 AATCCGGGTCAAGTATCAGATCAG
1 AATCCAGGTCAAGTATCAGATCAG
* *
15815411 AATCTAGGTCAAGTATCATATCAG
1 AATCCAGGTCAAGTATCAGATCAG
15815435 AAT
1 AAT
15815438 TCAAATATGA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCCAGGTCAAGTATCAGATCAG
Found at i:15816271 original size:12 final size:12
Alignment explanation
Indices: 15816254--15816283 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15816244 TAGGGCCATT
15816254 AGTTTTACATCA
1 AGTTTTACATCA
*
15816266 AGTTTTACATTA
1 AGTTTTACATCA
15816278 AGTTTT
1 AGTTTT
15816284 CTTTATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (12 bp):
AGTTTTACATCA
Found at i:15816416 original size:16 final size:17
Alignment explanation
Indices: 15816392--15816435 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
15816382 TCTAAATAAT
* *
15816392 TTTCATTGTT-ATTTTA
1 TTTCTTTGTTAATTATA
15816408 TTTCTTTGTTAATTATA
1 TTTCTTTGTTAATTATA
15816425 TTTCTTCTGTT
1 TTTCTT-TGTT
15816436 TTTATTAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 9 0.38
17 11 0.46
18 4 0.17
ACGTcount: A:0.16, C:0.09, G:0.07, T:0.68
Consensus pattern (17 bp):
TTTCTTTGTTAATTATA
Found at i:15816426 original size:17 final size:16
Alignment explanation
Indices: 15816392--15816440 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
15816382 TCTAAATAAT
* *
15816392 TTTCATTGTTATTTTA
1 TTTCTTTGTTATTATA
15816408 TTTCTTTGTTAATTATA
1 TTTCTTTGTT-ATTATA
*
15816425 TTTCTTCTGTTTTTAT
1 TTTCTT-TGTTATTAT
15816441 TAAGAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 9 0.32
17 15 0.54
18 4 0.14
ACGTcount: A:0.16, C:0.08, G:0.06, T:0.69
Consensus pattern (16 bp):
TTTCTTTGTTATTATA
Found at i:15819002 original size:7 final size:7
Alignment explanation
Indices: 15818991--15819030 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
15818981 TTTGGTCAAA
*
15818991 GTCAACA
1 GTCAACG
*
15818998 GTCAACC
1 GTCAACG
*
15819005 TTCAACG
1 GTCAACG
15819012 GTCAACG
1 GTCAACG
15819019 GTCAACG
1 GTCAACG
15819026 GTCAA
1 GTCAA
15819031 TGGGTCAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (7 bp):
GTCAACG
Found at i:15819804 original size:15 final size:15
Alignment explanation
Indices: 15819784--15819813 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
15819774 TAAAATTTAG
15819784 CCCCTAAATTGGGAT
1 CCCCTAAATTGGGAT
15819799 CCCCTAAATTGGGAT
1 CCCCTAAATTGGGAT
15819814 GTTACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (15 bp):
CCCCTAAATTGGGAT
Found at i:15822207 original size:21 final size:20
Alignment explanation
Indices: 15822181--15822271 Score: 100
Period size: 21 Copynumber: 4.7 Consensus size: 20
15822171 AGTAGCCATA
15822181 GGTGTATGGATACACCTGCAG
1 GGTGTATGGATACA-CTGCAG
15822202 GGTGTATGGATACACTTGCAG
1 GGTGTATGGATACAC-TGCAG
**
15822223 GGTGTATCAATACAC--CA-
1 GGTGTATGGATACACTGCAG
**
15822240 -GTGTATGGATACACTATAG
1 GGTGTATGGATACACTGCAG
15822259 GGTGTATGGATAC
1 GGTGTATGGATAC
15822272 CCTTTGACAC
Statistics
Matches: 60, Mismatches: 5, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
16 12 0.20
18 3 0.05
20 13 0.22
21 32 0.53
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (20 bp):
GGTGTATGGATACACTGCAG
Found at i:15832192 original size:28 final size:28
Alignment explanation
Indices: 15832146--15832206 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
15832136 CATATTTTAA
15832146 AAAAAATCTTGAAAATAAAAGAAAA-ATG
1 AAAAAATCTTGAAAATAAAAGAAAAGA-G
*
15832174 AAAAAA-CTTGAAAAGTAAAATAAAAGAG
1 AAAAAATCTTGAAAA-TAAAAGAAAAGAG
15832202 AAAAA
1 AAAAA
15832207 CTTTAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 8 0.27
28 21 0.70
29 1 0.03
ACGTcount: A:0.70, C:0.03, G:0.11, T:0.15
Consensus pattern (28 bp):
AAAAAATCTTGAAAATAAAAGAAAAGAG
Found at i:15832463 original size:26 final size:27
Alignment explanation
Indices: 15832418--15832468 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
15832408 GCGTGCTGAG
*
15832418 TAGATCTTCTAGAAACCG-CCGTTTAC
1 TAGACCTTCTAGAAACCGCCCGTTTAC
**
15832444 TAGACCTTCTAGAATGCGCCCGTTT
1 TAGACCTTCTAGAAACCGCCCGTTT
15832469 TTCAATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (27 bp):
TAGACCTTCTAGAAACCGCCCGTTTAC
Found at i:15850933 original size:17 final size:18
Alignment explanation
Indices: 15850894--15850935 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
15850884 AATAAGTGTT
*
15850894 CTTGAAAGAAAAATGAAT
1 CTTGAAAGAAAAATGAAG
* *
15850912 ATTGAAAGAAAAAT-AGG
1 CTTGAAAGAAAAATGAAG
15850929 CTTGAAA
1 CTTGAAA
15850936 TGCTCAAACT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.55, C:0.05, G:0.19, T:0.21
Consensus pattern (18 bp):
CTTGAAAGAAAAATGAAG
Found at i:15851340 original size:64 final size:64
Alignment explanation
Indices: 15851225--15851348 Score: 160
Period size: 64 Copynumber: 1.9 Consensus size: 64
15851215 GTGCACCAAG
* *** * *
15851225 TGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAATAGCTTGAGTGCATCGGTGCATTGCT
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAATAACCCAAATGCATCGATGCATTGCT
* *
15851289 TGTGCATCGATGCATGAAATGCATTCGATGTTTTAATAA-AACCCAAATGCATCGATGCAT
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTGAA-AATAACCCAAATGCATCGATGCAT
15851349 GAAATGCATT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
64 49 0.96
65 2 0.04
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (64 bp):
TGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAATAACCCAAATGCATCGATGCATTGCT
Found at i:15851770 original size:21 final size:21
Alignment explanation
Indices: 15851745--15851797 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
15851735 AAATTACTAT
15851745 TACTCCCCCTTACTATAACAC
1 TACTCCCCCTTACTATAACAC
15851766 TACTCCCCCTTACTATAACAC
1 TACTCCCCCTTACTATAACAC
*
15851787 TTCTCCCCCTT
1 TACTCCCCCTT
15851798 TTTGTTAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.23, C:0.45, G:0.00, T:0.32
Consensus pattern (21 bp):
TACTCCCCCTTACTATAACAC
Found at i:15852437 original size:18 final size:18
Alignment explanation
Indices: 15852414--15852456 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
15852404 GTCAGACGTC
15852414 GGAGCAGGAGAAGGAG-GA
1 GGAGCAGGAG-AGGAGCGA
* *
15852432 GGAGCATGAGAGGAGCTA
1 GGAGCAGGAGAGGAGCGA
15852450 GGAGCAG
1 GGAGCAG
15852457 TTCGTGAGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.35, C:0.09, G:0.51, T:0.05
Consensus pattern (18 bp):
GGAGCAGGAGAGGAGCGA
Found at i:15857127 original size:54 final size:54
Alignment explanation
Indices: 15857063--15857170 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
15857053 GTTTGCACAA
15857063 TTCTAGAACAAAGAAAGAACACTCAAGAATAAATACAATTGAGCACAATAAGTG
1 TTCTAGAACAAAGAAAGAACACTCAAGAATAAATACAATTGAGCACAATAAGTG
*
15857117 TTCTAGAACAAAGAAAGAACACTCAAGAATAAATACCATTGAGCACAATAAGTG
1 TTCTAGAACAAAGAAAGAACACTCAAGAATAAATACAATTGAGCACAATAAGTG
15857171 CTCTTGAAAG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.19
Consensus pattern (54 bp):
TTCTAGAACAAAGAAAGAACACTCAAGAATAAATACAATTGAGCACAATAAGTG
Found at i:15861988 original size:43 final size:43
Alignment explanation
Indices: 15861856--15861988 Score: 176
Period size: 44 Copynumber: 3.0 Consensus size: 43
15861846 TGCTGGAGAA
* * *
15861856 AGAAATGATAAATGTTGGGGTATTATTGGAGGCTCATATCATCC
1 AGAAATGATAAATGTTGGGGT-TTTTTGAAGGCCCATATCATCC
* * *
15861900 ATAAATGATAAATGTTGGGGCATTTTTGAAGGCCCATATAATCC
1 AGAAATGATAAATGTTGGGG-TTTTTTGAAGGCCCATATCATCC
* *
15861944 AGAAATGATAAATGTTGGGGTTTTTTTAAGGCCCATATCTTCC
1 AGAAATGATAAATGTTGGGGTTTTTTGAAGGCCCATATCATCC
15861987 AG
1 AG
15861989 GAATACAAGA
Statistics
Matches: 77, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
43 21 0.27
44 56 0.73
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.33
Consensus pattern (43 bp):
AGAAATGATAAATGTTGGGGTTTTTTGAAGGCCCATATCATCC
Found at i:15863782 original size:133 final size:133
Alignment explanation
Indices: 15863252--15864359 Score: 1079
Period size: 133 Copynumber: 8.4 Consensus size: 133
15863242 ATTGAACTTA
* * * * * * *
15863252 ATTCAGTATTCTCTGAAGAATAG-GGAA-AAACCAACATTTCCAGATTTGATTTACCCTGAATAA
1 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCCTAAAGAA
* ** * * * * * * *
15863315 GTAGTGGAGTAGATCCCTTTTTTCCAGATTTTATCTTTCC-TAAGGAACAATTGAACAAATCTAC
66 GCAGCAGAGTAGATCCCCTTTTTCTATATTTGATC-TTCCATGAGGAATAATGGAACAAATCTAC
15863379 CTCG
130 CTCG
* * * *
15863383 ATTCAATATTCCCTAAAGAACAATGGAATGAACCAACATTT-TAGATCTGATTTA-CCTTAAGAA
1 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCCTAAAGAA
* * * * * * *
15863446 GCAGAAGAGTAGATCCCCATTCTCTATATTTGATCTTACATGAGGAACAGTGGAACAAATCTGCC
66 GCAGCAGAGTAGATCCCCTTTTTCTATATTTGATCTTCCATGAGGAATAATGGAACAAATCTACC
15863511 TCG
131 TCG
* * * * * *
15863514 AATAAATATTCACTGAAGAACAGTAGAATGAACCAACATTTCCAGTTCTAATTTACCCTAAAGAA
1 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCCTAAAGAA
* * * * * * **
15863579 GCAACAAAGTAGAT-CCCTTTTTCCT-TATTAGATCTTCCATAAGGAATAATGTAACAAAGCTGT
66 GCAGCAGAGTAGATCCCCTTTTT-CTATATTTGATCTTCCATGAGGAATAATGGAACAAATCTAC
*
15863642 CTTG
130 CTCG
* * * * * ** *
15863646 ATTCAATATTCCCTGAATAATAGTGGAATTAATCAACATTTCCAGATATGATTTACCCTGGACAA
1 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCCTAAAGAA
* * * * * * *
15863711 GTAGCCGAGCATATCCCCTTTTTCTAGATTTGATCTTCCATGAGGAATAATTGAACAAATCTGCC
66 GCAGCAGAGTAGATCCCCTTTTTCTATATTTGATCTTCCATGAGGAATAATGGAACAAATCTACC
15863776 TCG
131 TCG
*
15863779 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACTTTTCCAGATCTGATTTACCCTAAAGAA
1 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCCTAAAGAA
* * * * * * * *
15863844 GCAACAAAGCAAATCTCCTTTTTAC-ATATTTGATCTTCCCTGAGGAACAGTGGAACAAATCTAC
66 GCAGCAGAGTAGATCCCCTTTTT-CTATATTTGATCTTCCATGAGGAATAATGGAACAAATCTAC
15863908 CTCG
130 CTCG
* * *
15863912 ATTAAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCATGAAGAA
1 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCCTAAAGAA
* * * *
15863977 GCACCAGAATAGATCCCCTTTTTCTATATTTGATATT-CACTGAGGAA-CATGGAACAAATCTAC
66 GCAGCAGAGTAGATCCCCTTTTTCTATATTTGATCTTCCA-TGAGGAATAATGGAACAAATCTAC
15864040 CTCG
130 CTCG
* * ** * * * * *
15864044 ATTCAATATTCCCTGAAGAGCATTAAAATGAACCAACATTTTC-GTATATGATTTATCCTGACGA
1 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAG-ATCTGATTTACCCTAAAGA
* * * * * * *
15864108 AGTAGCGGAGCAAATCCCCTTTTTCTATATTTGATCTTCCTTGAGGAATAGTGGAACAAATCTGC
65 AGCAGCAGAGTAGATCCCCTTTTTCTATATTTGATCTTCCATGAGGAATAATGGAACAAATCTAC
15864173 CTCG
130 CTCG
* * ** ** * * *
15864177 ATTTAATATTCCTTGAAGAGTAGTGGAATGAATAAACTTTTCTAGTTCTGATTTACCCTAAAGAA
1 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCCTAAAGAA
** * * * * *
15864242 GCATTAGAGTAGAT-CCCTTTTATCCAGATTTGATCTTCCCTGAGGAATATTGGAAAAAATCTAC
66 GCAGCAGAGTAGATCCCCTTTT-TCTATATTTGATCTTCCATGAGGAATAATGGAACAAATCTAC
*
15864306 CTCC
130 CTCG
* * * *
15864310 ATTCAATATTCCCTGAAGAATAGTGGAATGAATCAACGTTTCCATATCTG
1 ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTG
15864360 TTCTACCTAG
Statistics
Matches: 792, Mismatches: 169, Indels: 30
0.80 0.17 0.03
Matches are distributed among these distances:
130 3 0.00
131 111 0.14
132 242 0.31
133 434 0.55
134 2 0.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (133 bp):
ATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCCTAAAGAA
GCAGCAGAGTAGATCCCCTTTTTCTATATTTGATCTTCCATGAGGAATAATGGAACAAATCTACC
TCG
Found at i:15863797 original size:265 final size:263
Alignment explanation
Indices: 15863367--15864353 Score: 1007
Period size: 265 Copynumber: 3.7 Consensus size: 263
15863357 AGGAACAATT
* * * * * * *
15863367 GAACAAATCTACCTCGATTCAATATTCCCTAAAGAACAATGGAATGAACCAACATTT-TAGATCT
1 GAACAAATCTGCCTCGATTAAATATTCCCTGAAGAATAGTGGAATGAATCAACATTTCCAGATCT
* ** * * * * * * *
15863431 GATTTA-CCTTAAGAAGCAGAAGAGTAGATCCCCATTCTCTATATTTGATCTTACATGAGGAACA
66 GATTTACCCTGAAGAAGCA-CCGAGAATATCCCCTTTTTCTAGATTTGATCTTCCATGAGGAATA
* * * * *
15863495 GTGGAACAAATCTGCCTCGAATAAATATTCACTGAAGAACAGTAGAATGAACCAACATTTCCAGT
130 ATGGAACAAATCTACCTCGATTCAATATTCCCTGAAGAACAGTAGAATGAACCAACATTTCCAGT
* * * * *
15863560 TCTAATTTACCCTAAAGAAGCAACAAAGTAGATCCCTTTTTCCTTATTAGATCTTCCATAAGGAA
195 TCTGATTTACCCTAAAGAAGCAACAAAGCAAATCCCTTTTT-CTTATTTGATCTTCCATGAGGAA
*
15863625 TAATG
259 TAGTG
* * * * * * * *
15863630 TAACAAAGCTGTCTTGATTCAATATTCCCTGAATAATAGTGGAATTAATCAACATTTCCAGATAT
1 GAACAAATCTGCCTCGATTAAATATTCCCTGAAGAATAGTGGAATGAATCAACATTTCCAGATCT
* * * *
15863695 GATTTACCCTGGACAAGTAGCCGAGCATATCCCCTTTTTCTAGATTTGATCTTCCATGAGGAATA
66 GATTTACCCTGAAGAAGCA-CCGAGAATATCCCCTTTTTCTAGATTTGATCTTCCATGAGGAATA
* * * * *
15863760 ATTGAACAAATCTGCCTCGATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACTTTTCCAGA
130 ATGGAACAAATCTACCTCGATTCAATATTCCCTGAAGAACAGTAGAATGAACCAACATTTCCAGT
* *
15863825 TCTGATTTACCCTAAAGAAGCAACAAAGCAAATCTCCTTTTTACATATTTGATCTTCCCTGAGGA
195 TCTGATTTACCCTAAAGAAGCAACAAAGCAAATC-CCTTTTT-CTTATTTGATCTTCCATGAGGA
*
15863890 ACAGTG
258 ATAGTG
* * *
15863896 GAACAAATCTACCTCGATTAAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCT
1 GAACAAATCTGCCTCGATTAAATATTCCCTGAAGAATAGTGGAATGAATCAACATTTCCAGATCT
* * *
15863961 GATTTACCATGAAGAAGCACC-AGAATAGATCCCCTTTTTCTATATTTGATATT-CACTGAGGAA
66 GATTTACCCTGAAGAAGCACCGAGAAT--ATCCCCTTTTTCTAGATTTGATCTTCCA-TGAGGAA
* * * * *
15864024 -CATGGAACAAATCTACCTCGATTCAATATTCCCTGAAGAGCATTAAAATGAACCAACATTTTC-
128 TAATGGAACAAATCTACCTCGATTCAATATTCCCTGAAGAACAGTAGAATGAACCAACATTTCCA
* * * * * * ** *
15864087 GTATATGATTTATCCTGACGAAGTAGCGGAGCAAATCCCCTTTTTCTATATTTGATCTTCCTTGA
193 GT-TCTGATTTACCCTAAAGAAGCAACAAAGCAAAT-CCCTTTTTCT-TATTTGATCTTCCATGA
15864152 GGAATAGTG
255 GGAATAGTG
* * * * * * *
15864161 GAACAAATCTGCCTCGATTTAATATTCCTTGAAGAGTAGTGGAATGAATAAACTTTTCTAGTTCT
1 GAACAAATCTGCCTCGATTAAATATTCCCTGAAGAATAGTGGAATGAATCAACATTTCCAGATCT
* ** * * * *
15864226 GATTTACCCTAAAGAAGCATTAGAGTAGAT-CCCTTTTATCCAGATTTGATCTTCCCTGAGGAAT
66 GATTTACCCTGAAGAAGCA-CCGAGAATATCCCCTTTT-TCTAGATTTGATCTTCCATGAGGAAT
* * * * * * *
15864290 ATTGGAAAAAATCTACCTCCATTCAATATTCCCTGAAGAATAGTGGAATGAATCAACGTTTCCA
129 AATGGAACAAATCTACCTCGATTCAATATTCCCTGAAGAACAGTAGAATGAACCAACATTTCCA
15864354 TATCTGTTCT
Statistics
Matches: 594, Mismatches: 115, Indels: 26
0.81 0.16 0.04
Matches are distributed among these distances:
263 46 0.08
264 24 0.04
265 340 0.57
266 181 0.30
267 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30
Consensus pattern (263 bp):
GAACAAATCTGCCTCGATTAAATATTCCCTGAAGAATAGTGGAATGAATCAACATTTCCAGATCT
GATTTACCCTGAAGAAGCACCGAGAATATCCCCTTTTTCTAGATTTGATCTTCCATGAGGAATAA
TGGAACAAATCTACCTCGATTCAATATTCCCTGAAGAACAGTAGAATGAACCAACATTTCCAGTT
CTGATTTACCCTAAAGAAGCAACAAAGCAAATCCCTTTTTCTTATTTGATCTTCCATGAGGAATA
GTG
Found at i:15864049 original size:398 final size:393
Alignment explanation
Indices: 15863252--15864359 Score: 1273
Period size: 398 Copynumber: 2.8 Consensus size: 393
15863242 ATTGAACTTA
* * * * *
15863252 ATTCAGTATTCTCTGAAGAATAG-GGAA-AAACCAACATTTCCAGATTTGATTTACCCTGAATAA
1 ATTCAATATTCCCTGAAGAATAGTGGAATAAACCAACATTTCCAGATATGATTTACCCTGGACAA
* * * * * * * * *
15863315 GTAGTGGAGTAGATCCCTTTTTTCCAGATTTTATCTTTCCTAAGGAACAATTGAACAAATCTACC
66 GTAGCGGAGCAAATCCCCTTTTTCTAGATTTGATC-TTCCTGAGGAATAATTGAACAAATCTGCC
* * *
15863380 TCGATTCAATATTCCCTAAAGAACAATGGAATGAACCAACATTTT-AGATCTGATTTA-CCTTAA
130 TCGATTCAATATTCCCTGAAGAACAGTGGAATGAACCAAC-TTTTCAGATCTGATTTACCCTAAA
* * * *
15863443 GAAGCAGAAGAGTAGATCCCCATTCTCTATATTTGATCTTACATGAGGAACAGTGGAACAAATCT
194 GAAGCA-AAGAGTAGAT-CCCTTTTTC-ATATTTGATCTTCCCTGAGGAACAGTGGAACAAATCT
* * * * * * *
15863508 GCCTCGAATAAATATTCACTGAAGAACAGTAGAATGAACCAACATTTCCAGTTCTAATTTACCCT
256 ACCTCGATTAAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCAT
* *
15863573 AAAGAAGCAACAAAGTAGATCCCTTTTTCCTTATTAGATCTTCCATAAGGAATAATGTAACAAAG
321 AAAGAAGCAACAAAGTAGATCCCTTTTTCCTTATTAGATATTCCATAAGGAATAATGGAACAAAG
** *
15863638 CTGTCTTG
386 CTACCTCG
* * *
15863646 ATTCAATATTCCCTGAATAATAGTGGAATTAATCAACATTTCCAGATATGATTTACCCTGGACAA
1 ATTCAATATTCCCTGAAGAATAGTGGAATAAACCAACATTTCCAGATATGATTTACCCTGGACAA
* *
15863711 GTAGCCGAGCATATCCCCTTTTTCTAGATTTGATCTTCCATGAGGAATAATTGAACAAATCTGCC
66 GTAGCGGAGCAAATCCCCTTTTTCTAGATTTGATCTTCC-TGAGGAATAATTGAACAAATCTGCC
15863776 TCGATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACTTTTCCAGATCTGATTTACCCTAAA
130 TCGATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACTTTT-CAGATCTGATTTACCCTAAA
* * *
15863841 GAAGCAACAAAGCAAATCTCCTTTTTACATATTTGATCTTCCCTGAGGAACAGTGGAACAAATCT
194 GAAGCAA-AGAGTAGATC-CCTTTTT-CATATTTGATCTTCCCTGAGGAACAGTGGAACAAATCT
15863906 ACCTCGATTAAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCAT
256 ACCTCGATTAAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCAT
* * * * *
15863971 GAAGAAGCACCAGAA-TAGATCCCCTTTTT-CTATATTTGATATT-CACTGAGGAA-CATGGAAC
321 AAAGAAGCAACA-AAGTAGAT-CCCTTTTTCCT-TATTAGATATTCCA-TAAGGAATAATGGAAC
*
15864032 AAATCTACCTCG
382 AAAGCTACCTCG
** * ** * * *
15864044 ATTCAATATTCCCTGAAGAGCATTAAAATGAACCAACATTTTC-GTATATGATTTATCCT-GACG
1 ATTCAATATTCCCTGAAGAATAGTGGAATAAACCAACATTTCCAG-ATATGATTTACCCTGGAC-
* * *
15864107 AAGTAGCGGAGCAAATCCCCTTTTTCTATATTTGATCTTCCTTGAGGAATAGTGGAACAAATCTG
64 AAGTAGCGGAGCAAATCCCCTTTTTCTAGATTTGATCTTCC-TGAGGAATAATTGAACAAATCTG
* * ** ** *
15864172 CCTCGATTTAATATTCCTTGAAGAGTAGTGGAATGAATAAACTTTTCTAGTTCTGATTTACCCTA
128 CCTCGATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACTTTTC-AGATCTGATTTACCCTA
* * * * *
15864237 AAGAAGCATTAGAGTAGATCCCTTTTATCCAGATTTGATCTTCCCTGAGGAATATTGGAAAAAAT
192 AAGAAGCA-AAGAGTAGATCCCTTTT-T-CATATTTGATCTTCCCTGAGGAACAGTGGAACAAAT
* * * * * *
15864302 CTACCTCCATTCAATATTCCCTGAAGAATAGTGGAATGAATCAACGTTTCCATATCTG
254 CTACCTCGATTAAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTG
15864360 TTCTACCTAG
Statistics
Matches: 612, Mismatches: 84, Indels: 32
0.84 0.12 0.04
Matches are distributed among these distances:
394 20 0.03
395 12 0.02
396 119 0.19
397 25 0.04
398 410 0.67
399 26 0.04
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (393 bp):
ATTCAATATTCCCTGAAGAATAGTGGAATAAACCAACATTTCCAGATATGATTTACCCTGGACAA
GTAGCGGAGCAAATCCCCTTTTTCTAGATTTGATCTTCCTGAGGAATAATTGAACAAATCTGCCT
CGATTCAATATTCCCTGAAGAACAGTGGAATGAACCAACTTTTCAGATCTGATTTACCCTAAAGA
AGCAAAGAGTAGATCCCTTTTTCATATTTGATCTTCCCTGAGGAACAGTGGAACAAATCTACCTC
GATTAAATATTCCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTACCATAAAGA
AGCAACAAAGTAGATCCCTTTTTCCTTATTAGATATTCCATAAGGAATAATGGAACAAAGCTACC
TCG
Found at i:15867712 original size:17 final size:17
Alignment explanation
Indices: 15867681--15867735 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 17
15867671 TTTCGTATCC
*
15867681 TATATATTTTT-TTTAT
1 TATATTTTTTTATTTAT
*
15867697 TATATTTTTTTATTTAC
1 TATATTTTTTTATTTAT
15867714 TATATTCCTTTTTTATTTAT
1 TATA-T--TTTTTTATTTAT
15867734 TA
1 TA
15867736 ATTATTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 10 0.31
17 8 0.25
18 1 0.03
20 13 0.41
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (17 bp):
TATATTTTTTTATTTAT
Found at i:15867717 original size:33 final size:32
Alignment explanation
Indices: 15867680--15867752 Score: 78
Period size: 33 Copynumber: 2.3 Consensus size: 32
15867670 ATTTCGTATC
* **
15867680 CTATATAT-TTTTTTTATTATATTTTTTTATTTA
1 CTATATATCCTTTTTTATT-TA-TTAATTATTTA
15867713 CTATAT-TCCTTTTTTATTTATTAATTATTTA
1 CTATATATCCTTTTTTATTTATTAATTATTTA
*
15867744 TTATATATC
1 CTATATATC
15867753 TTATATCATT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
31 14 0.41
32 5 0.15
33 15 0.44
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (32 bp):
CTATATATCCTTTTTTATTTATTAATTATTTA
Found at i:15868126 original size:12 final size:12
Alignment explanation
Indices: 15868092--15868131 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
15868082 TGTTTTAACA
15868092 TTTTATTCATTTT
1 TTTTATT-ATTTT
*
15868105 TTATTTTTATTTT
1 TT-TTATTATTTT
15868118 TTTTATTATTTT
1 TTTTATTATTTT
15868130 TT
1 TT
15868132 ACATGTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 11 0.46
13 9 0.38
14 4 0.17
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTATTATTTT
Found at i:15868170 original size:25 final size:26
Alignment explanation
Indices: 15868099--15868170 Score: 60
Period size: 25 Copynumber: 2.8 Consensus size: 26
15868089 ACATTTTATT
* * *
15868099 CATTTTTTATT-TTTATTTTTTTTAT
1 CATTTTTTCTTGTTTATTTATTTTAC
* *
15868124 TATTTTTTACATGTTT-TGTTATTTT-C
1 CATTTTTT-CTTGTTTAT-TTATTTTAC
15868150 CATTTTTTCTTGTTTATTTAT
1 CATTTTTTCTTGTTTATTTAT
15868171 ATTCTCACGT
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
25 17 0.47
26 10 0.28
27 9 0.25
ACGTcount: A:0.15, C:0.07, G:0.04, T:0.74
Consensus pattern (26 bp):
CATTTTTTCTTGTTTATTTATTTTAC
Found at i:15871310 original size:14 final size:13
Alignment explanation
Indices: 15871289--15871340 Score: 61
Period size: 14 Copynumber: 3.9 Consensus size: 13
15871279 CAATCAGAAC
15871289 AAAAAGAGAAAAA
1 AAAAAGAGAAAAA
*
15871302 AGCAAAGAGAAAATA
1 A-AAAAGAGAAAA-A
15871317 AAAAAGAGAAAAA
1 AAAAAGAGAAAAA
*
15871330 ATAAAGA-AAAA
1 AAAAAGAGAAAA
15871341 TTGAAGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
12 4 0.12
13 8 0.24
14 20 0.59
15 2 0.06
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.04
Consensus pattern (13 bp):
AAAAAGAGAAAAA
Found at i:15871335 original size:27 final size:27
Alignment explanation
Indices: 15871289--15871341 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
15871279 CAATCAGAAC
15871289 AAAAAGAGAAAAAAGCAAAGAGAAAATA
1 AAAAAGAGAAAAAAGCAAAGA-AAAATA
*
15871317 AAAAAGAGAAAAAA-TAAAGAAAAAT
1 AAAAAGAGAAAAAAGCAAAGAAAAAT
15871342 TGAAGAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 5 0.21
27 5 0.21
28 14 0.58
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (27 bp):
AAAAAGAGAAAAAAGCAAAGAAAAATA
Found at i:15871536 original size:69 final size:69
Alignment explanation
Indices: 15871413--15871552 Score: 228
Period size: 69 Copynumber: 2.0 Consensus size: 69
15871403 GATTCAAACT
* *
15871413 ATGAGATTGATCAAGCACAATCATTTCCGAATCACTGAACCACTTCACTCGAAGATCCTAGAGCA
1 ATGAGATTGATCAAGCACAATCATTTCCGAATCACTGAACCACTTCACTAGAAGATCATAGAGCA
15871478 TCAA
66 TCAA
* *
15871482 ATGAGATTGATCAAGCACAATCATTTCTGAATCACTGAATCAC-TCAACTAGAAGATCATAGAGC
1 ATGAGATTGATCAAGCACAATCATTTCCGAATCACTGAACCACTTC-ACTAGAAGATCATAGAGC
15871546 ATCAA
65 ATCAA
15871551 AT
1 AT
15871553 ATACGAGCAG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
68 2 0.03
69 64 0.97
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (69 bp):
ATGAGATTGATCAAGCACAATCATTTCCGAATCACTGAACCACTTCACTAGAAGATCATAGAGCA
TCAA
Found at i:15873062 original size:37 final size:38
Alignment explanation
Indices: 15873007--15873081 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 38
15872997 GAAGATTTTA
* * *
15873007 TCTCGCTTGAGATAGTTTCCCTTGAAACA-AAATATTG
1 TCTCCCTTGAGACAGTTTCCCTTGAAACATAAACATTG
*
15873044 TCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTG
1 TCTCCCTTGAGACAGTTTCCCTTGAAACATAAACATTG
15873082 AAATCATTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
37 26 0.79
38 7 0.21
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (38 bp):
TCTCCCTTGAGACAGTTTCCCTTGAAACATAAACATTG
Found at i:15873135 original size:36 final size:36
Alignment explanation
Indices: 15873088--15873177 Score: 153
Period size: 36 Copynumber: 2.5 Consensus size: 36
15873078 ATTGAAATCA
*
15873088 TTTCCCTTGAAATAAATTTCGTCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
*
15873124 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
*
15873160 TATCCCTTGAAACAAATT
1 TTTCCCTTGAAACAAATT
15873178 ATTTGAATAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
Found at i:15873199 original size:101 final size:101
Alignment explanation
Indices: 15873007--15873238 Score: 279
Period size: 101 Copynumber: 2.3 Consensus size: 101
15872997 GAAGATTTTA
* * * *
15873007 TCTCGCTTGAGATAGTTTCCCTTGAAACAAAATATTGTCTCCCTTGAGACAGTTTCTCTTGAAAC
1 TCTCCCTTGAGACAGTTTCCCTTGAAAC-AAATATTGTCTCCCTTGAGACAGTATCCCTTGAAAC
* *
15873072 ATAAACATTGAAATCATTTCCCTTGAAATAAATTTCG
65 ATAAACATTGAAATCATTTCACTTGAAACAAATTTCG
* * *
15873109 TCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTATCCCTTGAAACA
1 TCTCCCTTGAGACAGTTTCCCTTGAAACAAATATTGTCTCCCTTGAGACAGTATCCCTTGAAACA
** * * * *
15873174 -AATTATTTGAATAT-GTTTTATTTGAAACAAATTTTG
66 TAAACA-TTGAA-ATCATTTCACTTGAAACAAATTTCG
*
15873210 TCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TCTCCCTTGAGACAGTTTCCCTTGAAACA
15873239 CAAAATCTTC
Statistics
Matches: 112, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
100 3 0.03
101 81 0.72
102 28 0.25
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.38
Consensus pattern (101 bp):
TCTCCCTTGAGACAGTTTCCCTTGAAACAAATATTGTCTCCCTTGAGACAGTATCCCTTGAAACA
TAAACATTGAAATCATTTCACTTGAAACAAATTTCG
Found at i:15874067 original size:43 final size:43
Alignment explanation
Indices: 15874002--15874098 Score: 167
Period size: 43 Copynumber: 2.3 Consensus size: 43
15873992 AGAGCCAATT
*
15874002 TCAACTTCATATCGAGGGATATTAGACTCAAGACAACACAAGC
1 TCAACTTCACATCGAGGGATATTAGACTCAAGACAACACAAGC
* *
15874045 TCATCTTCACATCGAGGGATATTGGACTCAAGACAACACAAGC
1 TCAACTTCACATCGAGGGATATTAGACTCAAGACAACACAAGC
15874088 TCAACTTCACA
1 TCAACTTCACA
15874099 ATGAAGGGGC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (43 bp):
TCAACTTCACATCGAGGGATATTAGACTCAAGACAACACAAGC
Found at i:15874611 original size:85 final size:83
Alignment explanation
Indices: 15874432--15874611 Score: 238
Period size: 83 Copynumber: 2.1 Consensus size: 83
15874422 ATCCAACTCA
* * * *
15874432 AAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGACACATAATT
1 AAGAAGGGTTATCTATCAACAAAGACCTTCGAGTTTGACTACACTCAACTCCAAGAAACATAATT
*
15874497 TACAGCATAACTCAAGGC
66 TACAGCACAACTCAAGGC
* *
15874515 AAGAAGGGTTATCTATCATCAAAGACCTTCGAGTTTGACTACATTCAACT-CAGAGGTAAATCA-
1 AAGAAGGGTTATCTATCAACAAAGACCTTCGAGTTTGACTACACTCAACTCCA-A-G-AAA-CAT
*
15874578 AATTTACAGCACAGCTCAAGGC
62 AATTTACAGCACAACTCAAGGC
15874600 AAGAAGGGTTAT
1 AAGAAGGGTTAT
15874612 TTGTCAACGA
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
82 2 0.02
83 46 0.54
84 1 0.01
85 34 0.40
86 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (83 bp):
AAGAAGGGTTATCTATCAACAAAGACCTTCGAGTTTGACTACACTCAACTCCAAGAAACATAATT
TACAGCACAACTCAAGGC
Found at i:15875722 original size:23 final size:22
Alignment explanation
Indices: 15875674--15875741 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 22
15875664 TATATTTTTA
*
15875674 ATTATATTTTTTATTTATTTACTAT
1 ATTAT-TTTTTTATTTA--TATTAT
*
15875699 ATTCCTTTTTTTATTTATATTAT
1 ATT-ATTTTTTTATTTATATTAT
*
15875722 ATTATTTTTATTATATATAT
1 ATTATTTTT-TTATTTATAT
15875742 CTTATATCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
22 5 0.14
23 17 0.46
25 14 0.38
26 1 0.03
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (22 bp):
ATTATTTTTTTATTTATATTAT
Found at i:15875728 original size:14 final size:14
Alignment explanation
Indices: 15875709--15875748 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
15875699 ATTCCTTTTT
15875709 TTATTTATATTATA
1 TTATTTATATTATA
*
15875723 TTATTTTTATTATA
1 TTATTTATATTATA
15875737 TATATCTTATAT
1 T-TAT-TTATAT
15875749 CATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 14 0.64
15 3 0.14
16 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTTATATTATA
Found at i:15875729 original size:21 final size:21
Alignment explanation
Indices: 15875678--15875739 Score: 54
Period size: 25 Copynumber: 2.8 Consensus size: 21
15875668 TTTTTAATTA
*
15875678 TATTTTTTATTTATTTACTATAT
1 TATTTTTTATTTA--TATTATAT
*
15875701 TCCTTTTTTTATTTATATTATAT
1 T--ATTTTTTATTTATATTATAT
15875724 TA-TTTTTATTATATAT
1 TATTTTTTATT-TATAT
15875740 ATCTTATATC
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
20 8 0.24
21 5 0.15
23 9 0.27
25 11 0.33
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (21 bp):
TATTTTTTATTTATATTATAT
Found at i:15875908 original size:17 final size:17
Alignment explanation
Indices: 15875881--15875923 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
15875871 TATTTAAATA
* *
15875881 TATTATATTTTTACT-T
1 TATTTTATTTTTTCTGT
15875897 TATTTTATTTTTTCTGT
1 TATTTTATTTTTTCTGT
15875914 TATTTT-TTTT
1 TATTTTATTTT
15875924 CTTAATATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (17 bp):
TATTTTATTTTTTCTGT
Found at i:15879863 original size:11 final size:11
Alignment explanation
Indices: 15879839--15879878 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
15879829 GATAGTTTTA
15879839 TTTATT-AT-T
1 TTTATTCATAT
15879848 TTTATTCATAT
1 TTTATTCATAT
15879859 TTTATTCATAT
1 TTTATTCATAT
*
15879870 TGTATTCAT
1 TTTATTCAT
15879879 GAAGTTTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
9 6 0.21
10 2 0.07
11 20 0.71
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (11 bp):
TTTATTCATAT
Found at i:15885378 original size:14 final size:14
Alignment explanation
Indices: 15885359--15885386 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15885349 AGAAACTTAG
15885359 GGAAAATTCAAGGA
1 GGAAAATTCAAGGA
15885373 GGAAAATTCAAGGA
1 GGAAAATTCAAGGA
15885387 TCAAAGTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.29, T:0.14
Consensus pattern (14 bp):
GGAAAATTCAAGGA
Found at i:15887921 original size:49 final size:49
Alignment explanation
Indices: 15887832--15887926 Score: 122
Period size: 49 Copynumber: 1.9 Consensus size: 49
15887822 CAATTACAGT
* * *
15887832 TACATGGCACTAAATGTGTCATACAGATACATGAAGTTATTGTACTACA
1 TACATAGCACTAAATGTGTCATACAGATACAGGAAGTTATTATACTACA
*
15887881 TACATAGCACTAAATGT-TACATACAGATATAGGCAA-TTATTATACT
1 TACATAGCACTAAATGTGT-CATACAGATACAGG-AAGTTATTATACT
15887927 CTCTAAATGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
48 1 0.03
49 37 0.93
50 2 0.05
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (49 bp):
TACATAGCACTAAATGTGTCATACAGATACAGGAAGTTATTATACTACA
Found at i:15888631 original size:37 final size:37
Alignment explanation
Indices: 15888590--15888675 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
15888580 AGTTGATATG
*
15888590 AGATATCAAAAATTATTCGTTAATTATAGTCGACTCT
1 AGATATCAAAAATTATTCATTAATTATAGTCGACTCT
* *
15888627 AGATATAAAAAATTATTCATTAATTATAGTCTACTCT
1 AGATATCAAAAATTATTCATTAATTATAGTCGACTCT
15888664 AGATATCAAAAA
1 AGATATCAAAAA
15888676 GCAATAGATG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36
Consensus pattern (37 bp):
AGATATCAAAAATTATTCATTAATTATAGTCGACTCT
Found at i:15889166 original size:77 final size:79
Alignment explanation
Indices: 15889028--15889179 Score: 211
Period size: 77 Copynumber: 1.9 Consensus size: 79
15889018 TTGTAAGTAA
* * * *
15889028 ACATTAAAAGAATGTAATTTCGATTACAACTCTTTTAGTGGATATTTAATTTGGAATAATTAAAT
1 ACATTAAAAGAATGTAATTTAGATTACAACTCTCTTAATGGATATTTAATGTGGAATAATTAAAT
15889093 AATAGTTTAAATAT
66 AATAGTTTAAATAT
* * *
15889107 ACATT-AAAGAGTGTAATTTAGATTATAATTC-CTTAATGGATATTTAATGT-GAATTAATTAAA
1 ACATTAAAAGAATGTAATTTAGATTACAACTCTCTTAATGGATATTTAATGTGGAA-TAATTAAA
15889169 TAATAGTTTAA
65 TAATAGTTTAA
15889180 TTAATATGAA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
76 3 0.05
77 35 0.54
78 22 0.34
79 5 0.08
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.41
Consensus pattern (79 bp):
ACATTAAAAGAATGTAATTTAGATTACAACTCTCTTAATGGATATTTAATGTGGAATAATTAAAT
AATAGTTTAAATAT
Found at i:15892695 original size:46 final size:46
Alignment explanation
Indices: 15892628--15892917 Score: 357
Period size: 46 Copynumber: 6.3 Consensus size: 46
15892618 AAAATGAATG
*
15892628 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGT
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
* *
15892674 CATAAATAAAAATGCATAACGGTGCATTATAGGCATGAAAGAATGC
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
** * * * *
15892720 CATAAATGAAAAAACATAATGGTGTATTATCA-ACATGAAAGGATAC
1 CATAAATGAAAATGCATAACGGTGCATTAT-AGGCATGAAAGGATGC
* * * *
15892766 CATAAATGAAAATGCATAACGGTGCATTATCGGCATAAAAAAGATGT
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCAT-GAAAGGATGC
* ** *
15892813 CATAAAGGAAAATGCATAACCCTGCATTATAGGCATGAAATGATGC
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
* ** *
15892859 CATAAAGGAAAATGTTTAACGGTGCATTATAGGCATGAAAGAATGC
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
*
15892905 TATAAATGAAAAT
1 CATAAATGAAAAT
15892918 AATGAATAAT
Statistics
Matches: 205, Mismatches: 36, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
46 166 0.81
47 39 0.19
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (46 bp):
CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
Found at i:15892888 original size:139 final size:138
Alignment explanation
Indices: 15892628--15892917 Score: 377
Period size: 139 Copynumber: 2.1 Consensus size: 138
15892618 AAAATGAATG
* * *
15892628 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGTCATAAATAAAAATGCATAA
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCATAAAAAGATGTCATAAAGAAAAATGCATAA
** * * *
15892693 CGGTGCATTATAGGCATGAAAGAATGCCATAAATGAAAAAACATAATGGTGTATTATCA-ACATG
66 CCCTGCATTATAGGCATGAAAGAATGCCATAAAGGAAAAAACATAACGGTGCATTAT-AGACATG
*
15892757 AAAGGATAC
130 AAAGAATAC
* *
15892766 CATAAATGAAAATGCATAACGGTGCATTATCGGCATAAAAAAGATGTCATAAAGGAAAATGCATA
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCAT-AAAAAGATGTCATAAAGAAAAATGCATA
**** *
15892831 ACCCTGCATTATAGGCATGAAATG-ATGCCATAAAGGAAAATGTTTAACGGTGCATTATAGGCAT
65 ACCCTGCATTATAGGCATGAAA-GAATGCCATAAAGGAAAAAACATAACGGTGCATTATAGACAT
*
15892895 GAAAGAATGC
129 GAAAGAATAC
*
15892905 TATAAATGAAAAT
1 CATAAATGAAAAT
15892918 AATGAATAAT
Statistics
Matches: 131, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
138 36 0.27
139 94 0.72
140 1 0.01
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (138 bp):
CATAAATGAAAATGCATAACGGTGCATTATAGGCATAAAAAGATGTCATAAAGAAAAATGCATAA
CCCTGCATTATAGGCATGAAAGAATGCCATAAAGGAAAAAACATAACGGTGCATTATAGACATGA
AAGAATAC
Found at i:15899538 original size:46 final size:46
Alignment explanation
Indices: 15899488--15899729 Score: 290
Period size: 46 Copynumber: 5.3 Consensus size: 46
15899478 AAAATCAATG
** *
15899488 CATAAATGAAAATGCATAATAGTGCATTATAGGCATAAAAGGATGC
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
* *
15899534 CATAAATGAAAATGCATAATGGTGCATTATAGGCAAGAAAGGATGC
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
* * *
15899580 CATAAATAAAAATGCATAACGGTGCATTATCA-ACATGAAATGATGC
1 CATAAATGAAAATGCATAACGGTGCATTAT-AGGCATGAAAGGATGC
** * ** *
15899626 TGTAAAGGAAAATGCATAACAATGCATTATAAGCATGAAAGGATGC
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
* * * *
15899672 CATAAA-AAAAATACATAACGGTGTATTATAGGCATGAAAGGATGA
1 CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
*
15899717 TATAAATGAAAAT
1 CATAAATGAAAAT
15899730 AAAGAATAAT
Statistics
Matches: 166, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
45 38 0.23
46 127 0.77
47 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (46 bp):
CATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGC
Found at i:15912026 original size:21 final size:21
Alignment explanation
Indices: 15912000--15912042 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
15911990 CCATATTAAG
15912000 ATAGTTCTAATTTAATATTAC
1 ATAGTTCTAATTTAATATTAC
15912021 ATAGTTCTAATTTAATATTAC
1 ATAGTTCTAATTTAATATTAC
15912042 A
1 A
15912043 AAATCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.47
Consensus pattern (21 bp):
ATAGTTCTAATTTAATATTAC
Found at i:15915931 original size:114 final size:114
Alignment explanation
Indices: 15915721--15915949 Score: 413
Period size: 114 Copynumber: 2.0 Consensus size: 114
15915711 TGCGTAGTTC
* *
15915721 TCATGGAGGAGAAACAACCTATATATTACTTTAGTGAGAAATTAAAAATTTGCACAACTAAATTA
1 TCATAGAGGAGAAACAACCTATATATTACTTTAGTGAGAAATTAAAAAGTTGCACAACTAAATTA
*
15915786 CTCCTCATATGATAAAGAAATTCATGAATTAGTTTGAGCACTCGAAGTG
66 CTCCTAATATGATAAAGAAATTCATGAATTAGTTTGAGCACTCGAAGTG
15915835 TCATAGAGGAGAAACAACCTATATATTACTTTAGTGAGAAATTAAAAAGTTGCACAACTAAATTA
1 TCATAGAGGAGAAACAACCTATATATTACTTTAGTGAGAAATTAAAAAGTTGCACAACTAAATTA
* *
15915900 CTCCTAATATGATAAAGAAATTCATGCATTAGTTTTAGCACTCGAAGTG
66 CTCCTAATATGATAAAGAAATTCATGAATTAGTTTGAGCACTCGAAGTG
15915949 T
1 T
15915950 AACAACACTA
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (114 bp):
TCATAGAGGAGAAACAACCTATATATTACTTTAGTGAGAAATTAAAAAGTTGCACAACTAAATTA
CTCCTAATATGATAAAGAAATTCATGAATTAGTTTGAGCACTCGAAGTG
Found at i:15919125 original size:24 final size:24
Alignment explanation
Indices: 15919093--15919138 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15919083 AACAAAGAGA
*
15919093 AAAAGAAAATCAAATCAAACAAAT
1 AAAAGAAAATAAAATCAAACAAAT
* *
15919117 AAAATAAAATAAAATTAAACAA
1 AAAAGAAAATAAAATCAAACAA
15919139 GACTTAAGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.74, C:0.09, G:0.02, T:0.15
Consensus pattern (24 bp):
AAAAGAAAATAAAATCAAACAAAT
Found at i:15923990 original size:18 final size:18
Alignment explanation
Indices: 15923969--15924010 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
15923959 CCGACCCGTT
*
15923969 AACCCGACCCGTTGACCC
1 AACCCGACCCATTGACCC
15923987 AACCCGACCCATTGACCC
1 AACCCGACCCATTGACCC
*
15924005 GACCCG
1 AACCCG
15924011 TTGACCCGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.24, C:0.50, G:0.17, T:0.10
Consensus pattern (18 bp):
AACCCGACCCATTGACCC
Found at i:15923992 original size:31 final size:31
Alignment explanation
Indices: 15923952--15924023 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
15923942 ACCGGTCACA
*
15923952 ACCCGACCCGACCCGTTAACCCGACCCGTTG
1 ACCCGACCCGACCCATTAACCCGACCCGTTG
* *
15923983 ACCCAACCCGACCCATTGACCCGACCCGTTG
1 ACCCGACCCGACCCATTAACCCGACCCGTTG
15924014 ACCCGACCCG
1 ACCCGACCCG
15924024 TTGACCGTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.21, C:0.50, G:0.18, T:0.11
Consensus pattern (31 bp):
ACCCGACCCGACCCATTAACCCGACCCGTTG
Found at i:15924016 original size:8 final size:8
Alignment explanation
Indices: 15924005--15924051 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
15923995 CCATTGACCC
15924005 GACCCGTT
1 GACCCGTT
15924013 GACCC---
1 GACCCGTT
15924018 GACCCGTT
1 GACCCGTT
15924026 GA-CCGTT
1 GACCCGTT
15924033 GACCCGTT
1 GACCCGTT
15924041 GA-CCGTT
1 GACCCGTT
15924048 GACC
1 GACC
15924052 GGAATTGACC
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
5 5 0.15
7 14 0.41
8 15 0.44
ACGTcount: A:0.15, C:0.38, G:0.26, T:0.21
Consensus pattern (8 bp):
GACCCGTT
Found at i:15924023 original size:18 final size:18
Alignment explanation
Indices: 15923952--15924010 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
15923942 ACCGGTCACA
15923952 ACCCGACCCGACCCGTT-
1 ACCCGACCCGACCCGTTG
15923969 A----ACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
* *
15923983 ACCCAACCCGACCCATTG
1 ACCCGACCCGACCCGTTG
15924001 ACCCGACCCG
1 ACCCGACCCG
15924011 TTGACCCGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
13 12 0.34
14 1 0.03
17 1 0.03
18 21 0.60
ACGTcount: A:0.22, C:0.51, G:0.17, T:0.10
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:15924026 original size:13 final size:13
Alignment explanation
Indices: 15923956--15924044 Score: 88
Period size: 13 Copynumber: 6.3 Consensus size: 13
15923946 GTCACAACCC
15923956 GACCCGACCCGTT
1 GACCCGACCCGTT
*
15923969 AACCCGACCCGTT
1 GACCCGACCCGTT
*
15923982 GACCCAACCCGACCCATT
1 G-----ACCCGACCCGTT
15924000 GACCCGACCCGTT
1 GACCCGACCCGTT
15924013 GACCCGACCCGTT
1 GACCCGACCCGTT
*
15924026 GACCGTTGACCCGTT
1 GACC--CGACCCGTT
15924041 GACC
1 GACC
15924045 GTTGACCGGA
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
13 40 0.62
15 12 0.19
18 12 0.19
ACGTcount: A:0.19, C:0.45, G:0.20, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:15924033 original size:7 final size:7
Alignment explanation
Indices: 15924021--15924052 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
15924011 TTGACCCGAC
15924021 CCGTTGA
1 CCGTTGA
15924028 CCGTTGA
1 CCGTTGA
15924035 CCCGTTGA
1 -CCGTTGA
15924043 CCGTTGA
1 CCGTTGA
15924050 CCG
1 CCG
15924053 GAATTGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.12, C:0.34, G:0.28, T:0.25
Consensus pattern (7 bp):
CCGTTGA
Found at i:15924038 original size:15 final size:15
Alignment explanation
Indices: 15924005--15924051 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
15923995 CCATTGACCC
*
15924005 GACCCGTTGACC--C
1 GACCCGTTGACCGTT
15924018 GACCCGTTGACCGTT
1 GACCCGTTGACCGTT
15924033 GACCCGTTGACCGTT
1 GACCCGTTGACCGTT
15924048 GACC
1 GACC
15924052 GGAATTGACC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 12 0.39
15 19 0.61
ACGTcount: A:0.15, C:0.38, G:0.26, T:0.21
Consensus pattern (15 bp):
GACCCGTTGACCGTT
Found at i:15925050 original size:63 final size:63
Alignment explanation
Indices: 15924972--15925094 Score: 237
Period size: 63 Copynumber: 2.0 Consensus size: 63
15924962 TAATCCTAGG
*
15924972 AGAGTTTGTGAAGGATACTAGAAGTTTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
1 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
15925035 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTT
1 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTT
15925095 TAAGAAAGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (63 bp):
AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
Found at i:15925098 original size:31 final size:31
Alignment explanation
Indices: 15925000--15925099 Score: 77
Period size: 31 Copynumber: 3.2 Consensus size: 31
15924990 TAGAAGTTTG
15925000 TTAAGAGAACCGTTTCAAGATCAGAGAGTG-
1 TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
* *
15925030 TT-AGA-AGA--GTTTGTGAAGGATACTAGA-AGTCT
1 TTAAGAGA-ACCG-TT-TCAA-GAT-C-AGAGAGTGT
15925062 GTTAAGAGAACCGTTTCAAGATCAGAGAGTGT
1 -TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
15925094 TTAAGA
1 TTAAGA
15925100 AAGCAATTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 25
0.65 0.05 0.30
Matches are distributed among these distances:
27 1 0.02
28 3 0.06
29 7 0.13
30 5 0.09
31 13 0.25
32 8 0.15
33 5 0.09
34 7 0.13
35 3 0.06
36 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (31 bp):
TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
Found at i:15926686 original size:12 final size:12
Alignment explanation
Indices: 15926671--15926740 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
15926661 GATAAATGAC
15926671 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
15926683 CTGATTTCTGAT
1 CTGAATTCTGTT
*
15926695 CTGGATTCTGTT
1 CTGAATTCTGTT
15926707 CTG-ATATCTGTT
1 CTGAAT-TCTGTT
15926719 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
15926731 TTGATTTCTG
1 CTGAATTCTG
15926741 ATATCTTCGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
11 2 0.04
12 45 0.92
13 2 0.04
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.51
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:15926690 original size:48 final size:48
Alignment explanation
Indices: 15926634--15926742 Score: 148
Period size: 48 Copynumber: 2.3 Consensus size: 48
15926624 AAATATTTTA
15926634 TCTGATTTCTGA-CTTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGTTCTGATAAATGACCTGAATTCTGT
* ** **
15926682 TCTGATTTCTGATCTGGATTCTGTTCTGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
*
15926730 TTTGATTTCTGAT
1 TCTGATTTCTGAT
15926743 ATCTTCGTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 53 0.98
49 1 0.02
ACGTcount: A:0.18, C:0.16, G:0.17, T:0.49
Consensus pattern (48 bp):
TCTGATTTCTGATCTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
Found at i:15926702 original size:24 final size:24
Alignment explanation
Indices: 15926634--15926742 Score: 130
Period size: 24 Copynumber: 4.5 Consensus size: 24
15926624 AAATATTTTA
15926634 TCTGATTTCTGA-CTTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGT
*** *
15926658 TCTGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
*
15926682 TCTGATTTCTGATCTGGATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
* *
15926706 TCTGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
*
15926730 TTTGATTTCTGAT
1 TCTGATTTCTGAT
15926743 ATCTTCGTTT
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
24 69 0.99
25 1 0.01
ACGTcount: A:0.18, C:0.16, G:0.17, T:0.49
Consensus pattern (24 bp):
TCTGATTTCTGATCTGAATTCTGT
Found at i:15928843 original size:18 final size:18
Alignment explanation
Indices: 15928822--15928863 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
15928812 CCGACCCGTT
15928822 AACCCGACCCGTTGACCC
1 AACCCGACCCGTTGACCC
15928840 AACCCGACCCGTTGACCC
1 AACCCGACCCGTTGACCC
*
15928858 GACCCG
1 AACCCG
15928864 TTGACCCGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.50, G:0.19, T:0.10
Consensus pattern (18 bp):
AACCCGACCCGTTGACCC
Found at i:15928845 original size:31 final size:31
Alignment explanation
Indices: 15928805--15928876 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
15928795 ACCGGTCACA
15928805 ACCCGACCCGACCCGTTAACCCGACCCGTTG
1 ACCCGACCCGACCCGTTAACCCGACCCGTTG
* *
15928836 ACCCAACCCGACCCGTTGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTAACCCGACCCGTTG
15928867 ACCCGACCCG
1 ACCCGACCCG
15928877 TTGACCGTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.19, C:0.50, G:0.19, T:0.11
Consensus pattern (31 bp):
ACCCGACCCGACCCGTTAACCCGACCCGTTG
Found at i:15928876 original size:18 final size:18
Alignment explanation
Indices: 15928805--15928863 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
15928795 ACCGGTCACA
15928805 ACCCGACCCGACCCGTT-
1 ACCCGACCCGACCCGTTG
15928822 A----ACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
15928836 ACCCAACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
15928854 ACCCGACCCG
1 ACCCGACCCG
15928864 TTGACCCGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 12 0.33
14 1 0.03
17 1 0.03
18 22 0.61
ACGTcount: A:0.20, C:0.51, G:0.19, T:0.10
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:15928879 original size:13 final size:13
Alignment explanation
Indices: 15928809--15928882 Score: 94
Period size: 13 Copynumber: 5.3 Consensus size: 13
15928799 GTCACAACCC
15928809 GACCCGACCCGTT
1 GACCCGACCCGTT
*
15928822 AACCCGACCCGTT
1 GACCCGACCCGTT
15928835 GACCCAACCCGACCCGTT
1 G-----ACCCGACCCGTT
15928853 GACCCGACCCGTT
1 GACCCGACCCGTT
15928866 GACCCGACCCGTT
1 GACCCGACCCGTT
15928879 GACC
1 GACC
15928883 GTTGACCGTT
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
13 41 0.76
18 13 0.24
ACGTcount: A:0.19, C:0.47, G:0.20, T:0.14
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:15928886 original size:7 final size:7
Alignment explanation
Indices: 15928874--15928904 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
15928864 TTGACCCGAC
15928874 CCGTTGA
1 CCGTTGA
15928881 CCGTTGA
1 CCGTTGA
15928888 CCGTTGA
1 CCGTTGA
15928895 CCGTTGA
1 CCGTTGA
15928902 CCG
1 CCG
15928905 GAATTGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.32, G:0.29, T:0.26
Consensus pattern (7 bp):
CCGTTGA
Found at i:15929901 original size:63 final size:63
Alignment explanation
Indices: 15929823--15929945 Score: 237
Period size: 63 Copynumber: 2.0 Consensus size: 63
15929813 TAATCCTAGG
*
15929823 AGAGTTTGTGAAGGATACTAGAAGTTTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
1 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
15929886 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTT
1 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTT
15929946 TAAGAAAGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (63 bp):
AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
Found at i:15929949 original size:31 final size:31
Alignment explanation
Indices: 15929851--15929950 Score: 77
Period size: 31 Copynumber: 3.2 Consensus size: 31
15929841 TAGAAGTTTG
15929851 TTAAGAGAACCGTTTCAAGATCAGAGAGTG-
1 TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
* *
15929881 TT-AGA-AGA--GTTTGTGAAGGATACTAGA-AGTCT
1 TTAAGAGA-ACCG-TT-TCAA-GAT-C-AGAGAGTGT
15929913 GTTAAGAGAACCGTTTCAAGATCAGAGAGTGT
1 -TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
15929945 TTAAGA
1 TTAAGA
15929951 AAGCAATTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 25
0.65 0.05 0.30
Matches are distributed among these distances:
27 1 0.02
28 3 0.06
29 7 0.13
30 5 0.09
31 13 0.25
32 8 0.15
33 5 0.09
34 7 0.13
35 3 0.06
36 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (31 bp):
TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
Found at i:15931537 original size:12 final size:12
Alignment explanation
Indices: 15931522--15931591 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
15931512 GATAAATGAC
15931522 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
15931534 CTGATTTCTGAT
1 CTGAATTCTGTT
*
15931546 CTGGATTCTGTT
1 CTGAATTCTGTT
15931558 CTG-ATATCTGTT
1 CTGAAT-TCTGTT
15931570 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
15931582 TTGATTTCTG
1 CTGAATTCTG
15931592 ATATCTTCGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
11 2 0.04
12 45 0.92
13 2 0.04
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.51
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:15931541 original size:48 final size:48
Alignment explanation
Indices: 15931485--15931593 Score: 148
Period size: 48 Copynumber: 2.3 Consensus size: 48
15931475 AAATATTTTA
15931485 TCTGATTTCTGA-CTTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGTTCTGATAAATGACCTGAATTCTGT
* ** **
15931533 TCTGATTTCTGATCTGGATTCTGTTCTGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
*
15931581 TTTGATTTCTGAT
1 TCTGATTTCTGAT
15931594 ATCTTCGTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 53 0.98
49 1 0.02
ACGTcount: A:0.18, C:0.16, G:0.17, T:0.49
Consensus pattern (48 bp):
TCTGATTTCTGATCTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
Found at i:15931553 original size:24 final size:24
Alignment explanation
Indices: 15931485--15931593 Score: 130
Period size: 24 Copynumber: 4.5 Consensus size: 24
15931475 AAATATTTTA
15931485 TCTGATTTCTGA-CTTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGT
*** *
15931509 TCTGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
*
15931533 TCTGATTTCTGATCTGGATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
* *
15931557 TCTGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
*
15931581 TTTGATTTCTGAT
1 TCTGATTTCTGAT
15931594 ATCTTCGTTT
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
24 69 0.99
25 1 0.01
ACGTcount: A:0.18, C:0.16, G:0.17, T:0.49
Consensus pattern (24 bp):
TCTGATTTCTGATCTGAATTCTGT
Found at i:15942031 original size:17 final size:18
Alignment explanation
Indices: 15941995--15942032 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
15941985 ACTATTCCCT
*
15941995 AAATTAAAGGCCTAATGTG
1 AAATTAAA-GCCTAAAGTG
15942014 AAATTAAA-CCTAAAGTG
1 AAATTAAAGCCTAAAGTG
15942031 AA
1 AA
15942033 GGCTCTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
19 8 0.44
ACGTcount: A:0.50, C:0.11, G:0.16, T:0.24
Consensus pattern (18 bp):
AAATTAAAGCCTAAAGTG
Found at i:15943733 original size:26 final size:28
Alignment explanation
Indices: 15943719--15943823 Score: 76
Period size: 28 Copynumber: 3.8 Consensus size: 28
15943709 CTCAATCATC
15943719 CTAAAGCACAGAGGTGC-CAAATCCTAGA
1 CTAAAGCACAGAGGTGCTC-AATCCTAGA
*
15943747 TTAAAGCACAGAGGTGCTCAAT--TA-A
1 CTAAAGCACAGAGGTGCTCAATCCTAGA
* * * * *
15943772 TTAAAAACATAGAGGTGC-CAGATTCTAAA
1 CT-AAAGCACAGAGGTGCTCA-ATCCTAGA
* *
15943801 CTGAAGCACAGATGTGCTCAATC
1 CTAAAGCACAGAGGTGCTCAATC
15943824 ATTTTTTACT
Statistics
Matches: 61, Mismatches: 9, Indels: 14
0.73 0.11 0.17
Matches are distributed among these distances:
25 5 0.08
26 17 0.28
28 34 0.56
29 5 0.08
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (28 bp):
CTAAAGCACAGAGGTGCTCAATCCTAGA
Found at i:15943762 original size:54 final size:53
Alignment explanation
Indices: 15943695--15943826 Score: 131
Period size: 54 Copynumber: 2.5 Consensus size: 53
15943685 ATTGTTTGTA
* * * * *
15943695 AAAGAACATAGGTGCTCAATCATCCT-AAAGCACAGAGGTGCCAAATCCTAGATT
1 AAAGCACAGAGGTGCTCAATCAT--TAAAAACACAGAGGTGCCAAATCCTAAACT
* * * *
15943749 AAAGCACAGAGGTGCTCAATTAATTAAAAACATAGAGGTGCCAGATTCTAAACT
1 AAAGCACAGAGGTGCTCAA-TCATTAAAAACACAGAGGTGCCAAATCCTAAACT
* *
15943803 GAAGCACAGATGTGCTCAATCATT
1 AAAGCACAGAGGTGCTCAATCATT
15943827 TTTTACTGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
53 5 0.08
54 56 0.88
55 3 0.05
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (53 bp):
AAAGCACAGAGGTGCTCAATCATTAAAAACACAGAGGTGCCAAATCCTAAACT
Found at i:15948981 original size:58 final size:58
Alignment explanation
Indices: 15948854--15949482 Score: 945
Period size: 58 Copynumber: 10.8 Consensus size: 58
15948844 CATATTTCCC
* * * * *
15948854 ATACAGAAATTCAGACATTTAGTATGAATCTCTTAACTTTTTTGCGCACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAAC-TTTTTGCACACAAAGTGCCCA
*
15948913 ATACGGAAATTCATACACTTAGTATGAATTTCTTATCTTTTTGCACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
* * *
15948971 ATACGAAAATTCGTACACTTAGTATGAATTTCTTAACTTTTTGCAAACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
* * *
15949029 ATACGGAAATTCATACATTTAGTATGAATTTCTTCACTTTTTGCACACAAAGTGCCTA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
** * *
15949087 ATACAAAAATTCATACACTTAGTATGAATTTCTTCACTTTTTTCACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
* *
15949145 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACGCAAAATGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
* *
15949203 ATAC-GATAATTCATACACTTTGTATGAATATCTTAACTTTTTGCACACAAAGTGCCCA
1 ATACGGA-AATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
*
15949261 ATATGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
* * * *
15949319 AAAAGGAAATTCATACACCTAGTATGAATTTCTTAACTTGTTGCACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
* * *
15949377 TTATGGAAATTCATACACTTAGTATGAATTTCGTAACTTTTTGCACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
* * * *
15949435 ATATGGAAATTTATACACATAGTATAAATTTCTTAACTTTTTGCACAC
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACAC
15949483 TTAGTACCAT
Statistics
Matches: 519, Mismatches: 49, Indels: 5
0.91 0.09 0.01
Matches are distributed among these distances:
57 2 0.00
58 483 0.93
59 34 0.07
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.34
Consensus pattern (58 bp):
ATACGGAAATTCATACACTTAGTATGAATTTCTTAACTTTTTGCACACAAAGTGCCCA
Found at i:15949880 original size:19 final size:20
Alignment explanation
Indices: 15949810--15949881 Score: 62
Period size: 19 Copynumber: 3.6 Consensus size: 20
15949800 TGGTTCTTTA
*
15949810 GTATCG-ATACTCTTACCATG
1 GTATCGAATAC-CTTACTATG
*
15949830 GTATCGATACTACCATACTATG
1 GTATCGA-A-TACCTTACTATG
15949852 GT-TCTG-ATACCTTACTATG
1 GTATC-GAATACCTTACTATG
15949871 GTATC-AATACC
1 GTATCGAATACC
15949882 ATATTTGCAT
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
19 18 0.42
20 9 0.21
21 2 0.05
22 11 0.26
23 3 0.07
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.35
Consensus pattern (20 bp):
GTATCGAATACCTTACTATG
Found at i:15955628 original size:46 final size:46
Alignment explanation
Indices: 15955556--15955681 Score: 186
Period size: 46 Copynumber: 2.8 Consensus size: 46
15955546 TATAAAATGT
*
15955556 CTTACCATTTA-TCCAATAAGCTCGTAATCTTATTTTACCAAAATA
1 CTTACCATTTATTCCCATAAGCTCGTAATCTTATTTTACCAAAATA
* *
15955601 CTTACCATTTATTCCCATAAGCCCGTAAGT-TTATTTTACCAATATA
1 CTTACCATTTATTCCCATAAGCTCGTAA-TCTTATTTTACCAAAATA
*
15955647 CTTACCATTTATT-CCATAAGCTCGTAAACTTATTT
1 CTTACCATTTATTCCCATAAGCTCGTAATCTTATTT
15955682 GCATGCTTAC
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
45 30 0.41
46 42 0.58
47 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.40
Consensus pattern (46 bp):
CTTACCATTTATTCCCATAAGCTCGTAATCTTATTTTACCAAAATA
Found at i:15955846 original size:40 final size:40
Alignment explanation
Indices: 15955786--15955947 Score: 243
Period size: 40 Copynumber: 4.0 Consensus size: 40
15955776 ACCGTAGTGC
* ** * *
15955786 TACACATAAGGTCGAACCCACCATATACACCAAAGAGTAT
1 TACACATAAGGTAGTGCCCACCATATACACCGAAGTGTAT
*
15955826 TACACATATGGTAGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTAGTGCCCACCATATACACCGAAGTGTAT
*
15955866 TACACATAAGGTTGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTAGTGCCCACCATATACACCGAAGTGTAT
* *
15955906 TACACATAAGGTCGTGCCCACCATGTACACCGAAGTGTAT
1 TACACATAAGGTAGTGCCCACCATATACACCGAAGTGTAT
15955946 TA
1 TA
15955948 TAAACCTGTA
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 112 1.00
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTAGTGCCCACCATATACACCGAAGTGTAT
Found at i:15960570 original size:59 final size:57
Alignment explanation
Indices: 15960420--15960638 Score: 174
Period size: 57 Copynumber: 3.8 Consensus size: 57
15960410 CAAGTCATTA
* * * * ** *
15960420 TTGTAATTTATTAGAAGTTTT-TTCTTTGATTGTAATTTATAAAAACAATTGGAATTTG
1 TTGTAATTTATAAAAAGTTTTGGTATTT-ATTGTAATTTATAAAAA-GTTTGGCATTTG
*** * * ****
15960478 TTGTAATTTATAAAAACAATT-GTAATTAGTTGTAATTTTTAATTTTTTTTTGGCATTTG
1 TTGTAATTTATAAAAAGTTTTGGTATTTA-TTGTAATTTATAA--AAAGTTTGGCATTTG
*
15960537 TTGTAATTTATAAAAAGTTTTGGTATTTTTTGTAATTTATAAAAAGTTTGGCATTTG
1 TTGTAATTTATAAAAAGTTTTGGTATTTATTGTAATTTATAAAAAGTTTGGCATTTG
* * * *
15960594 TTTGTACTTTAT-AAAAGTTTTGGTCTTTATTGTAATATATCAAAA
1 -TTGTAATTTATAAAAAGTTTTGGTATTTATTGTAATTTATAAAAA
15960639 TATTATTTTT
Statistics
Matches: 126, Mismatches: 30, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
57 41 0.33
58 41 0.33
59 39 0.31
60 5 0.04
ACGTcount: A:0.32, C:0.04, G:0.13, T:0.51
Consensus pattern (57 bp):
TTGTAATTTATAAAAAGTTTTGGTATTTATTGTAATTTATAAAAAGTTTGGCATTTG
Found at i:15960615 original size:29 final size:30
Alignment explanation
Indices: 15960420--15960616 Score: 138
Period size: 29 Copynumber: 6.8 Consensus size: 30
15960410 CAAGTCATTA
* * ** *
15960420 TTGTAATTTATTAGAAGTTTTTTC-TTTGA
1 TTGTAATTTATAAAAAGTTTTGGCATTTGT
*** *
15960449 TTGTAATTTATAAAAACAATTGGAATTTG-
1 TTGTAATTTATAAAAAGTTTTGGCATTTGT
*** ** *
15960478 TTGTAATTTATAAAAACAATTGTAATTAG-
1 TTGTAATTTATAAAAAGTTTTGGCATTTGT
* ****
15960507 TTGTAATTTTTAATTTTTTTTTGGCATTTG-
1 TTGTAATTTATAA-AAAGTTTTGGCATTTGT
*
15960537 TTGTAATTTATAAAAAGTTTTGGTATTT-T
1 TTGTAATTTATAAAAAGTTTTGGCATTTGT
15960566 TTGTAATTTATAAAAAG-TTTGGCATTTGT
1 TTGTAATTTATAAAAAGTTTTGGCATTTGT
*
15960595 TTGTACTTTAT-AAAAGTTTTGG
1 TTGTAATTTATAAAAAGTTTTGG
15960617 TCTTTATTGT
Statistics
Matches: 135, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
28 14 0.10
29 98 0.73
30 23 0.17
ACGTcount: A:0.31, C:0.03, G:0.14, T:0.52
Consensus pattern (30 bp):
TTGTAATTTATAAAAAGTTTTGGCATTTGT
Found at i:15960638 original size:29 final size:29
Alignment explanation
Indices: 15960537--15960638 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
15960527 TTGGCATTTG
*
15960537 TTGTAATTTATAAAAAGTTTTGGTATTTT
1 TTGTAATTTATAAAAAGTTTTGGTCTTTT
15960566 TTGTAATTTATAAAAAG-TTTGG-CATTTGT
1 TTGTAATTTATAAAAAGTTTTGGTC-TTT-T
* *
15960595 TTGTACTTTAT-AAAAGTTTTGGTCTTTA
1 TTGTAATTTATAAAAAGTTTTGGTCTTTT
* *
15960623 TTGTAATATATCAAAA
1 TTGTAATTTATAAAAA
15960639 TATTATTTTT
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
28 22 0.35
29 40 0.63
30 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.14, T:0.50
Consensus pattern (29 bp):
TTGTAATTTATAAAAAGTTTTGGTCTTTT
Found at i:15970426 original size:22 final size:22
Alignment explanation
Indices: 15970401--15970449 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
15970391 TCATTAGATT
15970401 TTAAACCTGTTTAATCCAATTC
1 TTAAACCTGTTTAATCCAATTC
*
15970423 TTAAACCTGTTTAATTCAATTC
1 TTAAACCTGTTTAATCCAATTC
15970445 TTAAA
1 TTAAA
15970450 GCTGATATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.43
Consensus pattern (22 bp):
TTAAACCTGTTTAATCCAATTC
Found at i:15975592 original size:21 final size:21
Alignment explanation
Indices: 15975563--15975605 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
15975553 ATTTAAAATA
*
15975563 TGTATCGATGCACTGCTACAG
1 TGTACCGATGCACTGCTACAG
*
15975584 TGTACCGATGCGCTGCTACAG
1 TGTACCGATGCACTGCTACAG
15975605 T
1 T
15975606 AATTTCAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.28
Consensus pattern (21 bp):
TGTACCGATGCACTGCTACAG
Found at i:15976052 original size:24 final size:24
Alignment explanation
Indices: 15976025--15976100 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
15976015 GCTCGCAATC
15976025 TTATTTTACCAAAATACTTACCAT
1 TTATTTTACCAAAATACTTACCAT
* * * ** *
15976049 TTA--TTCCCATAA-GCTTATAAGC
1 TTATTTTACCAAAATACTTACCA-T
*
15976071 TTATTTTACCAATATACTTACCAT
1 TTATTTTACCAAAATACTTACCAT
15976095 TTATTT
1 TTATTT
15976101 CATAAGCTCG
Statistics
Matches: 35, Mismatches: 13, Indels: 8
0.62 0.23 0.14
Matches are distributed among these distances:
21 5 0.14
22 10 0.29
24 15 0.43
25 5 0.14
ACGTcount: A:0.33, C:0.20, G:0.03, T:0.45
Consensus pattern (24 bp):
TTATTTTACCAAAATACTTACCAT
Found at i:15976059 original size:46 final size:46
Alignment explanation
Indices: 15975996--15976118 Score: 169
Period size: 46 Copynumber: 2.7 Consensus size: 46
15975986 TATAAAATTT
*
15975996 CTTACCATTTA-TCCCATAAGCTCGCAATCTTATTTTACCAAAATA
1 CTTACCATTTATTCCCATAAGCTCGCAAGCTTATTTTACCAAAATA
*** *
15976041 CTTACCATTTATTCCCATAAGCTTATAAGCTTATTTTACCAATATA
1 CTTACCATTTATTCCCATAAGCTCGCAAGCTTATTTTACCAAAATA
* *
15976087 CTTACCATTTATT-TCATAAGCTCGTAAGCTTA
1 CTTACCATTTATTCCCATAAGCTCGCAAGCTTA
15976119 GTTGCATGCT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 27 0.39
46 42 0.61
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.39
Consensus pattern (46 bp):
CTTACCATTTATTCCCATAAGCTCGCAAGCTTATTTTACCAAAATA
Found at i:15976274 original size:40 final size:40
Alignment explanation
Indices: 15976225--15976386 Score: 243
Period size: 40 Copynumber: 4.0 Consensus size: 40
15976215 ACCGTAGTGC
* ** *
15976225 TACATATAAGGTATTGCCCACCATATACATCAAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
* * *
15976265 TACACATAAGGTTGTGCCCACCATATACACCGAAGTGCAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
15976305 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
* *
15976345 TACACATAAGGTCGTGCCCACTATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
15976385 TA
1 TA
15976387 TAAACATGCA
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
Done.