Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20687664
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 81 of 91
Found at i:18394634 original size:18 final size:18
Alignment explanation
Indices: 18394611--18394655 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
18394601 TGATCGTACT
18394611 CTTGATTCTTTACATTTG
1 CTTGATTCTTTACATTTG
18394629 CTTGATTCTTTACATTTG
1 CTTGATTCTTTACATTTG
*
18394647 CATGATTCT
1 CTTGATTCT
18394656 GTTATAATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.53
Consensus pattern (18 bp):
CTTGATTCTTTACATTTG
Found at i:18395147 original size:126 final size:126
Alignment explanation
Indices: 18394919--18395173 Score: 429
Period size: 126 Copynumber: 2.0 Consensus size: 126
18394909 AGGTTTTTGA
* *
18394919 TAGCATCAGACATCGTAAGTTTCAGGTTTGCAAGTATATTCTTGATCACACTCTTGATTCTTTAC
1 TAGCATAAGACATCGTAAGTTTCAGGTTTGCAAGTATATTCATGATCACACTCTTGATTCTTTAC
* *
18394984 ATTTGCGTGATTCTGTTATGATGTATTTCTATGCAATTGGTTAGACGTCATATTATGAGAT
66 ATTTGCGTGATTCTGTAATGATGTATTTCGATGCAATTGGTTAGACGTCATATTATGAGAT
18395045 TAGCATAAGACATCGTAAGTTTCAGGTTTGCAAGTATATTCATGATCACACTCTTGATTCTTTAC
1 TAGCATAAGACATCGTAAGTTTCAGGTTTGCAAGTATATTCATGATCACACTCTTGATTCTTTAC
* * * * *
18395110 ATTTGTGTGATTCTGTAATGATGTATTTCGATTCAATTGGTTGGACGTTATATTCTGAGAT
66 ATTTGCGTGATTCTGTAATGATGTATTTCGATGCAATTGGTTAGACGTCATATTATGAGAT
18395171 TAG
1 TAG
18395174 ATATAGTACA
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 120 1.00
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (126 bp):
TAGCATAAGACATCGTAAGTTTCAGGTTTGCAAGTATATTCATGATCACACTCTTGATTCTTTAC
ATTTGCGTGATTCTGTAATGATGTATTTCGATGCAATTGGTTAGACGTCATATTATGAGAT
Found at i:18396785 original size:21 final size:21
Alignment explanation
Indices: 18396761--18396800 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
18396751 GGGAAAATAT
*
18396761 ATTCAAATAGTGCAAAAAAAG
1 ATTCAAACAGTGCAAAAAAAG
* *
18396782 ATTCGAACAGTGCATAAAA
1 ATTCAAACAGTGCAAAAAA
18396801 GAAAACAGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.12, G:0.15, T:0.20
Consensus pattern (21 bp):
ATTCAAACAGTGCAAAAAAAG
Found at i:18401790 original size:30 final size:30
Alignment explanation
Indices: 18401723--18401809 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 30
18401713 ATTTTTTGCT
* * * *
18401723 TTGGTGGCCTTAGTCCCTGTATTATATAACA
1 TTGGTGGCC-AAGTCCATGTACTATTTAACA
** * *
18401754 TTGGTGGTTAATTCCATGTACTATTTAACC
1 TTGGTGGCCAAGTCCATGTACTATTTAACA
*
18401784 TTGGTGGCCAAGTCCTTGTACTATTT
1 TTGGTGGCCAAGTCCATGTACTATTT
18401810 GGTGTTTAGC
Statistics
Matches: 44, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
30 37 0.84
31 7 0.16
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (30 bp):
TTGGTGGCCAAGTCCATGTACTATTTAACA
Found at i:18404961 original size:21 final size:21
Alignment explanation
Indices: 18404937--18404976 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18404927 CAACATTATT
* *
18404937 ACATTATGTCTTGTTGATGCA
1 ACATTATGTCATGTCGATGCA
18404958 ACATTATGTCATGTCGATG
1 ACATTATGTCATGTCGATG
18404977 TAATGCAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (21 bp):
ACATTATGTCATGTCGATGCA
Found at i:18407722 original size:5 final size:5
Alignment explanation
Indices: 18407712--18407750 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
18407702 ATATTCAATA
18407712 AAAAT AAAAT AAAAT AAAAT -AAAT -AAAT -AAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
18407751 TCAAGGGGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 16 0.48
5 17 0.52
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:18407737 original size:4 final size:4
Alignment explanation
Indices: 18407713--18407751 Score: 51
Period size: 4 Copynumber: 9.0 Consensus size: 4
18407703 TATTCAATAA
18407713 AAAT AAAAT AAAAT AAAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT -AAAT -AAAT -AAAT AAAT AAAT AAAT AAAT AAAT
18407752 CAAGGGGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 20 0.59
5 14 0.41
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:18409138 original size:4 final size:4
Alignment explanation
Indices: 18409129--18409155 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
18409119 AAAAAAATAA
18409129 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
18409156 ATGAAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:18409215 original size:2 final size:2
Alignment explanation
Indices: 18409203--18409270 Score: 120
Period size: 2 Copynumber: 34.5 Consensus size: 2
18409193 TTTTAAAAAT
*
18409203 TA TA T- TA TA TA TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18409244 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
18409271 TCGAAAATGT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 62 0.98
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:18409380 original size:36 final size:37
Alignment explanation
Indices: 18409315--18409703 Score: 216
Period size: 36 Copynumber: 10.4 Consensus size: 37
18409305 TTCCAAAACG
*
18409315 TTTTCAAAAATGTTTTTTCCAAAACTATATA-ATATATA
1 TTTTCAAAAAT-TATTTT-CAAAACTATATATATATATA
* *
18409353 TTTTCAAAAATTATCTTCAAAACTATATAATATATAAATG
1 TTTTCAAAAATTATTTTCAAAACTATAT-ATATAT--ATA
* *
18409393 TTTTC-AAAATTGTTTTCAAAACTATATA-ATATGTA
1 TTTTCAAAAATTATTTTCAAAACTATATATATATATA
* **
18409428 TTTTCAAAAATGTTTTTTTTTTTAAACTATATATTATATATA
1 TTTTCAAAAA----TTATTTTCAAAACTATATA-TATATATA
* * *
18409470 TTTTTTAAAAA-TGTTTTCAAAAATTATATATTATATATA
1 -TTTTCAAAAATTATTTTC-AAAACTATATA-TATATATA
* * *
18409509 TTTTTAAAAA--A--ATCAAAAACTATATATTATATATG
1 TTTTCAAAAATTATTTTC-AAAACTATATA-TATATATA
* *
18409544 TTTTCAAAAA-CAATTT-AAAACTATATAATATATATA
1 TTTTCAAAAATTATTTTCAAAACTATAT-ATATATATA
* *** *
18409580 TTTTCGAAAACCGTTTTCAAAACTATATA-ATATACA
1 TTTTCAAAAATTATTTTCAAAACTATATATATATATA
* *
18409616 TTTTCAAAAACCAATT-TTTTCAAAAAGTATATAT-TATATG
1 TTTTC--AAA--AATTATTTTC-AAAACTATATATATATATA
* * * *
18409656 TTTTCAAAAAATGTTTTCTAAAA--A-ATATAAAAATA
1 TTTTCAAAAATTATTTTC-AAAACTATATATATATATA
*
18409691 TTTACAAAAATTA
1 TTTTCAAAAATTA
18409704 ACCTATTTAA
Statistics
Matches: 283, Mismatches: 41, Indels: 57
0.74 0.11 0.15
Matches are distributed among these distances:
34 4 0.01
35 50 0.18
36 56 0.20
37 24 0.08
38 47 0.17
39 43 0.15
40 44 0.16
42 6 0.02
43 9 0.03
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.43
Consensus pattern (37 bp):
TTTTCAAAAATTATTTTCAAAACTATATATATATATA
Found at i:18409442 original size:35 final size:36
Alignment explanation
Indices: 18409315--18409678 Score: 233
Period size: 40 Copynumber: 9.6 Consensus size: 36
18409305 TTCCAAAACG
18409315 TTTTCAAAAATGTTTTTTCCAAAACTATATA-ATATATA
1 TTTTCAAAAATG--TTTT-CAAAACTATATATATATATA
*
18409353 TTTTCAAAAAT-TATCTTCAAAACTATATAATATATAAATG
1 TTTTCAAAAATGT-T-TTCAAAACTATAT-ATATAT--ATA
* *
18409393 TTTTCAAAATTGTTTTCAAAACTATATA-ATATGTA
1 TTTTCAAAAATGTTTTCAAAACTATATATATATATA
**
18409428 TTTTCAAAAATGTTTTTTTTTTTAAACTATATATTATATATA
1 TTTTCAAAAATG-----TTTTCAAAACTATATA-TATATATA
* *
18409470 TTTTTTAAAAATGTTTTCAAAAATTATATATTATATATA
1 -TTTTCAAAAATGTTTTC-AAAACTATATA-TATATATA
* ** *
18409509 TTTTTAAAAA---AATCAAAAACTATATATTATATATG
1 TTTTCAAAAATGTTTTC-AAAACTATATA-TATATATA
***
18409544 TTTTCAAAAACAATTT-AAAACTATATAATATATATA
1 TTTTCAAAAATGTTTTCAAAACTATAT-ATATATATA
** *
18409580 TTTTCGAAAACCGTTTTCAAAACTATATA-ATATACA
1 TTTTC-AAAAATGTTTTCAAAACTATATATATATATA
* * *
18409616 TTTTCAAAAACCAATTTTTTCAAAAAGTATATAT-TATATG
1 TTTTC--AAA--AATGTTTTC-AAAACTATATATATATATA
18409656 TTTTCAAAAAATGTTTTCTAAAA
1 TTTTC-AAAAATGTTTTC-AAAA
18409679 AATATAAAAA
Statistics
Matches: 266, Mismatches: 33, Indels: 55
0.75 0.09 0.16
Matches are distributed among these distances:
35 43 0.16
36 45 0.17
37 32 0.12
38 41 0.15
39 41 0.15
40 46 0.17
41 1 0.00
42 6 0.02
43 11 0.04
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (36 bp):
TTTTCAAAAATGTTTTCAAAACTATATATATATATA
Found at i:18409671 original size:13 final size:14
Alignment explanation
Indices: 18409653--18409681 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
18409643 TATATATTAT
18409653 ATGTTTTC-AAAAA
1 ATGTTTTCTAAAAA
18409666 ATGTTTTCTAAAAA
1 ATGTTTTCTAAAAA
18409680 AT
1 AT
18409682 ATAAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (14 bp):
ATGTTTTCTAAAAA
Found at i:18417127 original size:16 final size:16
Alignment explanation
Indices: 18417106--18417164 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
18417096 AACTGGTACT
18417106 ACCTGACATGTTTTCA
1 ACCTGACATGTTTTCA
* *
18417122 ACCTGACATGTTATGA
1 ACCTGACATGTTTTCA
* *
18417138 ACCTGACCTATTTTCA
1 ACCTGACATGTTTTCA
18417154 ACCTGACATGT
1 ACCTGACATGT
18417165 AAATGATCCG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (16 bp):
ACCTGACATGTTTTCA
Found at i:18417339 original size:20 final size:21
Alignment explanation
Indices: 18417311--18417364 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
18417301 TAATATGATT
* * *
18417311 AATTTTTAAATGTTATAA-TA
1 AATTATTAAATATGATAATTA
*
18417331 AATTATTAATTATGATAATTA
1 AATTATTAAATATGATAATTA
*
18417352 AATTAATAAATAT
1 AATTATTAAATAT
18417365 ACTTATTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (21 bp):
AATTATTAAATATGATAATTA
Found at i:18417380 original size:30 final size:32
Alignment explanation
Indices: 18417326--18417398 Score: 77
Period size: 30 Copynumber: 2.4 Consensus size: 32
18417316 TTAAATGTTA
18417326 TAATAAAT-TA-TTAATTATGATAATTA-AAT
1 TAATAAATATACTTAATTATGATAATTATAAT
*
18417355 TAATAAATATACTT-ATTAT-ATTAATTATTAT
1 TAATAAATATACTTAATTATGA-TAATTATAAT
*
18417386 T-ATTAATATACTT
1 TAATAAATATACTT
18417399 TATATTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 9 0.24
30 24 0.63
31 5 0.13
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (32 bp):
TAATAAATATACTTAATTATGATAATTATAAT
Found at i:18417390 original size:18 final size:18
Alignment explanation
Indices: 18417334--18417390 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
18417324 TATAATAAAT
* *
18417334 TATTAATTATGATAATTA
1 TATTAATTATTATTATTA
* *
18417352 AATTAATAAATATACTTATTA
1 TATTAAT-TAT-TA-TTATTA
18417373 TATTAATTATTATTATTA
1 TATTAATTATTATTATTA
18417391 ATATACTTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
18 12 0.40
19 4 0.13
20 3 0.10
21 11 0.37
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
TATTAATTATTATTATTA
Found at i:18417419 original size:6 final size:6
Alignment explanation
Indices: 18417410--18417547 Score: 276
Period size: 6 Copynumber: 23.0 Consensus size: 6
18417400 ATATTTAATA
18417410 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18417458 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18417506 CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18417548 AAATTGGAAA
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 132 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (6 bp):
CACATG
Found at i:18417643 original size:24 final size:24
Alignment explanation
Indices: 18417599--18417644 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
18417589 TGATGAGAGA
* *
18417599 TGAAATTGAATTAATTTTAAAATG
1 TGAAACTGAATTAATTATAAAATG
18417623 TGAAACTGATATTAA-TATAAAA
1 TGAAACTGA-ATTAATTATAAAA
18417645 AATGGACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (24 bp):
TGAAACTGAATTAATTATAAAATG
Found at i:18417645 original size:25 final size:24
Alignment explanation
Indices: 18417599--18417645 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
18417589 TGATGAGAGA
* * *
18417599 TGAAATTGAATTAATTTTAAAATG
1 TGAAACTGAATTAATATAAAAATG
18417623 TGAAACTGATATTAATATAAAAA
1 TGAAACTGA-ATTAATATAAAAA
18417646 ATGGACTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (24 bp):
TGAAACTGAATTAATATAAAAATG
Found at i:18418107 original size:2 final size:2
Alignment explanation
Indices: 18417933--18418089 Score: 206
Period size: 2 Copynumber: 78.5 Consensus size: 2
18417923 TTATAATATA
18417933 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
18417975 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
18418017 CG CG CG CG TG TA TG TG TG TG TG TA TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
18418059 TG TA TA TG TG TG TG TG TG TT TG TG TC TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
18418090 ATATGTATAT
Statistics
Matches: 141, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 141 1.00
ACGTcount: A:0.03, C:0.04, G:0.46, T:0.47
Consensus pattern (2 bp):
TG
Found at i:18418790 original size:20 final size:21
Alignment explanation
Indices: 18418762--18418815 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
18418752 TAATATGATT
* * *
18418762 AATTTTTAAATGTTATAA-TA
1 AATTATTAAATATGATAATTA
*
18418782 AATTATTAATTATGATAATTA
1 AATTATTAAATATGATAATTA
*
18418803 AATTAATAAATAT
1 AATTATTAAATAT
18418816 ACTTATTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (21 bp):
AATTATTAAATATGATAATTA
Found at i:18418831 original size:30 final size:32
Alignment explanation
Indices: 18418777--18418849 Score: 77
Period size: 30 Copynumber: 2.4 Consensus size: 32
18418767 TTAAATGTTA
18418777 TAATAAAT-TA-TTAATTATGATAATTA-AAT
1 TAATAAATATACTTAATTATGATAATTATAAT
*
18418806 TAATAAATATACTT-ATTAT-ATTAATTATTAT
1 TAATAAATATACTTAATTATGA-TAATTATAAT
*
18418837 T-ATTAATATACTT
1 TAATAAATATACTT
18418850 TATATTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 9 0.24
30 24 0.63
31 5 0.13
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (32 bp):
TAATAAATATACTTAATTATGATAATTATAAT
Found at i:18418841 original size:18 final size:18
Alignment explanation
Indices: 18418785--18418841 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
18418775 TATAATAAAT
* *
18418785 TATTAATTATGATAATTA
1 TATTAATTATTATTATTA
* *
18418803 AATTAATAAATATACTTATTA
1 TATTAAT-TAT-TA-TTATTA
18418824 TATTAATTATTATTATTA
1 TATTAATTATTATTATTA
18418842 ATATACTTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
18 12 0.40
19 4 0.13
20 3 0.10
21 11 0.37
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
TATTAATTATTATTATTA
Found at i:18418867 original size:6 final size:6
Alignment explanation
Indices: 18418861--18419076 Score: 414
Period size: 6 Copynumber: 36.0 Consensus size: 6
18418851 ATATTTAATA
* *
18418861 CACATA CACATA CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18418909 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18418957 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18419005 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18419053 CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG
18419077 AAATTGGAAA
Statistics
Matches: 209, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 209 1.00
ACGTcount: A:0.34, C:0.33, G:0.16, T:0.17
Consensus pattern (6 bp):
CACATG
Found at i:18419172 original size:24 final size:24
Alignment explanation
Indices: 18419128--18419173 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
18419118 TGATGAGAGA
* *
18419128 TGAAATTGAATTAATTTTAAAATG
1 TGAAACTGAATTAATTATAAAATG
18419152 TGAAACTGATATTAA-TATAAAA
1 TGAAACTGA-ATTAATTATAAAA
18419174 AATGGACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (24 bp):
TGAAACTGAATTAATTATAAAATG
Found at i:18419174 original size:25 final size:24
Alignment explanation
Indices: 18419128--18419174 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
18419118 TGATGAGAGA
* * *
18419128 TGAAATTGAATTAATTTTAAAATG
1 TGAAACTGAATTAATATAAAAATG
18419152 TGAAACTGATATTAATATAAAAA
1 TGAAACTGA-ATTAATATAAAAA
18419175 ATGGACTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (24 bp):
TGAAACTGAATTAATATAAAAATG
Found at i:18419630 original size:2 final size:2
Alignment explanation
Indices: 18419460--18419612 Score: 189
Period size: 2 Copynumber: 76.5 Consensus size: 2
18419450 TTATAATATA
18419460 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
18419502 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG CG CG CG CG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
18419544 CG CG TG TA TG TG TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * *
18419586 TA TG TG TG TG TG TG TT TG TG TC TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
18419613 ATATGTATAT
Statistics
Matches: 139, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 139 1.00
ACGTcount: A:0.02, C:0.06, G:0.46, T:0.46
Consensus pattern (2 bp):
TG
Found at i:18419633 original size:12 final size:12
Alignment explanation
Indices: 18419460--18419632 Score: 138
Period size: 12 Copynumber: 14.8 Consensus size: 12
18419450 TTATAATATA
*
18419460 TGTGTGTGTGTG
1 TGTGTGTATGTG
*
18419472 TGTGTGTGTGTG
1 TGTGTGTATGTG
*
18419484 TGTGTGTGTGTG
1 TGTGTGTATGTG
*
18419496 TGTGTGTGTGTG
1 TGTGTGTATGTG
*
18419508 TGTGTGTGTGTG
1 TGTGTGTATGTG
*
18419520 TGTGTGTGTGTG
1 TGTGTGTATGTG
* * * *** *
18419532 CGCGCGCGCGCG
1 TGTGTGTATGTG
* *
18419544 CGCGTGTATGTG
1 TGTGTGTATGTG
18419556 TGTGTGTATGTG
1 TGTGTGTATGTG
*
18419568 TGTGTGTGTGTG
1 TGTGTGTATGTG
18419580 TGTGTGTATGTG
1 TGTGTGTATGTG
18419592 TGTGTG--TGT-
1 TGTGTGTATGTG
*
18419601 T-TGTGTCTGTG
1 TGTGTGTATGTG
* * *
18419612 TATATGTATATG
1 TGTGTGTATGTG
18419624 TGTGTGTAT
1 TGTGTGTAT
18419633 AATATGTATA
Statistics
Matches: 137, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
8 4 0.03
9 1 0.01
10 6 0.04
11 1 0.01
12 125 0.91
ACGTcount: A:0.05, C:0.05, G:0.44, T:0.46
Consensus pattern (12 bp):
TGTGTGTATGTG
Found at i:18420317 original size:20 final size:21
Alignment explanation
Indices: 18420289--18420342 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
18420279 TAATATGATT
* * *
18420289 AATTTTTAAATGTTATAA-TA
1 AATTATTAAATATGATAATTA
*
18420309 AATTATTAATTATGATAATTA
1 AATTATTAAATATGATAATTA
*
18420330 AATTAATAAATAT
1 AATTATTAAATAT
18420343 ACTTATTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (21 bp):
AATTATTAAATATGATAATTA
Found at i:18420393 original size:6 final size:6
Alignment explanation
Indices: 18420387--18420644 Score: 453
Period size: 6 Copynumber: 43.0 Consensus size: 6
18420377 ATATTTAATA
* * * * * *
18420387 CACATA CACATA CACATA CACATA CACATG CACATA CACATA CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18420435 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18420483 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18420531 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
*
18420579 CACATG CACATG CACATG CACATG CACATG CACATG CACATG AACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18420627 CACATG CACATG CACATG
1 CACATG CACATG CACATG
18420645 AAATTGGAAA
Statistics
Matches: 247, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 247 1.00
ACGTcount: A:0.36, C:0.33, G:0.14, T:0.17
Consensus pattern (6 bp):
CACATG
Found at i:18420740 original size:24 final size:24
Alignment explanation
Indices: 18420696--18420741 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
18420686 TGATGAGAGA
* *
18420696 TGAAATTGAATTAATTTTAAAATG
1 TGAAACTGAATTAATTATAAAATG
18420720 TGAAACTGATATTAA-TATAAAA
1 TGAAACTGA-ATTAATTATAAAA
18420742 AATGGACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (24 bp):
TGAAACTGAATTAATTATAAAATG
Found at i:18420742 original size:25 final size:24
Alignment explanation
Indices: 18420696--18420742 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
18420686 TGATGAGAGA
* * *
18420696 TGAAATTGAATTAATTTTAAAATG
1 TGAAACTGAATTAATATAAAAATG
18420720 TGAAACTGATATTAATATAAAAA
1 TGAAACTGA-ATTAATATAAAAA
18420743 ATGGACTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (24 bp):
TGAAACTGAATTAATATAAAAATG
Found at i:18421201 original size:2 final size:2
Alignment explanation
Indices: 18421029--18421183 Score: 184
Period size: 2 Copynumber: 77.5 Consensus size: 2
18421019 TTATAATATA
*
18421029 TG TG TG TG TG TG TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
18421071 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * ** *
18421113 CG CG CG CG TG TA TG TG TG TG TG CA TG TG TG TG TG TG TG TG TA
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
18421155 TA TA TG TG TG TG TG TG TT TG TG TC TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
18421184 ATATGTATAT
Statistics
Matches: 137, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 137 1.00
ACGTcount: A:0.04, C:0.05, G:0.45, T:0.47
Consensus pattern (2 bp):
TG
Found at i:18421202 original size:18 final size:18
Alignment explanation
Indices: 18421139--18421204 Score: 60
Period size: 18 Copynumber: 3.7 Consensus size: 18
18421129 TGTGTGCATG
* *
18421139 TGTGTGTGTGTGTGTATA
1 TGTGTGTGTATATGTATA
* * * * *
18421157 TATGTGTGTGTGTGTTTG
1 TGTGTGTGTATATGTATA
*
18421175 TGTCTGTGTATATGTATA
1 TGTGTGTGTATATGTATA
18421193 TGTGTGTGTATA
1 TGTGTGTGTATA
18421205 ATATGTATAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.14, C:0.02, G:0.33, T:0.52
Consensus pattern (18 bp):
TGTGTGTGTATATGTATA
Found at i:18421883 original size:20 final size:21
Alignment explanation
Indices: 18421855--18421908 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
18421845 TAATATGATT
* * *
18421855 AATTTTTAAATGTTATAA-TA
1 AATTATTAAATATGATAATTA
*
18421875 AATTATTAATTATGATAATTA
1 AATTATTAAATATGATAATTA
*
18421896 AATTAATAAATAT
1 AATTATTAAATAT
18421909 ACTTATTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (21 bp):
AATTATTAAATATGATAATTA
Found at i:18421924 original size:30 final size:32
Alignment explanation
Indices: 18421870--18421942 Score: 77
Period size: 30 Copynumber: 2.4 Consensus size: 32
18421860 TTAAATGTTA
18421870 TAATAAAT-TA-TTAATTATGATAATTA-AAT
1 TAATAAATATACTTAATTATGATAATTATAAT
*
18421899 TAATAAATATACTT-ATTAT-ATTAATTATTAT
1 TAATAAATATACTTAATTATGA-TAATTATAAT
*
18421930 T-ATTAATATACTT
1 TAATAAATATACTT
18421943 TATATTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 9 0.24
30 24 0.63
31 5 0.13
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (32 bp):
TAATAAATATACTTAATTATGATAATTATAAT
Found at i:18421934 original size:18 final size:18
Alignment explanation
Indices: 18421878--18421934 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
18421868 TATAATAAAT
* *
18421878 TATTAATTATGATAATTA
1 TATTAATTATTATTATTA
* *
18421896 AATTAATAAATATACTTATTA
1 TATTAAT-TAT-TA-TTATTA
18421917 TATTAATTATTATTATTA
1 TATTAATTATTATTATTA
18421935 ATATACTTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
18 12 0.40
19 4 0.13
20 3 0.10
21 11 0.37
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
TATTAATTATTATTATTA
Found at i:18421960 original size:6 final size:6
Alignment explanation
Indices: 18421954--18422187 Score: 423
Period size: 6 Copynumber: 39.0 Consensus size: 6
18421944 ATATTTAATA
* *
18421954 CACATA CACATA CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18422002 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18422050 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18422098 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG CACATG
* * *
18422146 CACATA CACATA CACATA CACATG CACATG CACATG CACATG
1 CACATG CACATG CACATG CACATG CACATG CACATG CACATG
18422188 AAATTGGAAA
Statistics
Matches: 225, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 225 1.00
ACGTcount: A:0.35, C:0.33, G:0.15, T:0.17
Consensus pattern (6 bp):
CACATG
Found at i:18422283 original size:24 final size:24
Alignment explanation
Indices: 18422239--18422284 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
18422229 TGATGAGAGA
* *
18422239 TGAAATTGAATTAATTTTAAAATG
1 TGAAACTGAATTAATTATAAAATG
18422263 TGAAACTGATATTAA-TATAAAA
1 TGAAACTGA-ATTAATTATAAAA
18422285 AATGGACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (24 bp):
TGAAACTGAATTAATTATAAAATG
Found at i:18422285 original size:25 final size:24
Alignment explanation
Indices: 18422239--18422285 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
18422229 TGATGAGAGA
* * *
18422239 TGAAATTGAATTAATTTTAAAATG
1 TGAAACTGAATTAATATAAAAATG
18422263 TGAAACTGATATTAATATAAAAA
1 TGAAACTGA-ATTAATATAAAAA
18422286 ATGGACTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (24 bp):
TGAAACTGAATTAATATAAAAATG
Found at i:18422710 original size:2 final size:2
Alignment explanation
Indices: 18422572--18422692 Score: 116
Period size: 2 Copynumber: 60.5 Consensus size: 2
18422562 TTATAATATA
*
18422572 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
18422614 CG CG CG CG CG CG CG TG TA TG TG TG TG TG TA TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
18422656 TG TG TG TA TA TG TG TG TG TG TG TG TT TG TG TC TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
18422693 ATATGTATAT
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 107 1.00
ACGTcount: A:0.03, C:0.07, G:0.45, T:0.45
Consensus pattern (2 bp):
TG
Found at i:18422711 original size:12 final size:12
Alignment explanation
Indices: 18422630--18422713 Score: 73
Period size: 12 Copynumber: 7.2 Consensus size: 12
18422620 CGCGCGCGTG
*
18422630 TATGTGTGTGTG
1 TATGTGTGTGTA
18422642 TATGTGTGTG--
1 TATGTGTGTGTA
*
18422652 TGTGTGTGTGTA
1 TATGTGTGTGTA
*
18422664 TATGTGTGTGTG
1 TATGTGTGTGTA
* * *
18422676 TGTGTTTGTGTC
1 TATGTGTGTGTA
* * *
18422688 TGTGTATATGTA
1 TATGTGTGTGTA
18422700 TATGTGTGTGTA
1 TATGTGTGTGTA
18422712 TA
1 TA
18422714 ATATGTATAA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
10 9 0.16
12 49 0.84
ACGTcount: A:0.12, C:0.01, G:0.36, T:0.51
Consensus pattern (12 bp):
TATGTGTGTGTA
Found at i:18424530 original size:16 final size:15
Alignment explanation
Indices: 18424511--18424576 Score: 62
Period size: 16 Copynumber: 4.2 Consensus size: 15
18424501 AACTTAATTA
*
18424511 AAATAATTAAAACAAT
1 AAATAAATAAAA-AAT
18424527 AAATAAATAAAAAAT
1 AAATAAATAAAAAAT
*
18424542 AAA-AATAGTAAAAAAC
1 AAATAA-A-TAAAAAAT
*
18424558 AATAAAAATAAAAAAT
1 AA-ATAAATAAAAAAT
18424574 AAA
1 AAA
18424577 ATAAGTACAA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 2 0.05
15 8 0.19
16 29 0.67
17 2 0.05
18 2 0.05
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (15 bp):
AAATAAATAAAAAAT
Found at i:18424543 original size:7 final size:7
Alignment explanation
Indices: 18424518--18424577 Score: 57
Period size: 7 Copynumber: 7.7 Consensus size: 7
18424508 TTAAAATAAT
18424518 TAAAACAA
1 TAAAA-AA
18424526 TAAATAAA
1 TAAA-AAA
18424534 TAAAAAA
1 TAAAAAA
18424541 TAAAAATA
1 TAAAAA-A
18424549 GTAAAAAA
1 -TAAAAAA
*
18424557 CAATAAAAA
1 -TA-AAAAA
18424566 TAAAAAA
1 TAAAAAA
18424573 TAAAA
1 TAAAA
18424578 TAAGTACAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
7 19 0.42
8 14 0.31
9 12 0.27
ACGTcount: A:0.78, C:0.03, G:0.02, T:0.17
Consensus pattern (7 bp):
TAAAAAA
Found at i:18425989 original size:117 final size:117
Alignment explanation
Indices: 18425792--18426141 Score: 517
Period size: 117 Copynumber: 3.0 Consensus size: 117
18425782 GGGGATTTTA
* * * *
18425792 ATCCACTTCCTTCAGTGATGGAA-T-CACCAAGGTTG-ACAAGTTCTTCTCATTATGAATTTCTT
1 ATCCACCTCCTTCTGTGATGGAATTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTT
* *
18425854 CTCCCTCATCGGATGAGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTG
66 CTCCCTCGTCGGATGAGTTCTTCTCATTATGAACTCTCCACTAGAAATGTTG
* *
18425906 ATCCACCTCCTTTTGTGATGGAATTGAACCAAGGTTGAACAAGTTCTACTCATTATGAACTTCTT
1 ATCCACCTCCTTCTGTGATGGAATTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTT
*
18425971 CTCCCTCGTCGGATGAGTTCTTCTCATTATGAACTCTCTACTAGAAATGTTG
66 CTCCCTCGTCGGATGAGTTCTTCTCATTATGAACTCTCCACTAGAAATGTTG
** * * * *
18426023 ATCCACCTTATTCTATGATGGAATCGAACAAAGGTTGAACAAGTTCTTCTCATTATAAACTTCTT
1 ATCCACCTCCTTCTGTGATGGAATTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTT
* *
18426088 CTCCCTCGTTGGATGAGTTCTTCTCATTATAAAACTCTCCACTAGAAATGTTG
66 CTCCCTCGTCGGATGAGTTCTTCTCATTAT-GAACTCTCCACTAGAAATGTTG
18426141 A
1 A
18426142 GCCAATGTTG
Statistics
Matches: 212, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
114 20 0.09
115 1 0.00
116 10 0.05
117 160 0.75
118 21 0.10
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (117 bp):
ATCCACCTCCTTCTGTGATGGAATTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTT
CTCCCTCGTCGGATGAGTTCTTCTCATTATGAACTCTCCACTAGAAATGTTG
Found at i:18426169 original size:92 final size:91
Alignment explanation
Indices: 18426056--18426232 Score: 300
Period size: 92 Copynumber: 1.9 Consensus size: 91
18426046 TCGAACAAAG
*
18426056 GTTGAACAAGTTCTTCTCATTATAAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATAAA
1 GTTGAACAAGTTCTTCTCATTATAAACTTCTTCTCCATCGTTGGATGAGTTCTTCTCATTAT-AA
18426121 ACTCTCCACTAGAAATGTTGAGCCAAT
65 ACTCTCCACTAGAAATGTTGAGCCAAT
** *
18426148 GTTGAACAAGTTCTTCTCATTATGTACTTCTTCTCCATCGTTGGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATAAACTTCTTCTCCATCGTTGGATGAGTTCTTCTCATTATAAA
*
18426213 CTCTCCACTGGAAATGTTGA
66 CTCTCCACTAGAAATGTTGA
18426233 TCCCTCAAGC
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 21 0.26
92 59 0.74
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (91 bp):
GTTGAACAAGTTCTTCTCATTATAAACTTCTTCTCCATCGTTGGATGAGTTCTTCTCATTATAAA
CTCTCCACTAGAAATGTTGAGCCAAT
Found at i:18427344 original size:42 final size:40
Alignment explanation
Indices: 18427244--18427366 Score: 122
Period size: 42 Copynumber: 3.0 Consensus size: 40
18427234 CATTTGAAAA
* * *
18427244 CATCATGCTC-AAAGGTCTTATGGATGGCCCGAATGACTTAT
1 CATCATGCTCGAAA-GACTTAT-GATGGCCCGAAGGACTTAG
* * * *
18427285 CATCTTTCTCGAAAGACTTATAGATGACCCGAAGGATTTAAG
1 CATCATGCTCGAAAGACTTAT-GATGGCCCGAAGGACTT-AG
*
18427327 CATCATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTA
1 CATCATGCTCGAAAGACTTA-TGATGGCCCGAAGGACTTA
18427367 CTCGTCAAGA
Statistics
Matches: 66, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
41 29 0.44
42 36 0.55
43 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (40 bp):
CATCATGCTCGAAAGACTTATGATGGCCCGAAGGACTTAG
Found at i:18427527 original size:52 final size:54
Alignment explanation
Indices: 18427468--18427578 Score: 136
Period size: 52 Copynumber: 2.1 Consensus size: 54
18427458 TGGAGATAAT
* *
18427468 CATCAAGAAACCCCTGAAAATCAAGCTTAG-TT-TTTAAAAACTCATTTGAAAA
1 CATCAAGAAACCCATAAAAATCAAGCTTAGCTTCTTTAAAAACTCATTTGAAAA
* * * * **
18427520 CATCAAGAAACCCATAAAAATTAGGCTTAGCTTCTTTCAAAATTTGTTTGAAAA
1 CATCAAGAAACCCATAAAAATCAAGCTTAGCTTCTTTAAAAACTCATTTGAAAA
18427574 CATCA
1 CATCA
18427579 TATTGTTTGG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
52 26 0.53
53 2 0.04
54 21 0.43
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (54 bp):
CATCAAGAAACCCATAAAAATCAAGCTTAGCTTCTTTAAAAACTCATTTGAAAA
Found at i:18428886 original size:28 final size:28
Alignment explanation
Indices: 18428854--18428943 Score: 126
Period size: 28 Copynumber: 3.2 Consensus size: 28
18428844 AATAAGGCTT
18428854 AGGTTGACTTGGGAAGATAATGCATTTC
1 AGGTTGACTTGGGAAGATAATGCATTTC
18428882 AGGTTGACTTGGGAAGATAATGCATTTC
1 AGGTTGACTTGGGAAGATAATGCATTTC
* * * * **
18428910 ATGTTAATTTGGGAAGGTAATGTGTTTC
1 AGGTTGACTTGGGAAGATAATGCATTTC
18428938 AGGTTG
1 AGGTTG
18428944 GCTTATTGCG
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.27, C:0.08, G:0.30, T:0.36
Consensus pattern (28 bp):
AGGTTGACTTGGGAAGATAATGCATTTC
Found at i:18429630 original size:7 final size:7
Alignment explanation
Indices: 18429603--18429663 Score: 72
Period size: 7 Copynumber: 8.7 Consensus size: 7
18429593 TATTTTTCTA
18429603 TCTTTTT
1 TCTTTTT
* *
18429610 TCTCTCT
1 TCTTTTT
18429617 TCTTTTTT
1 TC-TTTTT
18429625 TCTTTTT
1 TCTTTTT
18429632 TC--TTT
1 TCTTTTT
18429637 TCTTTTT
1 TCTTTTT
18429644 TCCTTTTT
1 T-CTTTTT
18429652 TCTTTTT
1 TCTTTTT
18429659 TCTTT
1 TCTTT
18429664 CATTTCTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 5 0.11
7 29 0.63
8 12 0.26
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (7 bp):
TCTTTTT
Found at i:18429637 original size:27 final size:27
Alignment explanation
Indices: 18429573--18429707 Score: 98
Period size: 27 Copynumber: 5.0 Consensus size: 27
18429563 TTGTATCCGT
*
18429573 TTTTTTC-TTTCTTTCGTATCTATTTTTC
1 TTTTTTCTTTTCTTTC-T-TCTTTTTTTC
* * *
18429601 TATCTT-TTTTCTCTCTTCTTTTTTTC
1 TTTTTTCTTTTCTTTCTTCTTTTTTTC
* *
18429627 TTTTTTCTTTTCTTTTTTCCTTTTTTC
1 TTTTTTCTTTTCTTTCTTCTTTTTTTC
* *
18429654 TTTTTTC-TTTCATTTCTCTATTTTTTTG
1 TTTTTTCTTTTC-TTTCT-TCTTTTTTTC
* * *
18429682 TGTTTTT-TTATATCTCTTCTTTTTTT
1 T-TTTTTCTTTTCTTTCTTCTTTTTTT
18429708 TCTATGTATT
Statistics
Matches: 84, Mismatches: 17, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
26 17 0.20
27 37 0.44
28 23 0.27
29 7 0.08
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (27 bp):
TTTTTTCTTTTCTTTCTTCTTTTTTTC
Found at i:18429639 original size:20 final size:20
Alignment explanation
Indices: 18429603--18429657 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 20
18429593 TATTTTTCTA
18429603 TCTTTTTTCTCTCTTCTTTTTT
1 TCTTTTTTCT-T-TTCTTTTTT
18429625 TCTTTTTTCTTTTCTTTTTT
1 TCTTTTTTCTTTTCTTTTTT
*
18429645 CCTTTTTTCTTTT
1 TCTTTTTTCTTTT
18429658 TTCTTTCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 21 0.66
21 1 0.03
22 10 0.31
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (20 bp):
TCTTTTTTCTTTTCTTTTTT
Found at i:18429652 original size:15 final size:15
Alignment explanation
Indices: 18429604--18429660 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
18429594 ATTTTTCTAT
* *
18429604 CTTTTTTCTCTCTTC
1 CTTTTTTCTTTTTTC
*
18429619 TTTTTTTCTTTTTT-
1 CTTTTTTCTTTTTTC
18429633 C--TTTTCTTTTTTC
1 CTTTTTTCTTTTTTC
18429646 CTTTTTTCTTTTTTC
1 CTTTTTTCTTTTTTC
18429661 TTTCATTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
12 11 0.31
13 1 0.03
15 23 0.66
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
CTTTTTTCTTTTTTC
Found at i:18429669 original size:5 final size:4
Alignment explanation
Indices: 18429576--18429670 Score: 60
Period size: 4 Copynumber: 24.2 Consensus size: 4
18429566 TATCCGTTTT
* * * *
18429576 TTTC TTTC TTTC GTATC TATT- TTTC TATC TTT- TTTC TCTC -TTC TTTT
1 TTTC TTTC TTTC -TTTC T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
18429623 TTTC TTT- TTTC TTTTC TTT- TTTCC TTT- TTTC TTT- TTTC TTTC ATTTC
1 TTTC TTTC TTTC -TTTC TTTC TTT-C TTTC TTTC TTTC TTTC TTTC -TTTC
18429670 T
1 T
18429671 CTATTTTTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 24
0.69 0.08 0.23
Matches are distributed among these distances:
3 19 0.27
4 37 0.52
5 15 0.21
ACGTcount: A:0.04, C:0.20, G:0.01, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:18432164 original size:26 final size:28
Alignment explanation
Indices: 18432134--18432195 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 28
18432124 GAAAATTTTA
18432134 AGCTCG-C-GAGTTTTCGAGTCGAGTCG
1 AGCTCGTCAGAGTTTTCGAGTCGAGTCG
18432160 AGCTCGATTTCAGAGTTTTCGAGTCGAGTCG
1 AGCTCG---TCAGAGTTTTCGAGTCGAGTCG
18432191 AGCTC
1 AGCTC
18432196 AGCAATACTC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
26 6 0.19
30 1 0.03
31 24 0.77
ACGTcount: A:0.18, C:0.23, G:0.31, T:0.29
Consensus pattern (28 bp):
AGCTCGTCAGAGTTTTCGAGTCGAGTCG
Found at i:18434372 original size:21 final size:21
Alignment explanation
Indices: 18434315--18434380 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
18434305 TCCAGTGACC
18434315 AAAATA-CAACAAATAAT-AA-
1 AAAATAGCAA-AAATAATGAAT
18434334 AAAATAG-ATAAATTATAATGAAT
1 AAAATAGCA-AAA--ATAATGAAT
*
18434357 AAAATAGCAAAAATAATGACT
1 AAAATAGCAAAAATAATGAAT
18434378 AAA
1 AAA
18434381 TCAAAAGTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
19 9 0.23
20 1 0.03
21 16 0.41
22 2 0.05
23 10 0.26
24 1 0.03
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (21 bp):
AAAATAGCAAAAATAATGAAT
Found at i:18434754 original size:21 final size:22
Alignment explanation
Indices: 18434718--18434760 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
18434708 GAACAACCTA
*
18434718 AAACTCTACTCGTTCTCTTCCT
1 AAACTCTACTCGTTCTCCTCCT
*
18434740 AAACT-TACTCTTTCTCCTCCT
1 AAACTCTACTCGTTCTCCTCCT
18434761 TTTCTCCTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.19, C:0.37, G:0.02, T:0.42
Consensus pattern (22 bp):
AAACTCTACTCGTTCTCCTCCT
Found at i:18443468 original size:2 final size:2
Alignment explanation
Indices: 18443463--18443927 Score: 393
Period size: 2 Copynumber: 232.0 Consensus size: 2
18443453 TAATTATAGT
18443463 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18443505 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18443547 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CT- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * *
18443589 TA AA TA TA AA TA TA TA TA -A TA T- TA -A TA T- TA -A TA GA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
18443625 AA GTA TA TA CA TA TA -A GTA TA TA AA TA TA TA TA AA TA TA TA TG
1 TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
*
18443668 CA CT- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
18443710 TA TA TA TA TA TA TA TA TA T- TC TT TA AA GTA TA AA GTG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA
* *
18443753 TA TA TA -A CTA TA AA GTA TA -A GTA TA TA TA -A GTA TA TA TA AA
1 TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA -TA TA TA TA TA
* * * * *
18443794 CTA TA AA GTA TA TA TA CTT TA TA CTA -A AA CTT TA CA TA TA TA TA
1 -TA TA TA -TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA
* * * * * * * * * * *
18443838 CTT TA TA T- TA TA TA TA CA CA CA CA CA CA CA CA CA CA TA TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18443880 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18443922 TA TA TA
1 TA TA TA
18443928 AAGTTTTAGT
Statistics
Matches: 391, Mismatches: 41, Indels: 62
0.79 0.08 0.13
Matches are distributed among these distances:
1 15 0.04
2 362 0.93
3 14 0.04
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.43
Consensus pattern (2 bp):
TA
Found at i:18443764 original size:23 final size:23
Alignment explanation
Indices: 18443738--18443787 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
18443728 TTCTTTAAAG
*
18443738 TATAAAGTGTATA-TATATATAAC
1 TATAAAGTATA-AGTATATATAAC
*
18443761 TATAAAGTATAAGTATATATAAG
1 TATAAAGTATAAGTATATATAAC
18443784 TATA
1 TATA
18443788 TATAAACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 23 0.96
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (23 bp):
TATAAAGTATAAGTATATATAAC
Found at i:18444025 original size:10 final size:8
Alignment explanation
Indices: 18443935--18444510 Score: 112
Period size: 8 Copynumber: 76.0 Consensus size: 8
18443925 ATAAAGTTTT
18443935 AGTATA-A
1 AGTATATA
*
18443942 AGTGTATA
1 AGTATATA
18443950 CAGGTATATA
1 -A-GTATATA
18443960 A-TA-ATA
1 AGTATATA
18443966 TAGTATATA
1 -AGTATATA
*
18443975 AGTAT-TG
1 AGTATATA
18443982 AGTATAT-
1 AGTATATA
18443989 -GTAT-TA
1 AGTATATA
*
18443995 AATATA-A
1 AGTATATA
18444002 AGTATATA
1 AGTATATA
18444010 AGTATATA
1 AGTATATA
18444018 AGTATAT-
1 AGTATATA
18444025 A-TATA-A
1 AGTATATA
*
18444031 ACTATA-A
1 AGTATATA
*
18444038 AGTGTATA
1 AGTATATA
18444046 TA-TATATA
1 -AGTATATA
18444054 TA-TATATA
1 -AGTATATA
*
18444062 TAGT-T-TT
1 -AGTATATA
18444069 AGTATA-A
1 AGTATATA
18444076 AGTATATGTA
1 AGTATA--TA
18444086 CA-TATATA
1 -AGTATATA
*
18444094 ATTAATATA
1 AGT-ATATA
18444103 A--AGTATA
1 AGTA-TATA
18444110 AGTATAT-
1 AGTATATA
18444117 --TATAT-
1 AGTATATA
18444122 A-TATATA
1 AGTATATA
*
18444129 AAT-TATA
1 AGTATATA
*
18444136 ATTATA-A
1 AGTATATA
18444143 AG-ACTA-A
1 AGTA-TATA
18444150 AGTATATA
1 AGTATATA
*
18444158 AATATATA
1 AGTATATA
*
18444166 A-TA-AAA
1 AGTATATA
18444172 AGTATATA
1 AGTATATA
*
18444180 AATATATAA
1 AGTATAT-A
18444189 AGTATATA
1 AGTATATA
*
18444197 TA-CATATAA
1 -AGTATAT-A
* *
18444206 AGTACAAGTG
1 AGTA-TA-TA
*
18444216 TGTATATA
1 AGTATATA
18444224 TA-TATATAA
1 -AGTATAT-A
*
18444233 AGT-T-TT
1 AGTATATA
18444239 AGTATA-A
1 AGTATATA
18444246 AGTATATTTA
1 AGTATA--TA
18444256 CA-TATATA
1 -AGTATATA
18444264 A-TA-AT-
1 AGTATATA
18444269 AG--TATA
1 AGTATATA
*
18444275 AGTCTAT-
1 AGTATATA
*
18444282 --TACATA
1 AGTATATA
18444288 AGTATATTA
1 AGTATA-TA
18444297 TA-TATATA
1 -AGTATATA
**
18444305 AAAAGTATA
1 AGTA-TATA
*
18444314 ATTATA-A
1 AGTATATA
18444321 AG-ACTA-A
1 AGTA-TATA
18444328 AGTATATA
1 AGTATATA
18444336 AGTATATA
1 AGTATATA
*
18444344 AATATA-A
1 AGTATATA
18444351 AGTATATA
1 AGTATATA
*
18444359 TACATATATA
1 -A-GTATATA
18444369 A-TAATATA
1 AGT-ATATA
*
18444377 A--AGCATA
1 AGTA-TATA
18444384 AGTATA-A
1 AGTATATA
*
18444391 GTGTATATA
1 -AGTATATA
18444400 TA-TATATA
1 -AGTATATA
* * *
18444408 TGCACAT-
1 AGTATATA
18444415 A-TATAATA
1 AGTAT-ATA
*
18444423 A-AATA-A
1 AGTATATA
18444429 AGTATATA
1 AGTATATA
18444437 AGTATATA
1 AGTATATA
18444445 A-TATA-A
1 AGTATATA
*
18444451 AATATATA
1 AGTATATA
18444459 AGTATATA
1 AGTATATA
18444467 A-TATA-A
1 AGTATATA
18444473 AGTATATA
1 AGTATATA
18444481 AGTAT-TA
1 AGTATATA
*
18444488 AATATA-A
1 AGTATATA
18444495 AGTATATA
1 AGTATATA
18444503 AGTATATA
1 AGTATATA
18444511 TCTATATCTA
Statistics
Matches: 430, Mismatches: 53, Indels: 171
0.66 0.08 0.26
Matches are distributed among these distances:
5 12 0.03
6 41 0.10
7 134 0.31
8 170 0.40
9 43 0.10
10 27 0.06
11 3 0.01
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (8 bp):
AGTATATA
Found at i:18444081 original size:28 final size:28
Alignment explanation
Indices: 18444048--18444109 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
18444038 AGTGTATATA
* * *
18444048 TATATATATATATATAGTTTTAGTATAAAG
1 TATATATACATATATA--ATTAATATAAAG
*
18444078 TATATGTACATATATAATTAATATAAAG
1 TATATATACATATATAATTAATATAAAG
18444106 TATA
1 TATA
18444110 AGTATATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 14 0.50
30 14 0.50
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.44
Consensus pattern (28 bp):
TATATATACATATATAATTAATATAAAG
Found at i:18444141 original size:13 final size:15
Alignment explanation
Indices: 18444115--18444198 Score: 52
Period size: 15 Copynumber: 5.7 Consensus size: 15
18444105 GTATAAGTAT
18444115 ATTATATATATATAA
1 ATTATATATATATAA
18444130 ATTATA-AT-TATAA
1 ATTATATATATATAA
* *
18444143 A-GACTAAAGTATATAA
1 ATTA-TATA-TATATAA
*
18444159 A-TATATA-ATAAAA
1 ATTATATATATATAA
*
18444172 AGTATATAAATATATAA
1 A-T-TATATATATATAA
*
18444189 AGTATATATA
1 ATTATATATA
18444199 CATATAAAGT
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
12 1 0.02
13 14 0.26
14 3 0.06
15 17 0.32
16 12 0.23
17 6 0.11
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.37
Consensus pattern (15 bp):
ATTATATATATATAA
Found at i:18444163 original size:134 final size:133
Alignment explanation
Indices: 18443953--18444198 Score: 258
Period size: 134 Copynumber: 1.8 Consensus size: 133
18443943 GTGTATACAG
* *
18443953 GTATATAATAATATAGTATATAAGTATTGAGTATATGTATTAAATATAAAGTATATAAGTATATA
1 GTATATAATAATATAGAATATAAGTATTGAGTATATATATTAAATATAAAGTATATAAGTATATA
* *
18444018 AGTATATATATA-AACTATAAAGTGTATATATATATATATATATATAGTTTTAGTATAAAGTATA
66 AGTATATATATATAA-TAAAAAGTATATATATATATATATATATATAGTTTTAGTATAAAGTATA
18444082 TGTACA
130 --TACA
* *
18444088 -TATATAATTAATATA-AAGTATAAGTA-T-ATTATATATATATAAAT-TATAATTATA-AAG-A
1 GTATATAA-TAATATAGAA-TATAAGTATTGAGTATATATAT-TAAATATA-AAGTATATAAGTA
* *
18444146 CTA-AAGTATATAAATATATAATAAAAAGTATATAAATATATAAAGTATATATA
62 -TATAAGTATAT--ATATATAATAAAAAGTATATATATATATATA-TATATATA
18444199 CATATAAAGT
Statistics
Matches: 94, Mismatches: 8, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
132 9 0.10
133 16 0.17
134 44 0.47
135 25 0.27
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.39
Consensus pattern (133 bp):
GTATATAATAATATAGAATATAAGTATTGAGTATATATATTAAATATAAAGTATATAAGTATATA
AGTATATATATATAATAAAAAGTATATATATATATATATATATATAGTTTTAGTATAAAGTATAT
ACA
Found at i:18444188 original size:170 final size:173
Alignment explanation
Indices: 18443993--18444408 Score: 508
Period size: 170 Copynumber: 2.4 Consensus size: 173
18443983 GTATATGTAT
*
18443993 TAAATATAAAGTATATAAGTATATAAGTATATATATAAACTATAAAGTGTATATATATATATATA
1 TAAATATAAAGTATATAAATATATAA-TATATATATAAACTATAAAGTGTATATATATATATATA
*
18444058 TATATAGTTTTAGTATAAAGTATATGTACATATATAATTAATA-TA-AAG-T-ATAAGTATATTA
65 TATAAAGTTTTAGTATAAAGTATATGTACATATATAA-TAATAGTATAAGTTAATAAGTATATTA
* *
18444119 TATATATATAAATTATAATTATAAAGACTAAAGTATATAAATATA
129 TATATATAAAAAGTATAATTATAAAGACTAAAGTATATAAATATA
* * ** * *
18444164 T-AATAAAAAGTATATAAATATATAA-AGTATATATACA-TATAAAGTACAAGTGTGTATATATA
1 TAAATATAAAGTATATAAATATATAATA-TATATATAAACTATAAAGT-GTA-TATATATATATA
*
18444226 TATATAAAGTTTTAGTATAAAGTATATTTACATATATAATAATAGTATAAGTCTATTACATAAGT
63 TATATAAAGTTTTAGTATAAAGTATATGTACATATATAATAATAGTATAAG----TTA-ATAAGT
*
18444291 ATATTATATATATAAAAAGTATAATTATAAAGACTAAAGTATATAAGTATA
123 ATATTATATATATAAAAAGTATAATTATAAAGACTAAAGTATATAAATATA
*
18444342 TAAATATAAAGTATATATACATATATAATA-ATATA-AAGCATAAGTATAAGTGTATATATATAT
1 TAAATATAAAGTATATA-A-ATATATAATATATATATAAAC-T-A-TA-AAGTGTATATATATAT
18444405 ATAT
60 ATAT
18444409 GCACATATAT
Statistics
Matches: 205, Mismatches: 19, Indels: 31
0.80 0.07 0.12
Matches are distributed among these distances:
168 9 0.04
169 15 0.07
170 71 0.35
171 4 0.02
176 1 0.00
178 55 0.27
179 15 0.07
180 6 0.03
181 9 0.04
182 13 0.06
183 3 0.01
184 4 0.02
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (173 bp):
TAAATATAAAGTATATAAATATATAATATATATATAAACTATAAAGTGTATATATATATATATAT
ATAAAGTTTTAGTATAAAGTATATGTACATATATAATAATAGTATAAGTTAATAAGTATATTATA
TATATAAAAAGTATAATTATAAAGACTAAAGTATATAAATATA
Found at i:18444523 original size:44 final size:44
Alignment explanation
Indices: 18444295--18444510 Score: 131
Period size: 44 Copynumber: 4.6 Consensus size: 44
18444285 ATAAGTATAT
* * *
18444295 TATAT-ATATAAAA-AGTATAATTATA-AAGACTAAAGTATATAAG
1 TATATAATATAAAATA-TATAAGTATATAATA-TAAACTATATAAG
*
18444338 TATATAAATATAAAGTATATATACATATATAATAATATAAAGCATAAGTATAAG
1 TATAT-AATATAAA--ATATATA-A-GTAT-ATAATATAAA-C-T-A-TATAAG
* * *
18444392 TGTAT-ATAT-ATATATATGCACA-TATATAATAAAATAAAGTATATAAG
1 TATATAATATAAAATATAT--A-AGTATATAAT---ATAAACTATATAAG
*
18444439 TATATAATATAAAATATATAAGTATATAATATAAAGTATATAAG
1 TATATAATATAAAATATATAAGTATATAATATAAACTATATAAG
*
18444483 TAT-TAAATATAAAGTATATAAGTATATA
1 TATAT-AATATAAAATATATAAGTATATA
18444511 TCTATATCTA
Statistics
Matches: 142, Mismatches: 9, Indels: 43
0.73 0.05 0.22
Matches are distributed among these distances:
43 6 0.04
44 39 0.27
45 7 0.05
46 1 0.01
47 24 0.17
48 12 0.08
49 20 0.14
50 5 0.04
51 12 0.08
52 5 0.04
53 1 0.01
54 10 0.07
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (44 bp):
TATATAATATAAAATATATAAGTATATAATATAAACTATATAAG
Found at i:18444524 original size:12 final size:12
Alignment explanation
Indices: 18444505--18444544 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
18444495 AGTATATAAG
18444505 TATATATCTATA
1 TATATATCTATA
*
18444517 TCTATATCTATA
1 TATATATCTATA
18444529 TATATATACT-TA
1 TATATAT-CTATA
18444541 TATA
1 TATA
18444545 CTTTATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 23 0.92
13 2 0.08
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (12 bp):
TATATATCTATA
Found at i:18452784 original size:22 final size:22
Alignment explanation
Indices: 18452759--18453008 Score: 129
Period size: 22 Copynumber: 11.5 Consensus size: 22
18452749 TACATATATA
*
18452759 TATATACTTTACATATA-ATACT
1 TATATACTTTATAT-TACATACT
* *
18452781 TATATATTTTATATTATATACT
1 TATATACTTTATATTACATACT
*
18452803 TATATACTTTATATTACATGCT
1 TATATACTTTATATTACATACT
* ** *
18452825 TATATACTTT-TGTCTTTATAAT
1 TATATACTTTATAT-TACATACT
*
18452847 TATA-A-TTTATATATATATA-T
1 TATATACTTTATAT-TACATACT
*
18452867 ATAATATAC-TTATACTTTATATTA-T
1 -T-ATATACTTTATA--TTACA-TACT
* **
18452892 TATATATGTATATATATTTTATAC-
1 TATATA-CT-T-TATATTACATACT
*
18452916 T-TATACTTTATATATATATACAT
1 TATATACTTTATAT-TACATAC-T
18452939 T-TATACTTTATATT-CATA-T
1 TATATACTTTATATTACATACT
18452958 TATATAC-TTA-A-T--ATACT
1 TATATACTTTATATTACATACT
*
18452975 TATATACTTTATATTATATACT
1 TATATACTTTATATTACATACT
18452997 TATATACTTTAT
1 TATATACTTTAT
18453009 TCTTTATAAT
Statistics
Matches: 185, Mismatches: 18, Indels: 50
0.73 0.07 0.20
Matches are distributed among these distances:
16 3 0.02
17 9 0.05
18 4 0.02
19 6 0.03
20 15 0.08
21 23 0.12
22 76 0.41
23 28 0.15
24 8 0.04
25 8 0.04
26 1 0.01
27 4 0.02
ACGTcount: A:0.37, C:0.08, G:0.01, T:0.54
Consensus pattern (22 bp):
TATATACTTTATATTACATACT
Found at i:18452795 original size:7 final size:7
Alignment explanation
Indices: 18452780--18453914 Score: 120
Period size: 7 Copynumber: 157.1 Consensus size: 7
18452770 CATATAATAC
18452780 TTATATA
1 TTATATA
*
18452787 TTTTATA
1 TTATATA
18452794 TTATATA
1 TTATATA
18452801 CTTATATA
1 -TTATATA
18452809 CTT-TATA
1 -TTATATA
* *
18452816 TTACATGC
1 TTATAT-A
18452824 TTATATA
1 TTATATA
* * *
18452831 CTTTTGTC
1 -TTATATA
18452839 TT-TATAA
1 TTATAT-A
18452846 TTATA-A
1 TTATATA
18452852 TTTATATA
1 -TTATATA
18452860 TATATATA
1 T-TATATA
*
18452868 TAATATA
1 TTATATA
18452875 CTTATACT-
1 -TTATA-TA
18452883 TTATATTA
1 TTATA-TA
18452891 TTATATA
1 TTATATA
18452898 TGTATATATA
1 --T-TATATA
*
18452908 TTTTATA
1 TTATATA
18452915 CTTATACT-
1 -TTATA-TA
18452923 TTATATA
1 TTATATA
*
18452930 TATATACA
1 T-TATATA
18452938 TT-TATA
1 TTATATA
18452944 CTT-TATA
1 -TTATATA
*
18452951 TT-CATA
1 TTATATA
18452957 TTATATA
1 TTATATA
18452964 CTTAATATA
1 -TT-ATATA
18452973 CTTATATA
1 -TTATATA
18452981 CTT-TATA
1 -TTATATA
18452988 TTATATA
1 TTATATA
18452995 CTTATATA
1 -TTATATA
18453003 CTT-TAT-
1 -TTATATA
*
18453009 TCTTTATAA
1 T-TATAT-A
18453018 TTATACT-
1 TTATA-TA
18453025 TTATATA
1 TTATATA
18453032 TATAATATA
1 T-T-ATATA
18453041 CTTATATA
1 -TTATATA
18453049 -T-TAT-
1 TTATATA
18453053 TTATATA
1 TTATATA
18453060 TGTATATA
1 T-TATATA
18453068 -TATATA
1 TTATATA
18453074 -TATA-A
1 TTATATA
18453079 TT-TATA
1 TTATATA
18453085 GTTTATATA
1 --TTATATA
18453094 TTGA-A-A
1 TT-ATATA
*
18453100 ATATATAA
1 TTATAT-A
18453108 TT-TATAA
1 TTATAT-A
*
18453115 TTATACA
1 TTATATA
*
18453122 TAATATA
1 TTATATA
*
18453129 TAAATATAA
1 T-TATAT-A
18453138 GCTGTATATA
1 --T-TATATA
18453148 TCTAAATATAA
1 T-T--ATAT-A
18453159 TTCATATA
1 TT-ATATA
* *
18453167 TAATTTA
1 TTATATA
*
18453174 TATATAAA
1 T-TATATA
*
18453182 CTATATAA
1 TTATAT-A
18453190 TT-TATA
1 TTATATA
*
18453196 TTAATAAA
1 TT-ATATA
* *
18453204 CTATACA
1 TTATATA
18453211 GTT-TATA
1 -TTATATA
18453218 -TATA-A
1 TTATATA
18453223 TTCA-ATA
1 TT-ATATA
18453230 GTTCATATA
1 -TT-ATATA
* *
18453239 -TAAACA
1 TTATATA
*
18453245 CTATAGT-
1 TTATA-TA
*
18453252 TTATACA
1 TTATATA
**
18453259 TGGTAT-
1 TTATATA
*
18453265 GTATAGT-
1 TTATA-TA
*
18453272 TTATACA
1 TTATATA
18453279 -TA-ATA
1 TTATATA
18453284 -TATATA
1 TTATATA
* *
18453290 TTGTTTA
1 TTATATA
18453297 -TATATA
1 TTATATA
*
18453303 GTATATAA
1 TTATAT-A
*
18453311 TAATATAA
1 TTATAT-A
* *
18453319 ATATAAA
1 TTATATA
*
18453326 CTATATA
1 TTATATA
18453333 GTT-TATA
1 -TTATATA
18453340 -TATATA
1 TTATATA
*
18453346 -TACATA
1 TTATATA
18453352 CTTATACT-
1 -TTATA-TA
*
18453360 TTATATG
1 TTATATA
18453367 TATATATA
1 T-TATATA
*
18453375 CTT-TTTA
1 -TTATATA
18453382 TTATATA
1 TTATATA
18453389 CTTATATA
1 -TTATATA
*
18453397 CTT-TAGTC
1 -TTATA-TA
18453405 TT-TATAA
1 TTATAT-A
18453412 TTATACT-
1 TTATA-TA
18453419 TTATAT-
1 TTATATA
18453425 TTA-ATA
1 TTATATA
18453431 CTTATATA
1 -TTATATA
18453439 CTT-TATA
1 -TTATATA
18453446 TTAT-TA
1 TTATATA
*
18453452 -TATACA
1 TTATATA
18453458 TATATATA
1 T-TATATA
18453466 CTT-TATA
1 -TTATATA
18453473 TT-TAATA
1 TTAT-ATA
*
18453480 GTTTTATA
1 -TTATATA
*
18453488 TTTTATA
1 TTATATA
18453495 TTATATA
1 TTATATA
18453502 CTTATATA
1 -TTATATA
18453510 CTT-TATA
1 -TTATATA
*
18453517 TTATATGC
1 TTATAT-A
*
18453525 TTATATT
1 TTATATA
* *
18453532 TTTTAGTC
1 TTATA-TA
18453540 TT-TATAA
1 TTATAT-A
18453547 TTATACT-
1 TTATA-TA
18453554 TTATATA
1 TTATATA
18453561 -TATATA
1 TTATATA
18453567 TATATATA
1 T-TATATA
18453575 TATATATA
1 T-TATATA
18453583 TATATATA
1 T-TATATA
*
18453591 TTATATG
1 TTATATA
18453598 TATATATA
1 T-TATATA
18453606 GTT-TATA
1 -TTATATA
* *
18453613 TTCTTTA
1 TTATATA
18453620 TGTATATA
1 T-TATATA
18453628 TATAATATA
1 T-T-ATATA
*
18453637 ATATATA
1 TTATATA
*
18453644 GTCTTTATA
1 -T-TATATA
* *
18453653 -AAGAATA
1 TTA-TATA
18453660 TT-TATA
1 TTATATA
18453666 -TATACT-
1 TTATA-TA
18453672 TTATATA
1 TTATATA
*
18453679 CTTAAATA
1 -TTATATA
*
18453687 CTT-TTTA
1 -TTATATA
18453694 TTATATA
1 TTATATA
*
18453701 CTAATATA
1 -TTATATA
*
18453709 CTT-TAGTC
1 -TTATA-TA
18453717 TT-TATAA
1 TTATAT-A
18453724 TTATACT-
1 TTATA-TA
*
18453731 TTATATT
1 TTATATA
18453738 TTA-ATA
1 TTATATA
18453744 CTTATATA
1 -TTATATA
18453752 CTT-TATA
1 -TTATATA
18453759 TTAT-TA
1 TTATATA
*
18453765 -TATACA
1 TTATATA
18453771 TGTATATA
1 T-TATATA
18453779 CTT-TATA
1 -TTATATA
18453786 TT-TAATA
1 TTAT-ATA
*
18453793 CTTTTATA
1 -TTATATA
*
18453801 TTTTATA
1 TTATATA
18453808 TTATATA
1 TTATATA
18453815 CTTATATA
1 -TTATATA
18453823 CTT-TATA
1 -TTATATA
*
18453830 TTATATGC
1 TTATAT-A
18453838 TTATATA
1 TTATATA
*
18453845 CTT-TAGTC
1 -TTATA-TA
18453853 TTATA-A
1 TTATATA
18453859 TTATACT-
1 TTATA-TA
18453866 TTATATA
1 TTATATA
*
18453873 TATAACATA
1 T-T-ATATA
*
18453882 CTTATA-C
1 -TTATATA
18453889 TT-TATA
1 TTATATA
18453895 TTATATA
1 TTATATA
18453902 -TATATA
1 TTATATA
18453908 -TATATA
1 TTATATA
18453914 T
1 T
18453915 AATTTATAGT
Statistics
Matches: 853, Mismatches: 119, Indels: 312
0.66 0.09 0.24
Matches are distributed among these distances:
5 27 0.03
6 141 0.17
7 326 0.38
8 282 0.33
9 56 0.07
10 14 0.02
11 7 0.01
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.52
Consensus pattern (7 bp):
TTATATA
Found at i:18452981 original size:37 final size:39
Alignment explanation
Indices: 18452931--18453005 Score: 111
Period size: 37 Copynumber: 2.0 Consensus size: 39
18452921 CTTTATATAT
18452931 ATATACATTTATACTTTATATT-CATA-TTATATACTTA
1 ATATACATTTATACTTTATATTACATACTTATATACTTA
*
18452968 ATATAC-TTATATACTTTATATTATATACTTATATACTT
1 ATATACATT-TATACTTTATATTACATACTTATATACTT
18453006 TATTCTTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
36 2 0.06
37 19 0.56
38 3 0.09
39 10 0.29
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (39 bp):
ATATACATTTATACTTTATATTACATACTTATATACTTA
Found at i:18452981 original size:66 final size:65
Alignment explanation
Indices: 18452853--18453084 Score: 214
Period size: 68 Copynumber: 3.5 Consensus size: 65
18452843 TAATTATAAT
* *
18452853 TTATATATATATATATAATATAC--TTATACTTTATA-T-TATTATATATGTATATATA-TTTTA
1 TTATATAT-TATATAT-ATATACATTTATACTTTATATTATATTATATATATA-ATATACTTATA
18452913 TAC
63 TAC
18452916 TTATACT-TTATATATATATACATTTATACTTTATATTCATATTATATACT-TAATATACTTATA
1 TTATA-TATTATATATATATACATTTATACTTTATATT-ATATTATATA-TATAATATACTTATA
18452979 TAC
63 TAC
*
18452982 TT-TATATTATATACTTATATAC-TTTATTCTTTATAATTATACTTTATATATATAATATACTTA
1 TTATATATTATATA--TATATACATTTATACTTTAT-ATTATA--TTATATATATAATATACTTA
18453045 TATA-
61 TATAC
* * * * *
18453049 TTATTTATATATGTATATATATATATATAATTTATA
1 TTATATAT-TATATATATATACATTTATACTTTATA
18453085 GTTTATATAT
Statistics
Matches: 143, Mismatches: 8, Indels: 32
0.78 0.04 0.17
Matches are distributed among these distances:
61 6 0.04
62 7 0.05
63 18 0.13
64 3 0.02
65 14 0.10
66 34 0.24
67 21 0.15
68 35 0.24
69 5 0.03
ACGTcount: A:0.39, C:0.06, G:0.01, T:0.54
Consensus pattern (65 bp):
TTATATATTATATATATATACATTTATACTTTATATTATATTATATATATAATATACTTATATAC
Found at i:18453013 original size:29 final size:29
Alignment explanation
Indices: 18452902--18453031 Score: 144
Period size: 29 Copynumber: 4.5 Consensus size: 29
18452892 TATATATGTA
*
18452902 TATATA-TTTTATAC-TTATACTTTATAT
1 TATATACTTATATACTTTATACTTTATAT
*
18452929 ATATATACATT-TATACTTTATA-TTCATAT
1 -TATATAC-TTATATACTTTATACTTTATAT
18452958 TATATACTTAATATACTTATATACTTTATAT
1 TATATACTT-ATATACTT-TATACTTTATAT
* *
18452989 TATATACTTATATACTTTATTCTTTATAA
1 TATATACTTATATACTTTATACTTTATAT
18453018 T-TATACTTTATATA
1 TATATAC-TTATATA
18453032 TATAATATAC
Statistics
Matches: 90, Mismatches: 4, Indels: 15
0.83 0.04 0.14
Matches are distributed among these distances:
27 2 0.02
28 18 0.20
29 36 0.40
30 19 0.21
31 15 0.17
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (29 bp):
TATATACTTATATACTTTATACTTTATAT
Found at i:18453016 original size:22 final size:22
Alignment explanation
Indices: 18452753--18453030 Score: 126
Period size: 22 Copynumber: 12.9 Consensus size: 22
18452743 CATACATACA
* *
18452753 TATATATATATACTTTACAT-AT
1 TATAT-TATATACTTTATATCTT
* * *
18452775 AATACTTATATATTTTATAT-TA
1 TATA-TTATATACTTTATATCTT
*
18452797 TATACTTATATACTTTATAT-TA
1 TATA-TTATATACTTTATATCTT
* * *
18452819 CATGCTTATATACTTT-TGTCTT
1 TAT-ATTATATACTTTATATCTT
*
18452841 TATAATTATA-A-TTTATATATAT
1 TAT-ATTATATACTTTATATCT-T
*
18452863 ATATATAATATAC-TTATA-CTT
1 -TATATTATATACTTTATATCTT
* * * *
18452884 TATATTAT-TA-TATATGTATA
1 TATATTATATACTTTATATCTT
*
18452904 TATATTTTATAC-TTATA-CTT
1 TATATTATATACTTTATATCTT
18452924 TATATATATATACATTTATA-CTT
1 TATAT-TATATAC-TTTATATCTT
*
18452947 TATATT-CATA--TTATATACTT
1 TATATTATATACTTTATAT-CTT
*
18452967 AATATACTTATATACTTTATAT-TA
1 --TATA-TTATATACTTTATATCTT
18452991 TATACTTATATACTTTAT-TCTT
1 TATA-TTATATACTTTATATCTT
*
18453013 TATAAT-TATACTTTATAT
1 TATATTATATACTTTATAT
18453031 ATATAATATA
Statistics
Matches: 197, Mismatches: 34, Indels: 51
0.70 0.12 0.18
Matches are distributed among these distances:
18 5 0.03
19 5 0.03
20 37 0.19
21 24 0.12
22 91 0.46
23 25 0.13
24 4 0.02
26 6 0.03
ACGTcount: A:0.37, C:0.08, G:0.01, T:0.54
Consensus pattern (22 bp):
TATATTATATACTTTATATCTT
Found at i:18453074 original size:27 final size:27
Alignment explanation
Indices: 18453019--18453084 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
18453009 TCTTTATAAT
*
18453019 TATACTTTATATATATAATATACTTATA
1 TATAATTTATATATATAATATAC-TATA
* *
18453047 TATTATTTATATATGTATATATA-TATA
1 TATAATTTATATATATA-ATATACTATA
18453074 TATAATTTATA
1 TATAATTTATA
18453085 GTTTATATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 14 0.42
28 14 0.42
29 5 0.15
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (27 bp):
TATAATTTATATATATAATATACTATA
Found at i:18453094 original size:2 final size:2
Alignment explanation
Indices: 18452854--18453077 Score: 72
Period size: 2 Copynumber: 115.0 Consensus size: 2
18452844 AATTATAATT
*
18452854 TA TA TA TA TA TA TA TA -A TA TA CT- TA TA CTT TA TA T- TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA
* * *
18452894 TA TA TG TA TA TA TA T- TT TA TA CT- TA TA CTT TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA
* * *
18452936 CA TT TA TA CTT TA TA T- TCA TA T- TA TA TA CT- TA -A TA TA CT-
1 TA TA TA TA -TA TA TA TA T-A TA TA TA TA TA -TA TA TA TA TA -TA
* * * *
18452975 TA TA TA CTT TA TA T- TA TA TA CT- TA TA TA CTT TA T- TC TT TA
1 TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA
* *
18453015 TA -A T- TA TA CTT TA TA TA TA TA -A TA TA CT- TA TA TA T- TA TT
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
*
18453054 TA TA TA TG TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
18453078 ATTTATAGTT
Statistics
Matches: 165, Mismatches: 25, Indels: 64
0.65 0.10 0.25
Matches are distributed among these distances:
1 19 0.12
2 133 0.81
3 13 0.08
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.54
Consensus pattern (2 bp):
TA
Found at i:18453094 original size:36 final size:36
Alignment explanation
Indices: 18453026--18453198 Score: 99
Period size: 36 Copynumber: 4.8 Consensus size: 36
18453016 AATTATACTT
* *
18453026 TATATATATA-ATATACTTATATATTATTTATATATG
1 TATATATATATATATAATTATATATTATATATAT-TG
18453062 TATATATATATATATAATT-TATAGTT-TATATATTG
1 TATATATATATATATAATTATATA-TTATATATATTG
* * * * * **
18453097 AAAATATATAATTTATAATTATACATAATATATA-AA
1 TATATATAT-ATATATAATTATATATTATATATATTG
* * *
18453133 TATAAGCTGTATATATCTAAATATA-ATTCATATATAATT-
1 TAT-A--TATATATATATAATTATATATT-ATATAT-ATTG
*
18453172 TATATATAAACTATATAATT-TATATTA
1 TATATATATA-TATATAATTATATATTA
18453199 ATAAACTATA
Statistics
Matches: 103, Mismatches: 21, Indels: 26
0.69 0.14 0.17
Matches are distributed among these distances:
35 9 0.09
36 38 0.37
37 31 0.30
38 17 0.17
39 8 0.08
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (36 bp):
TATATATATATATATAATTATATATTATATATATTG
Found at i:18453180 original size:22 final size:22
Alignment explanation
Indices: 18453066--18453517 Score: 93
Period size: 22 Copynumber: 21.2 Consensus size: 22
18453056 TATATGTATA
* *
18453066 TATATATATATA-ATTTATAGTT
1 TATATATA-ATACATATATAATT
18453088 TATATATTGAA-A-ATATATAATT
1 TATATA-T-AATACATATATAATT
* *
18453110 TATA-ATTATACATA-AT-ATA
1 TATATATAATACATATATAATT
* * * *
18453129 TAAATATAA-GC-TGTATATATC
1 TATATATAATACATATATA-ATT
* *
18453150 TAAATATAATTCATATATAATT
1 TATATATAATACATATATAATT
18453172 TATATATAA-AC-TATATAATT
1 TATATATAATACATATATAATT
* * *
18453192 TATAT-TAATAAACTATACAGTT
1 TATATATAATACA-TATATAATT
* *
18453214 TATATATAATTC--A-ATAGTT
1 TATATATAATACATATATAATT
* * *
18453233 CATATATAA-ACA-CTATAGTT
1 TATATATAATACATATATAATT
* ** * *
18453253 TATACATGGT--ATGTATAGTT
1 TATATATAATACATATATAATT
* * **
18453273 TATACATAATATATATATTGTT
1 TATATATAATACATATATAATT
* * *
18453295 TATATATAGTATATA-ATAATA
1 TATATATAATACATATATAATT
* *
18453316 TAAATATAA-AC-TATATAGTT
1 TATATATAATACATATATAATT
*
18453336 TATATATATATACATACTTATACTT
1 TATATATA-ATACATA--TATAATT
* *
18453361 TATATGT-AT--ATATACT-TTT
1 TATATATAATACATATA-TAATT
* *
18453380 TAT-TAT-ATACTTATATACTT
1 TATATATAATACATATATAATT
* * *
18453400 TAGTCT-TTATA-AT-TATACTT
1 TA-TATATAATACATATATAATT
* * *
18453420 TATATTTAATACTTATATACTT
1 TATATATAATACATATATAATT
18453442 TATATTATTATATACATATATATACTT
1 TATA-TA-TA-ATACATATATA-A-TT
* ** * *
18453469 TATATTTAATAGTTTTATATTT
1 TATATATAATACATATATAATT
* *
18453491 TATAT-TATATACTTATATACTT
1 TATATATA-ATACATATATAATT
18453513 TATAT
1 TATAT
18453518 TATATGCTTA
Statistics
Matches: 324, Mismatches: 64, Indels: 84
0.69 0.14 0.18
Matches are distributed among these distances:
18 6 0.02
19 38 0.12
20 83 0.26
21 36 0.11
22 103 0.32
23 16 0.05
24 11 0.03
25 24 0.07
26 1 0.00
27 6 0.02
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (22 bp):
TATATATAATACATATATAATT
Found at i:18453186 original size:20 final size:20
Alignment explanation
Indices: 18453163--18453222 Score: 84
Period size: 20 Copynumber: 2.9 Consensus size: 20
18453153 ATATAATTCA
18453163 TATATAATTTATATATAAAC
1 TATATAATTTATATATAAAC
18453183 TATATAATTTATATTAATAAAC
1 TATATAATTTATA-T-ATAAAC
* *
18453205 TATACAGTTTATATATAA
1 TATATAATTTATATATAA
18453223 TTCAATAGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
20 17 0.47
21 2 0.06
22 17 0.47
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (20 bp):
TATATAATTTATATATAAAC
Found at i:18453289 original size:20 final size:20
Alignment explanation
Indices: 18453246--18453309 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
18453236 ATATAAACAC
* *
18453246 TATAGTTTATACATGGTATG
1 TATAGTTTATACATAGTATA
*
18453266 TATAGTTTATACATAATATA
1 TATAGTTTATACATAGTATA
*
18453286 TATATTGTTTATATATAGTATA
1 TATA--GTTTATACATAGTATA
18453308 TA
1 TA
18453310 ATAATATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 21 0.57
22 16 0.43
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.48
Consensus pattern (20 bp):
TATAGTTTATACATAGTATA
Found at i:18453363 original size:25 final size:24
Alignment explanation
Indices: 18453313--18453372 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
18453303 GTATATAATA
* *
18453313 ATATAAATATAAACTATATAGTTT
1 ATATATATATAAACTATATACTTT
18453337 ATATATATATACATACT-TATACTTT
1 ATATATATATA-A-ACTATATACTTT
*
18453362 ATATGTATATA
1 ATATATATATA
18453373 TACTTTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.32
25 18 0.58
26 3 0.10
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (24 bp):
ATATATATATAAACTATATACTTT
Found at i:18453374 original size:17 final size:16
Alignment explanation
Indices: 18453354--18453631 Score: 92
Period size: 15 Copynumber: 18.2 Consensus size: 16
18453344 TATACATACT
18453354 TATACTTTATATGTATA
1 TATACTTTATAT-TATA
*
18453371 TATACTTTTTA-T-TA
1 TATACTTTATATTATA
18453385 TATACTTATATACTT-TA
1 TATACTT-TATA-TTATA
*
18453402 -GT-CTTTATA--AT-
1 TATACTTTATATTATA
18453413 TATACTTTATATT-TA
1 TATACTTTATATTATA
18453428 -ATACTTATATACTT-TA
1 TATACTT-TATA-TTATA
*
18453444 TATTA-TTATATACATATA
1 TA-TACTT-TATA-TTATA
18453462 TATACTTTATATT-TA
1 TATACTTTATATTATA
*
18453477 -ATAGTTTTATATT-T-
1 TATA-CTTTATATTATA
*
18453491 TATA-TTATATACT-TA
1 TATACTT-TATATTATA
18453506 TATACTTTATA-T-TA
1 TATACTTTATATTATA
* * *
18453520 TATGC-TTATATTTTT
1 TATACTTTATATTATA
18453535 TAGT-CTTTATA--AT-
1 TA-TACTTTATATTATA
18453548 TATACTTTATATATATA
1 TATACTTTATAT-TATA
*
18453565 TATA-TATATATATATA
1 TATACTTTATAT-TATA
*
18453581 TATA-TATATATTATA
1 TATACTTTATATTATA
* *
18453596 TGTA-TATATAGTT-TA
1 TATACTTTATA-TTATA
* *
18453611 TATTCTTTATGTATATA
1 TATACTTTATAT-TATA
18453628 TATA
1 TATA
18453632 ATATAATATA
Statistics
Matches: 210, Mismatches: 18, Indels: 66
0.71 0.06 0.22
Matches are distributed among these distances:
12 3 0.01
13 23 0.11
14 38 0.18
15 55 0.26
16 45 0.21
17 38 0.18
18 8 0.04
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (16 bp):
TATACTTTATATTATA
Found at i:18453432 original size:42 final size:46
Alignment explanation
Indices: 18453368--18453922 Score: 306
Period size: 44 Copynumber: 12.4 Consensus size: 46
18453358 CTTTATATGT
* *
18453368 ATATATACTTTTTA-TTATATACTTATATACTTTAGTCTT-TATA-
1 ATATATACTTTATATTTATATACTTATATACTTTAGTATTATATAC
*
18453411 AT-TATACTTTATATTTA-ATACTTATATACTTTATATTATTATATAC
1 ATATATACTTTATATTTATATACTTATATAC-TT-TAGTATTATATAC
* * *
18453457 ATATATATACTTTATATTTA-ATAGTTTTATATTTTA-TATTATATAC
1 --ATATATACTTTATATTTATATACTTATATACTTTAGTATTATATAC
* * ** *
18453503 TTATATACTTTATA-TTATATGCTTATATTTTTTAGTCTT-TATA-
1 ATATATACTTTATATTTATATACTTATATACTTTAGTATTATATAC
* *
18453546 AT-TATACTTTATA--TATATA--TATATA-TATA-TA-TATATAT
1 ATATATACTTTATATTTATATACTTATATACTTTAGTATTATATAC
* *
18453584 ATATATA--TTATATGTATATATAGTTTATATTCTTTATGTATATATATA-
1 ATATATACTTTATAT-T-TATATA-CTTATATACTTTA-GTAT-TATATAC
* * * ** * *
18453632 ATATAATA-TATAGTCTTTATAAAGAATATTTA-TATA-TACTTTATATAC
1 ATAT-ATACTTTA-TATTTATATA-CTTATATACTTTAGTA--TTATATAC
* * * * *
18453680 TTAAATACTTTTTA-TTATATACTAATATACTTTAGTCTT-TATA-
1 ATATATACTTTATATTTATATACTTATATACTTTAGTATTATATAC
*
18453723 AT-TATACTTTATATTT-TAATACTTATATACTTTATATTATTATATAC
1 ATATATACTTTATATTTAT-ATACTTATATAC-TT-TAGTATTATATAC
* *
18453770 ATGTATATACTTTATATTTA-ATACTTTTATATTTTA-TATTATATAC
1 A--TATATACTTTATATTTATATACTTATATACTTTAGTATTATATAC
* * *
18453816 TTATATACTTTATA-TTATATGCTTATATACTTTAGT-CT-TATA-
1 ATATATACTTTATATTTATATACTTATATACTTTAGTATTATATAC
* * *
18453858 AT-TATACTTTATATATATA-ACATACTTATACTTTA-TATTATATAT
1 ATATATACTTTATATTTATATACTTA--TATACTTTAGTATTATATAC
*
18453903 ATATATA-TATATAATTTATA
1 ATATATACTTTAT-ATTTATA
18453923 GTTTTTATAG
Statistics
Matches: 399, Mismatches: 59, Indels: 105
0.71 0.10 0.19
Matches are distributed among these distances:
36 1 0.00
37 10 0.03
38 5 0.01
39 9 0.02
41 25 0.06
42 49 0.12
43 42 0.11
44 76 0.19
45 28 0.07
46 45 0.11
47 18 0.05
48 18 0.05
49 54 0.14
50 17 0.04
51 2 0.01
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (46 bp):
ATATATACTTTATATTTATATACTTATATACTTTAGTATTATATAC
Found at i:18453518 original size:22 final size:22
Alignment explanation
Indices: 18453369--18453909 Score: 193
Period size: 22 Copynumber: 25.3 Consensus size: 22
18453359 TTTATATGTA
*
18453369 TATATACTTTTTATTATATACT
1 TATATACTTTATATTATATACT
* *
18453391 TATATACTTTAGTCTT-TATA-A
1 TATATACTTTA-TATTATATACT
18453412 T-TATACTTTATATT-TAATACT
1 TATATACTTTATATTAT-ATACT
18453433 TATATACTTTATATTATTATATACAT
1 TATATAC-TT-TA-TATTATATAC-T
*
18453459 ATATATACTTTATATT-TAATAGT
1 -TATATACTTTATATTAT-ATACT
* *
18453482 TTTATATTTTATATTATATACT
1 TATATACTTTATATTATATACT
*
18453504 TATATACTTTATATTATATGCT
1 TATATACTTTATATTATATACT
** * *
18453526 TATATTTTTTAGTCTT-TATA-A
1 TATATACTTTA-TATTATATACT
18453547 T-TATACTTTATA-TATATA--
1 TATATACTTTATATTATATACT
*
18453565 TATATA-TATATA-TATATA-T
1 TATATACTTTATATTATATACT
* *
18453584 ATATATA-TTATATGTATATATAGTT
1 -TATATACTT-TATAT-TATATA-CT
* *
18453609 TATATTCTTTATGTATATATA-T
1 TATATACTTTATAT-TATATACT
* * * * **
18453631 AATATAATATATAGTCTTTATAAA
1 TATATACTTTATA-T-TATATACT
*
18453655 GA-ATA--TT-TA-TATATACTT
1 TATATACTTTATATTATATAC-T
* *
18453673 TATATACTTAAATACTT-TTTA-T
1 TATATACTT-TATA-TTATATACT
18453695 TATATAC----TA--ATATACT
1 TATATACTTTATATTATATACT
18453711 T-TAGT-CTTTATAATTATACT--T
1 TATA-TACTTTAT-ATTATA-TACT
* *
18453732 TATAT-TTTAATACTTATATACT
1 TATATACTTTATA-TTATATACT
18453754 T-TATA-T---TATTATATACAT
1 TATATACTTTATATTATATAC-T
18453772 GTATATACTTTATATT-TAATACT
1 -TATATACTTTATATTAT-ATACT
* *
18453795 TTTATATTTTATATTATATACT
1 TATATACTTTATATTATATACT
*
18453817 TATATACTTTATATTATATGCT
1 TATATACTTTATATTATATACT
*
18453839 TATATACTTTAGTCTTATA-A--
1 TATATACTTTA-TATTATATACT
*
18453859 T-TATACTTTATA-TATATAACA
1 TATATACTTTATATTATAT-ACT
18453880 TACTTATACTTTATATTATATA-T
1 TA--TATACTTTATATTATATACT
18453903 ATATATA
1 -TATATA
18453910 TATATAATTT
Statistics
Matches: 399, Mismatches: 52, Indels: 136
0.68 0.09 0.23
Matches are distributed among these distances:
15 6 0.02
16 3 0.01
17 19 0.05
18 18 0.05
19 28 0.07
20 36 0.09
21 26 0.07
22 143 0.36
23 38 0.10
24 52 0.13
25 19 0.05
26 4 0.01
27 7 0.02
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (22 bp):
TATATACTTTATATTATATACT
Found at i:18453562 original size:2 final size:2
Alignment explanation
Indices: 18453555--18453643 Score: 96
Period size: 2 Copynumber: 46.0 Consensus size: 2
18453545 AATTATACTT
18453555 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
18453596 TG TA TA TA TA GTT TA TA T- TC TT TA TG TA TA TA TA TA -A TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18453637 -A TA TA TA
1 TA TA TA TA
18453644 GTCTTTATAA
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
1 4 0.05
2 69 0.93
3 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18453630 original size:135 final size:135
Alignment explanation
Indices: 18453369--18453636 Score: 323
Period size: 135 Copynumber: 2.0 Consensus size: 135
18453359 TTTATATGTA
* *
18453369 TATATACTTTTTATTATATACTTATATACTTTAGTCTTTATAATTATACTTTATATTTAATACTT
1 TATATACTTTATATTATATACTTATATACTTTAGTCTTTATAATTATACTTTATATATAATACTT
* * * *
18453434 ATATACTTTATATTATTATATACATATATATACTTTATATTTAATAGTTTTATATTTTATATTAT
66 ATATACTATATATTATTATATACATATATATACTATATATTTAATAGTTTTATATTATATATAAT
18453499 ATACT
131 ATACT
* **
18453504 TATATACTTTATATTATATGCTTATATTTTTTAGTCTTTATAATTATACTTTATATAT-ATA-TA
1 TATATACTTTATATTATATACTTATATACTTTAGTCTTTATAATTATACTTTATATATAATACT-
* * * *
18453567 TATATA-TATATATATATATATATA-TTATATGTA-TATATAGTTT-ATATTCTTTATGTATATA
65 TATATACTATATAT-TAT-TATATACATATATATACTATATA-TTTAATAGT-TTTATAT-TATA
18453628 TATAATATA
125 TATAATATA
18453637 ATATATAGTC
Statistics
Matches: 114, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
133 16 0.14
134 28 0.25
135 70 0.61
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (135 bp):
TATATACTTTATATTATATACTTATATACTTTAGTCTTTATAATTATACTTTATATATAATACTT
ATATACTATATATTATTATATACATATATATACTATATATTTAATAGTTTTATATTATATATAAT
ATACT
Found at i:18453694 original size:30 final size:29
Alignment explanation
Indices: 18453660--18453736 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
18453650 ATAAAGAATA
18453660 TTTATATATACTTTATATACTTAAATACTT
1 TTTATATATACTTTATATACTTAAAT-CTT
* * *
18453690 TTTATTATATAC-TAATATACTTTAGTCTT
1 TTTA-TATATACTTTATATACTTAAATCTT
*
18453719 TATA-ATTATACTTTATAT
1 TTTATA-TATACTTTATAT
18453737 TTTAATACTT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 1 0.03
28 5 0.13
29 11 0.28
30 15 0.38
31 7 0.18
ACGTcount: A:0.35, C:0.09, G:0.01, T:0.55
Consensus pattern (29 bp):
TTTATATATACTTTATATACTTAAATCTT
Found at i:18453800 original size:313 final size:309
Alignment explanation
Indices: 18453354--18453930 Score: 955
Period size: 313 Copynumber: 1.9 Consensus size: 309
18453344 TATACATACT
* * *
18453354 TATACTTTATATGTATATATACTTTTTATTATATACTTATATACTTTAGTCTTTATAATTATACT
1 TATACTTTATATCTATAAATACTTTTTATTATATACTAATATACTTTAGTCTTTATAATTATACT
*
18453419 TTATATTTAATACTTATATACTTTATATTATTATATACATATATATACTTTATATTTAATAGTTT
66 TTATATTTAATACTTATATACTTTATATTATTATATACATATATATACTTTATATTTAATACTTT
**
18453484 TATATTTTATATTATATACTTATATACTTTATATTATATGCTTATATTTTTTAGTCTTTATAATT
131 TATATTTTATATTATATACTTATATACTTTATATTATATGCTTATATACTTTAGTC-TTATAATT
* * *
18453549 ATACTTTATATATATATATATA-TATATA-TATATATATATATATTATATGTATATATAGTTTAT
195 ATACTTTATATATATA-ACATACT-TATACTATATAT-TATATA-TATATATATATATAATTTAT
18453612 A-TTCTTTATGTATATATATAATATAATATATAGTCTTTATAAAGAATATTTATA
256 AGTT-TTTATGTATATATATAATATAATATATAGTCTTTATAAAGAATATTTATA
18453666 TATACTTTATATACT-TAAATACTTTTTATTATATACTAATATACTTTAGTCTTTATAATTATAC
1 TATACTTTATAT-CTATAAATACTTTTTATTATATACTAATATACTTTAGTCTTTATAATTATAC
*
18453730 TTTATATTTTAATACTTATATACTTTATATTATTATATACATGTATATACTTTATATTTAATACT
65 TTTATA-TTTAATACTTATATACTTTATATTATTATATACATATATATACTTTATATTTAATACT
18453795 TTTATATTTTATATTATATACTTATATACTTTATATTATATGCTTATATACTTTAGTCTTATAAT
129 TTTATATTTTATATTATATACTTATATACTTTATATTATATGCTTATATACTTTAGTCTTATAAT
*
18453860 TATACTTTATATATATAACATACTTATACTTTATATTATATATATATATATATATAATTTATAGT
194 TATACTTTATATATATAACATACTTATACTATATATTATATATATATATATATATAATTTATAGT
18453925 TTTTAT
259 TTTTAT
18453931 AGACACTTAT
Statistics
Matches: 249, Mismatches: 11, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
310 24 0.10
311 16 0.06
312 96 0.39
313 113 0.45
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (309 bp):
TATACTTTATATCTATAAATACTTTTTATTATATACTAATATACTTTAGTCTTTATAATTATACT
TTATATTTAATACTTATATACTTTATATTATTATATACATATATATACTTTATATTTAATACTTT
TATATTTTATATTATATACTTATATACTTTATATTATATGCTTATATACTTTAGTCTTATAATTA
TACTTTATATATATAACATACTTATACTATATATTATATATATATATATATATAATTTATAGTTT
TTATGTATATATATAATATAATATATAGTCTTTATAAAGAATATTTATA
Found at i:18453825 original size:136 final size:137
Alignment explanation
Indices: 18453672--18453922 Score: 375
Period size: 136 Copynumber: 1.8 Consensus size: 137
18453662 TATATATACT
*
18453672 TTATATACTTAAATACTTTTTATTATATACTAATATACTTTAGTCTTTATAATTATACTTTATAT
1 TTATATACTTAAATACTTTATATTATATACTAATATACTTTAGTC-TTATAATTATACTTTATAT
* * *
18453737 -T-TTA-ATACTTATATACTTTATATTAT-TATATACATGTATATACTTTATATTTAATACTTTT
65 ATATAACATAC-T-TATACTTTATATTATATATATACATATATATAATTTATATTTAATACTTTT
18453798 ATATTTTATA
128 ATATTTTATA
* * *
18453808 TTATATACTTATATACTTTATATTATATGCTTATATACTTTAGTCTTATAATTATACTTTATATA
1 TTATATACTTAAATACTTTATATTATATACTAATATACTTTAGTCTTATAATTATACTTTATATA
*
18453873 TATAACATACTTATACTTTATATTATATATATATATATATATAATTTATA
66 TATAACATACTTATACTTTATATTATATATATACATATATATAATTTATA
18453923 GTTTTTATAG
Statistics
Matches: 103, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
135 19 0.18
136 57 0.55
137 23 0.22
138 4 0.04
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (137 bp):
TTATATACTTAAATACTTTATATTATATACTAATATACTTTAGTCTTATAATTATACTTTATATA
TATAACATACTTATACTTTATATTATATATATACATATATATAATTTATATTTAATACTTTTATA
TTTTATA
Found at i:18458793 original size:37 final size:37
Alignment explanation
Indices: 18458752--18458829 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
18458742 ATATAATGGC
*
18458752 TTGAGTTCGAGTTACA-TTTAAATTTTCTGTTCGAATT
1 TTGAGTTCGAGTTA-AGTTTAAATTTTCTGTTCAAATT
*
18458789 TTGAGTTCGAGTTAAGTTTAAATTTTTTGTTCAAATT
1 TTGAGTTCGAGTTAAGTTTAAATTTTCTGTTCAAATT
18458826 TTGA
1 TTGA
18458830 ATCTTTAAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.26, C:0.08, G:0.17, T:0.50
Consensus pattern (37 bp):
TTGAGTTCGAGTTAAGTTTAAATTTTCTGTTCAAATT
Found at i:18460308 original size:82 final size:80
Alignment explanation
Indices: 18460200--18460462 Score: 211
Period size: 82 Copynumber: 3.2 Consensus size: 80
18460190 TTAGTAGTGT
* * * * * * *
18460200 TTTTATACAAACGTCATAATAAGGTTAATCTATAGTGGCGTTTTCAATAAACGTCACAAACAGAG
1 TTTTATACAAAAGCCGTAATAGGGTTAATCTATAGTGGCGTTTTAAATAAACGCCAC-AATAGAG
18460265 TAGTACTTTAGCGGCA
65 TAGTACTTTAGCGGCA
* ** * * * * * * *
18460281 TTGTTATACAAATGTTGTAATGGGGTTAGTATATAGTGACATTTTTTAACAAACGCCACAATAGA
1 TT-TTATACAAAAGCCGTAATAGGGTTAATCTATAGTGGC-GTTTTAAATAAACGCCACAATAGA
* * *
18460346 GTAGTAATTTAGTGACA
64 GTAGTACTTTAGCGGCA
* * * * *
18460363 TTTCTATACAAAAGCCGTAATAGGGTTCATCTATAATGGTGTTTTTTAAATAAATGCCGCAATAG
1 TTT-TATACAAAAGCCGTAATAGGGTTAATCTATAGTGGCG--TTTTAAATAAACGCCACAATAG
* *
18460428 AATAGTACTTTAGCGGCGT
63 AGTAGTACTTTAGCGGC-A
*
18460447 TTTTATACAAACGCCG
1 TTTTATACAAAAGCCG
18460463 CAATGAGTAA
Statistics
Matches: 139, Mismatches: 37, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
81 3 0.02
82 76 0.55
83 57 0.41
84 3 0.02
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.33
Consensus pattern (80 bp):
TTTTATACAAAAGCCGTAATAGGGTTAATCTATAGTGGCGTTTTAAATAAACGCCACAATAGAGT
AGTACTTTAGCGGCA
Found at i:18465761 original size:22 final size:22
Alignment explanation
Indices: 18465709--18465763 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
18465699 ATTCTTTCTG
*
18465709 TATGTTTTAGTCTTTATATGTA
1 TATGTTTTCGTCTTTATATGTA
18465731 TATGTTTTCGTCTTTATATGTA
1 TATGTTTTCGTCTTTATATGTA
18465753 TATGTTTTCGT
1 TATGTTTTCGT
18465764 TTTGGGTTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.18, C:0.07, G:0.15, T:0.60
Consensus pattern (22 bp):
TATGTTTTCGTCTTTATATGTA
Found at i:18468407 original size:19 final size:18
Alignment explanation
Indices: 18468368--18468412 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
18468358 ACTTTTGATA
* *
18468368 TTTATTATAAAGTTTATT
1 TTTATTTTAAAGTTAATT
18468386 TTTATTTTAAAGTCTAATT
1 TTTATTTTAAAGT-TAATT
18468405 TTTATTTT
1 TTTATTTT
18468413 TGAAATCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (18 bp):
TTTATTTTAAAGTTAATT
Found at i:18474816 original size:21 final size:21
Alignment explanation
Indices: 18474790--18474829 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18474780 CTTAGGTCTT
18474790 ATTTAAAGTTGGTTATTATTG
1 ATTTAAAGTTGGTTATTATTG
* *
18474811 ATTTAAAGTTTGTTGTTAT
1 ATTTAAAGTTGGTTATTAT
18474830 GGATGTTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (21 bp):
ATTTAAAGTTGGTTATTATTG
Found at i:18475222 original size:40 final size:42
Alignment explanation
Indices: 18475177--18475270 Score: 104
Period size: 43 Copynumber: 2.3 Consensus size: 42
18475167 GAAAAGAATA
* *
18475177 TAGTGGCGTTT-T-CAACAACGCCGCTAAATA-TCATAACCTT
1 TAGTGGCGTTTATGAAACAACGCCACTAAA-ACTCATAACCTT
* *
18475217 TAGTGGGGTTTATGGAAACAACGCCACTAAAACTCGTAACCTT
1 TAGTGGCGTTTAT-GAAACAACGCCACTAAAACTCATAACCTT
*
18475260 TAGCGGCGTTT
1 TAGTGGCGTTT
18475271 GCAGACAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
40 10 0.23
41 1 0.02
42 1 0.02
43 32 0.73
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (42 bp):
TAGTGGCGTTTATGAAACAACGCCACTAAAACTCATAACCTT
Found at i:18478789 original size:17 final size:18
Alignment explanation
Indices: 18478746--18478789 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
18478736 AAATATATAT
18478746 TAAAATAATTTTAAGAAA
1 TAAAATAATTTTAAGAAA
18478764 -AAAATAATTTTAA-AAGA
1 TAAAATAATTTTAAGAA-A
18478781 TAAAA-AATT
1 TAAAATAATT
18478790 GGTCTGCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 2 0.08
17 18 0.75
18 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (18 bp):
TAAAATAATTTTAAGAAA
Found at i:18480412 original size:17 final size:18
Alignment explanation
Indices: 18480392--18480428 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
18480382 GAATTTGGGC
18480392 CTGGACC-GGTTTTGGAT
1 CTGGACCGGGTTTTGGAT
18480409 CTGGACCGGGTTTTGGAT
1 CTGGACCGGGTTTTGGAT
18480427 CT
1 CT
18480429 TTGGTTTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.11, C:0.19, G:0.35, T:0.35
Consensus pattern (18 bp):
CTGGACCGGGTTTTGGAT
Found at i:18480974 original size:166 final size:166
Alignment explanation
Indices: 18480697--18481190 Score: 776
Period size: 166 Copynumber: 3.0 Consensus size: 166
18480687 ATAAAGATTA
* * * * *
18480697 AAAACATCCTACTCGAAGGTCTTACGGATGGCCCGTAGGACTTATCATCTTTGGGAAATAGTTTA
1 AAAACATCCTACCCGGAGGTTTTACGGATGGCCCGAAGAACTTATCATCTTTGGGAAATAGTTTA
* * *
18480762 CTGGGTAAGAAACTTTAGAAATCGCTTTCTTACTTTTCAGCAATTTCATTTTCTGAATATTAAAT
66 CTGGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAACAATTTCATTTTCTGAACATTAAAT
*
18480827 GAGAAACTTTGGTAATCGCTTTCTCATTTTCATGTG
131 GAGAAACTTTGATAATCGCTTTCTCATTTTCATGTG
18480863 AAAACATCCTACCCGGAGGTTTTACGGATGGCCCGAAGAACTTATCATCTTTGGGAAATAGTTTA
1 AAAACATCCTACCCGGAGGTTTTACGGATGGCCCGAAGAACTTATCATCTTTGGGAAATAGTTTA
**
18480928 CTGGGTAAGAAACTTTGGAAATATCTTTCTTACTTTTCAACAATTTCATTTTCTGAACATTAAAT
66 CTGGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAACAATTTCATTTTCTGAACATTAAAT
18480993 GAGAAACTTTGATAATCGCTTTCTCATTTTCATGTG
131 GAGAAACTTTGATAATCGCTTTCTCATTTTCATGTG
* *
18481029 AAAACATCCTACCCGGAGGTTTTACGAATGGCCCGAA-AGACTTATCATATTTGGGAAATAGTTT
1 AAAACATCCTACCCGGAGGTTTTACGGATGGCCCGAAGA-ACTTATCATCTTTGGGAAATAGTTT
* *
18481093 ACTGGGTAAGAAACTTTGGAAATCGGTTTCTTACTTTTCAACAATTTCATTTT-TGGAAAAGATT
65 ACTGGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAACAATTTCATTTTCT-G--AACATT
* **
18481157 AAATGAGAAACTTTGAAAATCTTTTTCTCATTTT
127 AAATGAGAAACTTTGATAATCGCTTTCTCATTTT
18481191 TCAAAACAAT
Statistics
Matches: 304, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
165 2 0.01
166 266 0.88
168 36 0.12
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (166 bp):
AAAACATCCTACCCGGAGGTTTTACGGATGGCCCGAAGAACTTATCATCTTTGGGAAATAGTTTA
CTGGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAACAATTTCATTTTCTGAACATTAAAT
GAGAAACTTTGATAATCGCTTTCTCATTTTCATGTG
Found at i:18482578 original size:73 final size:73
Alignment explanation
Indices: 18482480--18482643 Score: 247
Period size: 73 Copynumber: 2.2 Consensus size: 73
18482470 TATGGCCTCC
* * * *
18482480 CAAAATGCCCCAACATTTGCTGATACAAACGTTCAAAATGCGTTCAAAATTATTTCTTGCTGATG
1 CAAAATGCCCCAACATTTACTGATACAAACGTTCAAAATGCATTCAAAATTATTTCTTACTGATA
*
18482545 CGAACTTT
66 CGAACCTT
* * *
18482553 TAAAATGCCCCAACATTTACTGATACGAATGTTCAAAATGCATTCAAAATTATTTCTTACTGATA
1 CAAAATGCCCCAACATTTACTGATACAAACGTTCAAAATGCATTCAAAATTATTTCTTACTGATA
*
18482618 TGAACCTT
66 CGAACCTT
18482626 CAAAATGCCCCAACATTT
1 CAAAATGCCCCAACATTT
18482644 TTCATACTGA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 81 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (73 bp):
CAAAATGCCCCAACATTTACTGATACAAACGTTCAAAATGCATTCAAAATTATTTCTTACTGATA
CGAACCTT
Found at i:18482666 original size:38 final size:39
Alignment explanation
Indices: 18482601--18482708 Score: 128
Period size: 38 Copynumber: 2.8 Consensus size: 39
18482591 TGCATTCAAA
* *
18482601 ATTATTTCTTACTGATATGAACCTTCAAAATGCCCCAAC
1 ATTATTTCATACTGATATGAACCTTCAAAATACCCCAAC
* * * *
18482640 ATT-TTTCATACTGATGTGAGCTTTCAAAATATCCCAAC
1 ATTATTTCATACTGATATGAACCTTCAAAATACCCCAAC
* * *
18482678 ATTATTTCTTGCTAATATGAACCTTCAAAAT
1 ATTATTTCATACTGATATGAACCTTCAAAAT
18482709 GTCTCAACAT
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
38 32 0.57
39 24 0.43
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.37
Consensus pattern (39 bp):
ATTATTTCATACTGATATGAACCTTCAAAATACCCCAAC
Found at i:18482717 original size:39 final size:39
Alignment explanation
Indices: 18482601--18482719 Score: 150
Period size: 39 Copynumber: 3.1 Consensus size: 39
18482591 TGCATTCAAA
*
18482601 ATTATTTCTTACTGATATGAACCTTCAAAATGCCCCAAC
1 ATTATTTCTTACTGATATGAACCTTCAAAATGTCCCAAC
* * * * *
18482640 ATT-TTTCATACTGATGTGAGCTTTCAAAATATCCCAAC
1 ATTATTTCTTACTGATATGAACCTTCAAAATGTCCCAAC
* * *
18482678 ATTATTTCTTGCTAATATGAACCTTCAAAATGTCTCAAC
1 ATTATTTCTTACTGATATGAACCTTCAAAATGTCCCAAC
18482717 ATT
1 ATT
18482720 CCAAGTTATA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
38 32 0.49
39 33 0.51
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (39 bp):
ATTATTTCTTACTGATATGAACCTTCAAAATGTCCCAAC
Found at i:18489170 original size:16 final size:15
Alignment explanation
Indices: 18489149--18489178 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
18489139 AACCAATAAT
18489149 AATATTAAAAATTAAA
1 AATATT-AAAATTAAA
18489165 AATATTAAAATTAA
1 AATATTAAAATTAA
18489179 GGGATTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATATTAAAATTAAA
Found at i:18494797 original size:2 final size:2
Alignment explanation
Indices: 18494792--18494818 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18494782 TATACTTTTG
18494792 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
18494819 CTTACACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18496446 original size:18 final size:19
Alignment explanation
Indices: 18496417--18496455 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
18496407 TTGAAATTAC
18496417 TCCCCGTTACTATAATACA
1 TCCCCGTTACTATAATACA
18496436 TCCCC-TTACTATAATACA
1 TCCCCGTTACTATAATACA
18496454 TC
1 TC
18496456 TTCTCCCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.31, C:0.33, G:0.03, T:0.33
Consensus pattern (19 bp):
TCCCCGTTACTATAATACA
Found at i:18498389 original size:22 final size:23
Alignment explanation
Indices: 18498293--18498403 Score: 170
Period size: 23 Copynumber: 4.8 Consensus size: 23
18498283 TCAATTCCCT
*
18498293 AAAGGAGGGAATCGGTTCTCATTC
1 AAAGG-GGGAATCGGTTCCCATTC
18498317 AAAGGGGGAATCGGTTCCCATTC
1 AAAGGGGGAATCGGTTCCCATTC
18498340 AAAGGGGGAATCGGTTCCCATTC
1 AAAGGGGGAATCGGTTCCCATTC
*
18498363 AAAGGGGGAATCGGTTCCCCTTC
1 AAAGGGGGAATCGGTTCCCATTC
* *
18498386 -AAGGGGGTATCGATTCCC
1 AAAGGGGGAATCGGTTCCC
18498404 TCAGCACTAA
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
22 16 0.19
23 62 0.75
24 5 0.06
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (23 bp):
AAAGGGGGAATCGGTTCCCATTC
Found at i:18503817 original size:22 final size:21
Alignment explanation
Indices: 18503779--18503833 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
18503769 AACCATTCAA
*
18503779 GGGGGAATCGTTACCCCCTTG
1 GGGGGAATCGGTACCCCCTTG
18503800 GGGGGAATCGGTACCCCCTTG
1 GGGGGAATCGGTACCCCCTTG
18503821 GTGGGGAATCGGT
1 G-GGGGAATCGGT
18503834 TCCCTTTGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 21 0.66
22 11 0.34
ACGTcount: A:0.15, C:0.24, G:0.40, T:0.22
Consensus pattern (21 bp):
GGGGGAATCGGTACCCCCTTG
Found at i:18508936 original size:31 final size:32
Alignment explanation
Indices: 18508878--18508953 Score: 111
Period size: 31 Copynumber: 2.4 Consensus size: 32
18508868 TGGAGCCCAA
*
18508878 GAGCCTACCCAAGAAAGTTACTCGGGGCCACAG
1 GAGCCTACCCAAGAAAGATACTCGGGGCCAC-G
*
18508911 G-GCCTACCCAAGAAAGAT-CTCGGGGCCTCG
1 GAGCCTACCCAAGAAAGATACTCGGGGCCACG
18508941 GAGCCTACCCAAG
1 GAGCCTACCCAAG
18508954 GGTCACCTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 2 0.05
31 21 0.52
32 16 0.40
33 1 0.03
ACGTcount: A:0.28, C:0.33, G:0.28, T:0.12
Consensus pattern (32 bp):
GAGCCTACCCAAGAAAGATACTCGGGGCCACG
Found at i:18514971 original size:163 final size:163
Alignment explanation
Indices: 18514689--18515208 Score: 635
Period size: 163 Copynumber: 3.1 Consensus size: 163
18514679 CCGATTTTAT
* *
18514689 TATGACAAAACCGGTAAAGTGCTACCAGATATGTTGAAAGTATCGATTCCATTGAAATAAGTATC
1 TATGACAAAACCGGTAAAGCGCTACCAGATATATTGAAAGTATCGATTCCATTGAAATAAGTATC
* * * *
18514754 GACACTTCTGGAATTTAAAAGAGAAGCAGTAATAGCGTCTAAAAAGTATCGATAATTTATAAAAA
66 GACACTTTTGGAATTTAAAAGAAAAGCAGTAATAGCGCCTATAAAGTATCGATAATTTATAAAAA
*
18514819 TATATCGATCCATAACAATATAACAGGTAAAAA
131 TGTATCGATCCATAACAATATAACAGGTAAAAA
*
18514852 TATGACAAAACCGGTAAAGCGCTACCGGATATATTGAAAGTATCGATTCCATTGAAATAAGTATC
1 TATGACAAAACCGGTAAAGCGCTACCAGATATATTGAAAGTATCGATTCCATTGAAATAAGTATC
* *
18514917 GACACTTTTGGAATTTAAAAGAAAAACAGTAATAGCGCCTATAAAGTGTCGATAATTTATAAAAA
66 GACACTTTTGGAATTTAAAAGAAAAGCAGTAATAGCGCCTATAAAGTATCGATAATTTATAAAAA
*
18514982 TGTATCGATCCATAACAATATAACATGTAAAAA
131 TGTATCGATCCATAACAATATAACAGGTAAAAA
* * ** * * * * *
18515015 TATGACAAAACCGGTTTTATTATGACAAAACTAGTAAAATGTTACTAGATATGTTGAAAGTATCA
1 TATGACAAAACCGG---TA--AAG-C---GCTA-CCAGAT-ATA-TTGA-AAG-T------ATCG
* *
18515080 ATTCCATTGAAATAAGTGTCGACACTTTTGGAATTTAAAAGAAAAGCAGTAATAGCCCCTATAAA
46 ATTCCATTGAAATAAGTATCGACACTTTTGGAATTTAAAAGAAAAGCAGTAATAGCGCCTATAAA
* * *
18515145 GTATCTATACTTTATAAAAATGTATCGATCCATAACAATATAATAGGTAAAAA
111 GTATCGATAATTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAA
18515198 TATGACAAAAC
1 TATGACAAAAC
18515209 AGGTCTCATT
Statistics
Matches: 308, Mismatches: 29, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
163 166 0.54
166 2 0.01
168 2 0.01
169 1 0.00
172 3 0.01
173 2 0.01
174 2 0.01
175 3 0.01
176 2 0.01
177 1 0.00
183 124 0.40
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (163 bp):
TATGACAAAACCGGTAAAGCGCTACCAGATATATTGAAAGTATCGATTCCATTGAAATAAGTATC
GACACTTTTGGAATTTAAAAGAAAAGCAGTAATAGCGCCTATAAAGTATCGATAATTTATAAAAA
TGTATCGATCCATAACAATATAACAGGTAAAAA
Found at i:18515251 original size:183 final size:183
Alignment explanation
Indices: 18514852--18515261 Score: 631
Period size: 183 Copynumber: 2.2 Consensus size: 183
18514842 CAGGTAAAAA
* * *
18514852 TATGACAAAACCGGTAAAGCGCTACCGGATATATTGAAAGTATCGATTCCATTGAAATAAGTATC
1 TATGACAAAACTGGTAAAGCGCTACCGGATATGTTGAAAGTATCAATTCCATTGAAATAAGTATC
* *
18514917 GACACTTTTGGAATTTAAAAGAAAAACAGTAATAGCGCCTATAAAGTGTCGATAATTTATAAAAA
66 GACACTTTTGGAATTTAAAAGAAAAACAGTAATAGCCCCTATAAAGTATCGATAATTTATAAAAA
* * * *
18514982 TGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTTTTAT
131 TGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAT
* ** * ** *
18515035 TATGACAAAACTAGTAAAATGTTACTAGATATGTTGAAAGTATCAATTCCATTGAAATAAGTGTC
1 TATGACAAAACTGGTAAAGCGCTACCGGATATGTTGAAAGTATCAATTCCATTGAAATAAGTATC
* * *
18515100 GACACTTTTGGAATTTAAAAGAAAAGCAGTAATAGCCCCTATAAAGTATCTATACTTTATAAAAA
66 GACACTTTTGGAATTTAAAAGAAAAACAGTAATAGCCCCTATAAAGTATCGATAATTTATAAAAA
*
18515165 TGTATCGATCCATAACAATATAATAGGTAAAAATATGACAAAACAGGTCTCAT
131 TGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAT
*
18515218 TATGACAAAACTGGTAAAGCGCTACCGGATATGTTGAATGTATC
1 TATGACAAAACTGGTAAAGCGCTACCGGATATGTTGAAAGTATC
18515262 GATACTTTAA
Statistics
Matches: 200, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
183 200 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (183 bp):
TATGACAAAACTGGTAAAGCGCTACCGGATATGTTGAAAGTATCAATTCCATTGAAATAAGTATC
GACACTTTTGGAATTTAAAAGAAAAACAGTAATAGCCCCTATAAAGTATCGATAATTTATAAAAA
TGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAT
Found at i:18519120 original size:200 final size:199
Alignment explanation
Indices: 18518573--18519501 Score: 1350
Period size: 200 Copynumber: 4.6 Consensus size: 199
18518563 TAATATATCG
*
18518573 GTTTTATGACAGAATAGGTCAACATAATGTATC-AGTACTTTTTACATTTGTGTCGATACTTTTG
1 GTTTTATGACAGAATAGGTCAACATAATGTATCGA-TACTTTTTAAATTTGTGTCGATACTTTTG
* * * *
18518637 GTCCAGAATGAATGCCTAATGAGGTGCACACATAAAGTGTCGATACATTTATTAAAAGTATCGAT
65 GTCCAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACATTTATTATAAGTATCGAT
* * *
18518702 CCCAAAAACATCGAAACTGATAATTGTAAAGTCATAGGTAAATTTACAATGTAACCGATAAAAAT
130 CCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGTAACCGATAAAAAT
18518767 ATACAT
195 ATA-AT
* * *
18518773 GTTTTATGACAAAATAGGTCAACATAATGTAAT-GATACTTTTTACATTTTGTGTCGATATTTTT
1 GTTTTATGACAGAATAGGTCAACATAATGT-ATCGATACTTTTTA-AATTTGTGTCGATACTTTT
* * * *
18518837 TGTCCAGAATAAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACATTTATTGTAAGTATCAA
64 GGTCCAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACATTTATTATAAGTATCGA
*
18518902 TCCCAAAAACATCGAAACCGATCATTATAAAGTAATAGGTAAATTTACAATGTAACCGATAAAAA
129 TCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGTAACCGATAAAAA
*
18518967 TATATT
194 TATAAT
*
18518973 GGTTTTATGACAGAATAGTTCAACATAATGTATCGATACTTTTTAAATTTGTGTCGATACTTTTG
1 -GTTTTATGACAGAATAGGTCAACATAATGTATCGATACTTTTTAAATTTGTGTCGATACTTTTG
* * * *
18519038 GTCCATAATTG-ATGCCCAACGAGGT-CTATGTATAAAGTGTCGATACATTTATTGTAAGTATCG
65 GTCCAGAA-TGAATGCCCAACGAGGTGC-ACGCATAAAGTGTCGATACATTTATTATAAGTATCG
* * *
18519101 ATCCCAAAAACATCGAAACCGATAATTATAAATTAATAGGTAAATTTACAATGTAACTG-GAAAA
128 ATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGTAACCGATAAAA
*
18519165 ATATACT
193 ATATAAT
* * *
18519172 ATTTTCATGACAGAATAAGTCAACATAATGTATCGATACTTTTTACATTTGTGTCGATACTTTTG
1 GTTTT-ATGACAGAATAGGTCAACATAATGTATCGATACTTTTTAAATTTGTGTCGATACTTTTG
* *
18519237 GTCCAGAATGAATGCCTAACGAGGTGCACGCATAAAGTGTCGATACATTTATTAAAAGTATCGAT
65 GTCCAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACATTTATTATAAGTATCGAT
* * *
18519302 CCCAAAAATATCAAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGTAACCGGTAAAAAT
130 CCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGTAACCGATAAAAAT
18519367 ATACAT
195 ATA-AT
* * * *
18519373 GTTTTATGACAAAATAGGTCAATATAATCTATCGATACTTTTTAAA-TTGATGTCGCTACTTTTG
1 GTTTTATGACAGAATAGGTCAACATAATGTATCGATACTTTTTAAATTTG-TGTCGATACTTTTG
* *
18519437 GTCCAGAATGAATGCCCAATGAGGTGCACGCATAAAGTATCGATACATTTATT-TCAAGTATCGA
65 GTCCAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACATTTATTAT-AAGTATCGA
18519501 T
129 T
18519502 ACATAATGAT
Statistics
Matches: 656, Mismatches: 59, Indels: 28
0.88 0.08 0.04
Matches are distributed among these distances:
198 6 0.01
199 177 0.27
200 287 0.44
201 186 0.28
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.33
Consensus pattern (199 bp):
GTTTTATGACAGAATAGGTCAACATAATGTATCGATACTTTTTAAATTTGTGTCGATACTTTTGG
TCCAGAATGAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACATTTATTATAAGTATCGATC
CCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGTAACCGATAAAAATA
TAAT
Found at i:18519408 original size:399 final size:400
Alignment explanation
Indices: 18518564--18519501 Score: 1392
Period size: 399 Copynumber: 2.3 Consensus size: 400
18518554 CATTCCATCT
*
18518564 AATAT-ATCGGTTTTATGACAGAATAGGTCAACATAATGTATC-AGTACTTTTTACATTTGTGTC
1 AATATAAT-GGTTTTATGACAGAATAGGTCAACATAATGTATCGA-TACTTTTTAAATTTGTGTC
* * *
18518627 GATACTTTTGGTCCAGAATGAATGCCTAATGAGGTGCACACATAAAGTGTCGATACATTTATTAA
64 GATACTTTTGGTCCAGAATGAATGCCCAATGAGGTGCACGCATAAAGTGTCGATACATTTATT-T
* * *
18518692 AAGTATCGATCCCAAAAACATCGAAACTGATAATTGTAAAGTCATAGGTAAATTTACAATGTAAC
128 AAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGTAAC
* * *
18518757 CGATAAAAATATACATGTTTTATGACAAAATAGGTCAACATAATGTAATGATACTTTTTACATTT
193 CGAGAAAAATATACATGTTTCATGACAAAATAAGTCAACATAATGTAATGATACTTTTTACATTT
* *
18518822 TGTGTCGATATTTTTTGTCCAGAATAAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACATT
258 TGTGTCGATACTTTTGGTCCAGAATAAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACATT
** * *
18518887 TATTGTAAGTATCAATCCCAAAAACATCGAAACCGATCATTATAAAGTAATAGGTAAATTTACAA
323 TATTAAAAGTATCAATCCCAAAAACATCAAAACCGATAATTATAAAGTAATAGGTAAATTTACAA
18518952 TGTAACCGATAAA
388 TGTAACCGATAAA
* *
18518965 AATATATTGGTTTTATGACAGAATAGTTCAACATAATGTATCGATACTTTTTAAATTTGTGTCGA
1 AATATAATGGTTTTATGACAGAATAGGTCAACATAATGTATCGATACTTTTTAAATTTGTGTCGA
* * * *
18519030 TACTTTTGGTCCATAATTG-ATGCCCAACGAGGT-CTATGTATAAAGTGTCGATACATTTATTGT
66 TACTTTTGGTCCAGAA-TGAATGCCCAATGAGGTGC-ACGCATAAAGTGTCGATACATTTATT-T
*
18519093 AAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAATTAATAGGTAAATTTACAATGTAAC
128 AAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGTAAC
* *
18519158 TG-GAAAAATATACTAT-TTTCATGACAGAATAAGTCAACATAATGT-ATCGATACTTTTTACA-
193 CGAGAAAAATATAC-ATGTTTCATGACAAAATAAGTCAACATAATGTAAT-GATACTTTTTACAT
* *
18519219 TTTGTGTCGATACTTTTGGTCCAGAATGAATGCCTAACGAGGTGCACGCATAAAGTGTCGATACA
256 TTTGTGTCGATACTTTTGGTCCAGAATAAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACA
* *
18519284 TTTATTAAAAGTATCGATCCCAAAAATATCAAAACCGATAATTATAAAGTAATAGGTAAATTTAC
321 TTTATTAAAAGTATCAATCCCAAAAACATCAAAACCGATAATTATAAAGTAATAGGTAAATTTAC
*
18519349 AATGTAACCGGTAAA
386 AATGTAACCGATAAA
* * *
18519364 AATATACAT-GTTTTATGACAAAATAGGTCAATATAATCTATCGATACTTTTTAAA-TTGATGTC
1 AATATA-ATGGTTTTATGACAGAATAGGTCAACATAATGTATCGATACTTTTTAAATTTG-TGTC
* *
18519427 GCTACTTTTGGTCCAGAATGAATGCCCAATGAGGTGCACGCATAAAGTATCGATACATTTATTTC
64 GATACTTTTGGTCCAGAATGAATGCCCAATGAGGTGCACGCATAAAGTGTCGATACATTTATTT-
18519492 AAGTATCGAT
128 AAGTATCGAT
18519502 ACATAATGAT
Statistics
Matches: 484, Mismatches: 42, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
398 6 0.01
399 250 0.52
400 52 0.11
401 172 0.36
402 4 0.01
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (400 bp):
AATATAATGGTTTTATGACAGAATAGGTCAACATAATGTATCGATACTTTTTAAATTTGTGTCGA
TACTTTTGGTCCAGAATGAATGCCCAATGAGGTGCACGCATAAAGTGTCGATACATTTATTTAAG
TATCGATCCCAAAAACATCGAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGTAACCGA
GAAAAATATACATGTTTCATGACAAAATAAGTCAACATAATGTAATGATACTTTTTACATTTTGT
GTCGATACTTTTGGTCCAGAATAAATGCCCAACGAGGTGCACGCATAAAGTGTCGATACATTTAT
TAAAAGTATCAATCCCAAAAACATCAAAACCGATAATTATAAAGTAATAGGTAAATTTACAATGT
AACCGATAAA
Found at i:18521104 original size:31 final size:31
Alignment explanation
Indices: 18521066--18521140 Score: 150
Period size: 31 Copynumber: 2.4 Consensus size: 31
18521056 CAATTTTTTT
18521066 TTCATGTTCGTTCGTTAAGGAATATAGCTTG
1 TTCATGTTCGTTCGTTAAGGAATATAGCTTG
18521097 TTCATGTTCGTTCGTTAAGGAATATAGCTTG
1 TTCATGTTCGTTCGTTAAGGAATATAGCTTG
18521128 TTCATGTTCGTTC
1 TTCATGTTCGTTC
18521141 ATTTAAATGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.20, C:0.15, G:0.21, T:0.44
Consensus pattern (31 bp):
TTCATGTTCGTTCGTTAAGGAATATAGCTTG
Found at i:18521206 original size:23 final size:23
Alignment explanation
Indices: 18521176--18521233 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
18521166 GAACACAAAC
*
18521176 AAACGAACATAATAAATGAACAT
1 AAACGAACACAATAAATGAACAT
*
18521199 AAACGAACACAATGAATGAACAT
1 AAACGAACACAATAAATGAACAT
*
18521222 AAATGAACACAA
1 AAACGAACACAA
18521234 ACACAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.60, C:0.16, G:0.10, T:0.14
Consensus pattern (23 bp):
AAACGAACACAATAAATGAACAT
Found at i:18522284 original size:2 final size:2
Alignment explanation
Indices: 18522279--18522305 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18522269 ACACACACAT
18522279 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
18522306 TCCATACTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18522771 original size:23 final size:23
Alignment explanation
Indices: 18522745--18522795 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
18522735 TAAGTAATTA
**
18522745 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
18522768 ACCTATTACGTTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
18522791 ACCTA
1 ACCTA
18522796 ATATGTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:18522803 original size:23 final size:23
Alignment explanation
Indices: 18522755--18522804 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
18522745 ACCTATTTTA
*
18522755 TTATATAAGCGCTACCTATTACG
1 TTATATAAGCGCTACCTAATACG
*
18522778 TTATATAAGCGCTACCTAATATG
1 TTATATAAGCGCTACCTAATACG
18522801 TTAT
1 TTAT
18522805 TGTGCTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (23 bp):
TTATATAAGCGCTACCTAATACG
Found at i:18522898 original size:158 final size:159
Alignment explanation
Indices: 18522610--18522979 Score: 643
Period size: 158 Copynumber: 2.3 Consensus size: 159
18522600 ATAATGCGTA
* * * **
18522610 ACCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGCTTGATAATGTTTCCAGTAATTAA
1 ACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTAACAGTAATTAA
18522675 CCGGTTATGTTATCCTTGGTAACATTTTAGGCGTTTACCTAATATGTTGTAATAACAAATTAAGT
66 CCGGTTATGTTATCCTTGGTAACATTTTAGGCGTTTACCTAATATGTTGTAATAACAAATTAAGT
18522740 AATTAACCTA-TTTTATTATATAAGCGCT
131 AATTAACCTATTTTTATTATATAAGCGCT
* **
18522768 ACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTAATAATATTAATGGTAATTAA
1 ACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTAACAGTAATTAA
*
18522833 CCGGTTATGTTATCCTTGGTAACGTTTTAGGCGTTTACCTAATATGTTGTAATAACAAATTAAGT
66 CCGGTTATGTTATCCTTGGTAACATTTTAGGCGTTTACCTAATATGTTGTAATAACAAATTAAGT
18522898 AATTAACCTATTTTTATTATATAAGCGCT
131 AATTAACCTATTTTTATTATATAAGCGCT
*
18522927 ACCTATTACGTTATATAAGTGCTACCTAATATGTTATTGTGCTTGATAATATT
1 ACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATT
18522980 TCCGGTTAAA
Statistics
Matches: 200, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
158 131 0.65
159 69 0.34
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (159 bp):
ACCTATTACGTTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTAACAGTAATTAA
CCGGTTATGTTATCCTTGGTAACATTTTAGGCGTTTACCTAATATGTTGTAATAACAAATTAAGT
AATTAACCTATTTTTATTATATAAGCGCT
Found at i:18522944 original size:23 final size:23
Alignment explanation
Indices: 18522914--18522963 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
18522904 CCTATTTTTA
*
18522914 TTATATAAGCGCTACCTATTACG
1 TTATATAAGCGCTACCTAATACG
* *
18522937 TTATATAAGTGCTACCTAATATG
1 TTATATAAGCGCTACCTAATACG
18522960 TTAT
1 TTAT
18522964 TGTGCTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (23 bp):
TTATATAAGCGCTACCTAATACG
Found at i:18523388 original size:20 final size:21
Alignment explanation
Indices: 18523363--18523455 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
18523353 TTTTCCTAAT
*
18523363 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
18523383 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
18523404 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
18523424 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
18523445 TCGCAATGCGA
1 TCGCAATGCGA
18523456 TAATACAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:18523408 original size:41 final size:41
Alignment explanation
Indices: 18523363--18523476 Score: 187
Period size: 41 Copynumber: 2.8 Consensus size: 41
18523353 TTTTCCTAAT
18523363 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
18523404 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
18523445 TCGCAATGCG-ATAA-TACAAAATCGCAACGCGA
1 TCGCAATGCGAATAAGT---AAATCGCAACGCGA
18523477 TACTGACTTT
Statistics
Matches: 70, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
39 1 0.01
40 4 0.06
41 51 0.73
42 14 0.20
ACGTcount: A:0.41, C:0.19, G:0.23, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:18524055 original size:19 final size:19
Alignment explanation
Indices: 18524017--18524083 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
18524007 TTCGAGAATG
18524017 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
18524037 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
18524056 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
18524075 AAAATCGCA
1 AAAATCGCA
18524084 TTGCGATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 30 0.73
20 11 0.27
ACGTcount: A:0.48, C:0.25, G:0.16, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:18524101 original size:19 final size:19
Alignment explanation
Indices: 18524079--18524209 Score: 164
Period size: 19 Copynumber: 7.1 Consensus size: 19
18524069 GAAACCAAAA
*
18524079 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
18524098 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
18524117 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
18524136 TCGCAGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
18524156 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
18524172 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
18524189 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
18524208 TC
1 TC
18524210 AACCAAAAGA
Statistics
Matches: 97, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
14 10 0.10
15 1 0.01
16 1 0.01
17 1 0.01
18 1 0.01
19 65 0.67
20 18 0.19
ACGTcount: A:0.12, C:0.21, G:0.22, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Done.