Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3931635
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 20
Found at i:1105 original size:17 final size:17
Alignment explanation
Indices: 1083--1118 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
1073 TATTAATTAT
1083 GATGCTTTAGTGTGATA
1 GATGCTTTAGTGTGATA
1100 GATGCTTTAGTGTGATA
1 GATGCTTTAGTGTGATA
1117 GA
1 GA
1119 GGCGTTAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.06, G:0.31, T:0.39
Consensus pattern (17 bp):
GATGCTTTAGTGTGATA
Found at i:1126 original size:17 final size:17
Alignment explanation
Indices: 1089--1126 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
1079 TTATGATGCT
* *
1089 TTAGTGTGATAGATGCT
1 TTAGTGTGATAGAGGCG
1106 TTAGTGTGATAGAGGCG
1 TTAGTGTGATAGAGGCG
1123 TTAG
1 TTAG
1127 GATTAAACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.34, T:0.37
Consensus pattern (17 bp):
TTAGTGTGATAGAGGCG
Found at i:2010 original size:23 final size:23
Alignment explanation
Indices: 1974--2030 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
1964 TGACGTGGCA
*
1974 TCCAGTCAGCACCTTCTAAAAGGT
1 TCCAGTCAGTACCTTCTAAAA-GT
1998 T-CAGTCAGTACCTTCTAAAAGT
1 TCCAGTCAGTACCTTCTAAAAGT
2020 TCCAGTCAGTA
1 TCCAGTCAGTA
2031 ATTTCGTGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
22 3 0.10
23 27 0.87
24 1 0.03
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (23 bp):
TCCAGTCAGTACCTTCTAAAAGT
Found at i:4318 original size:11 final size:11
Alignment explanation
Indices: 4302--4339 Score: 76
Period size: 11 Copynumber: 3.5 Consensus size: 11
4292 TAAAAGGTAG
4302 TCAATTTGGTT
1 TCAATTTGGTT
4313 TCAATTTGGTT
1 TCAATTTGGTT
4324 TCAATTTGGTT
1 TCAATTTGGTT
4335 TCAAT
1 TCAAT
4340 CAAGTCACTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53
Consensus pattern (11 bp):
TCAATTTGGTT
Found at i:7122 original size:3 final size:3
Alignment explanation
Indices: 7114--7166 Score: 81
Period size: 3 Copynumber: 18.0 Consensus size: 3
7104 TAAAATTATT
* *
7114 TAA TAA TAA TTA TAA TAA TAA TTA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7162 -AA TAA
1 TAA TAA
7167 ATGGGGGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7131 original size:12 final size:12
Alignment explanation
Indices: 7101--7159 Score: 84
Period size: 12 Copynumber: 4.8 Consensus size: 12
7091 GCCTGAAATG
7101 TAATAA-AATTA
1 TAATAATAATTA
7112 TTTAATAATAATTA
1 --TAATAATAATTA
7126 TAATAATAATTA
1 TAATAATAATTA
*
7138 TAATAATAATAA
1 TAATAATAATTA
7150 TAATAATAAT
1 TAATAATAAT
7160 AAAATAAATG
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
12 33 0.75
13 6 0.14
14 5 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAATAATAATTA
Found at i:7461 original size:40 final size:39
Alignment explanation
Indices: 7345--7825 Score: 476
Period size: 39 Copynumber: 12.6 Consensus size: 39
7335 AGGTTGAATA
* * * * *
7345 AGTTCTTCAGACTATGAACTTCTTCTTCCTCTTTAGATG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* *
7384 AGTTCTTCATACTATGAACTCCTTTTTCCTCTTCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * **
7423 AGTTCTTCAGATTATAAACTCTTTTTTTTTTCTTCAGACG
1 AGTTCTTCAGATTATGAACTC-CTTTTTCCTCTTCAGACG
*
7463 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAAACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
*
7502 AGTTCTTCAGATTATGAACTCCTTCTTCCTCTTC--A-G
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * * *
7538 A-TT-AT--GA--ACT---C-CTTTTTTTCTTTTCAGACG
1 AGTTCTTCAGATTA-TGAACTCCTTTTTCCTCTTCAGACG
* *
7568 AGTTCTTCAGAATATGAACTCCTTTTT-CT-ATCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * *
7605 AGTTCTTCAAATTATGAACTCCTTTTTTCTCTTCAGACA
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * *
7644 ATTTCTTCAGATTATGAACTCTTTTTTTCTCTTCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
* * *
7683 AGTTCTTCAAATTATGAAGT-CTTTTATCCTCTTCAAACG
1 AGTTCTTCAGATTATGAACTCCTTTT-TCCTCTTCAGACG
*
7722 AGTTCTTCAGGTTATGAACTCTCTTTTT--TCTTCAGACG
1 AGTTCTTCAGATTATGAACTC-CTTTTTCCTCTTCAGACG
* * *
7760 ATTTCTTCAGATTATGAACTCCTTTTTCTTATTCAGACG
1 AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
*
7799 AGTTATTATTCAGATTATGAACTCCTT
1 AG---TTCTTCAGATTATGAACTCCTT
7826 CTGGAAATGT
Statistics
Matches: 369, Mismatches: 48, Indels: 47
0.80 0.10 0.10
Matches are distributed among these distances:
27 10 0.03
28 1 0.00
29 1 0.00
30 3 0.01
31 3 0.01
32 3 0.01
34 3 0.01
35 3 0.01
36 3 0.01
37 39 0.11
38 37 0.10
39 201 0.54
40 36 0.10
41 5 0.01
42 21 0.06
ACGTcount: A:0.23, C:0.22, G:0.11, T:0.44
Consensus pattern (39 bp):
AGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACG
Found at i:7623 original size:77 final size:76
Alignment explanation
Indices: 7531--7822 Score: 347
Period size: 77 Copynumber: 3.8 Consensus size: 76
7521 TCCTTCTTCC
* * *
7531 TCTTCAGATTATGAACTCCTTTTTTTCTTTTCAGACGAGTTCTTCAGAATATGAACTC-CTTTTT
1 TCTTCAAATTATGAACTCC-TTTTTTCTCTTCAGACGAGTTCTTCAGATTATGAACTCTCTTTTT
7595 CTATCAGACGAGT
65 CT-TCAGACGAGT
* * *
7608 TCTTCAAATTATGAACTCCTTTTTTCTCTTCAGACAATTTCTTCAGATTATGAACTCTTTTTTTC
1 TCTTCAAATTATGAACTCCTTTTTTCTCTTCAGACGAGTTCTTCAGATTATGAACTC-TCTTTT-
7673 TCTTCAGACGAGT
64 TCTTCAGACGAGT
* * * *
7686 TCTTCAAATTATGAAGT-CTTTTATCCTCTTCAAACGAGTTCTTCAGGTTATGAACTCTCTTTTT
1 TCTTCAAATTATGAACTCCTTTT-TTCTCTTCAGACGAGTTCTTCAGATTATGAACTCTC-TTTT
*
7750 TCTTCAGACGATT
64 TCTTCAGACGAGT
* * *
7763 TCTTCAGATTATGAACTCC-TTTTTCTTATTCAGACGAGTTATTATTCAGATTATGAACTC
1 TCTTCAAATTATGAACTCCTTTTTTC-TCTTCAGACGAG---TTCTTCAGATTATGAACTC
7823 CTTCTGGAAA
Statistics
Matches: 184, Mismatches: 21, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
76 36 0.20
77 64 0.35
78 64 0.35
79 3 0.02
80 17 0.09
ACGTcount: A:0.24, C:0.21, G:0.11, T:0.44
Consensus pattern (76 bp):
TCTTCAAATTATGAACTCCTTTTTTCTCTTCAGACGAGTTCTTCAGATTATGAACTCTCTTTTTC
TTCAGACGAGT
Found at i:7627 original size:142 final size:144
Alignment explanation
Indices: 7387--7827 Score: 478
Period size: 142 Copynumber: 3.0 Consensus size: 144
7377 TTAGATGAGT
* * * *
7387 TCTTCATACTATGAACTCC-TTTTTCCTCTTCAGACGAGTTCTTCAGATTATAAACTCTTTTTTT
1 TCTTCAAATTATGAACTCCTTTTTTCCTCTTCAGACGAGTTCTTCAGATTATGAACTC---TCTT
*
7451 TTTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAAACGAGTTCTTCAGATTA
63 TTTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACGAGTTCTTCAGATTA
7516 TGAACTCCTTCTTC-C-
128 TGAACTCCTTCTTCACG
* * * *
7531 TCTTCAGATTATGAACTCCTTTTTTTCTTTTCAGACGAGTTCTTCAGAATATGAACTC-CTTTTT
1 TCTTCAAATTATGAACTCCTTTTTTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCTCTTTTT
* * * *
7595 CTATCAGACGAGTTCTTCAAATTATGAACTCCTTTTTTCTCTTCAGACAATTTCTTCAGATTATG
66 CT-TCAGACGAGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACGAGTTCTTCAGATTATG
*
7660 AACTCTTTTTTTCTCTTCAGACGAG
130 AACTC-----CT-TCTTC--AC--G
* * * *
7685 TTCTTCAAATTATGAAGT-CTTTTATCCTCTTCAAACGAGTTCTTCAGGTTATGAACTCTCTTTT
1 -TCTTCAAATTATGAACTCCTTTTTTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCTC-TTT
* * * *
7749 TTCTTCAGACGATTTCTTCAGATTATGAACTCCTTTTTCTTATTCAGACGAGTTATTATTCAGAT
64 TTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACGAG---TTCTTCAGAT
7814 TATGAACTCCTTCT
126 TATGAACTCCTTCT
7828 GGAAATGTTT
Statistics
Matches: 247, Mismatches: 30, Indels: 32
0.80 0.10 0.10
Matches are distributed among these distances:
141 7 0.03
142 62 0.25
144 17 0.07
145 34 0.14
147 1 0.00
148 5 0.02
151 1 0.00
152 3 0.01
153 1 0.00
154 34 0.14
155 57 0.23
156 7 0.03
158 18 0.07
ACGTcount: A:0.23, C:0.22, G:0.11, T:0.44
Consensus pattern (144 bp):
TCTTCAAATTATGAACTCCTTTTTTCCTCTTCAGACGAGTTCTTCAGATTATGAACTCTCTTTTT
CTTCAGACGAGTTCTTCAGATTATGAACTCCTTTTTCCTCTTCAGACGAGTTCTTCAGATTATGA
ACTCCTTCTTCACG
Found at i:7637 original size:103 final size:105
Alignment explanation
Indices: 7426--7742 Score: 349
Period size: 105 Copynumber: 2.9 Consensus size: 105
7416 TCAGACGAGT
* *
7426 TCTTCAGATTATAAACTCTTTTTTTTTTCTTCAGACGAGTTCTTCAGATTATGAACTCCTTTTTC
1 TCTTCAGATTATAAACTCTTTTTTTCTTCTTCAGACGAGTTCTTCAGAATATGAACTCCTTTTTC
* *
7491 CTCTTCAAACGAGTTCTTCAGATTATGAACTCCTTCTTCC
66 CTCATCAAACGAGTTCTTCAAATTATGAACTCCTTCTTCC
*
7531 TCTTCAGATTATGAACTCCTTTTTTTCTT-TTCAGACGAGTTCTTCAGAATATGAACTCCTTTTT
1 TCTTCAGATTATAAACT-CTTTTTTTCTTCTTCAGACGAGTTCTTCAGAATATGAACTCCTTTTT
*
7595 -CT-ATCAGACGAGTTCTTCAAATTATGAACTCCTTTTTTCTCTTCAGAC
65 CCTCATCAAACGAGTTCTTCAAATTATGAACTCC-----T-TCTTC---C
* *
7643 AATTTCTTCAGATTATGAACTCTTTTTTTC-TCTTCAGACGAGTTCTTCA-AATTATGAAGT-CT
1 ----TCTTCAGATTATAAACTCTTTTTTTCTTCTTCAGACGAGTTCTTCAGAA-TATGAACTCCT
* **
7705 TTTATCCTCTTCAAACGAGTTCTTCAGGTTATGAACTC
61 TTT-TCCTCATCAAACGAGTTCTTCAAATTATGAACTC
7743 TCTTTTTTCT
Statistics
Matches: 182, Mismatches: 11, Indels: 26
0.83 0.05 0.12
Matches are distributed among these distances:
103 27 0.15
104 2 0.01
105 50 0.27
106 10 0.05
108 1 0.01
109 5 0.03
112 1 0.01
114 8 0.04
115 34 0.19
116 19 0.10
117 25 0.14
ACGTcount: A:0.23, C:0.22, G:0.11, T:0.44
Consensus pattern (105 bp):
TCTTCAGATTATAAACTCTTTTTTTCTTCTTCAGACGAGTTCTTCAGAATATGAACTCCTTTTTC
CTCATCAAACGAGTTCTTCAAATTATGAACTCCTTCTTCC
Found at i:7662 original size:181 final size:183
Alignment explanation
Indices: 7348--7717 Score: 498
Period size: 181 Copynumber: 2.0 Consensus size: 183
7338 TTGAATAAGT
* * * *
7348 TCTTCAGACTATGAACTTCTTCTTCCTCTTTAGATGAGTTCTTCATACTATGAACTCCTTTTTCC
1 TCTTCAGACTATGAACTCCTTCTTCCTCTTTAGACGAGTTCTTCAGAATATGAACTCCTTTTTCC
* * * * *
7413 TCTTCAGACGAGTTCTTCAGATTATAAACTCTTTTTTTTTTCTTCAGACGAGTTCTTCAGATTAT
66 TCATCAGACGAGTTCTTCAAATTATAAACTCTCTTTTTTCTCTTCAGACAAGTTCTTCAGATTAT
*
7478 GAACTCCTTTTTCCTCTTCAAACGAGTTCTTCAGATTATGAACTCCTTCT-TCC
131 GAACTCCTTTTTCCTCTTCAAACGAGTTCTTCAAATTATGAACT-CTTCTATCC
* **
7531 TCTTCAGATTATGAACTCCTT-TTTTTCTTTTCAGACGAGTTCTTCAGAATATGAACTCCTTTTT
1 TCTTCAGACTATGAACTCCTTCTTCCTC-TTT-AGACGAGTTCTTCAGAATATGAACTCCTTTTT
* *
7595 -CT-ATCAGACGAGTTCTTCAAATTATGAACTC-CTTTTTTCTCTTCAGACAATTTCTTCAGATT
64 CCTCATCAGACGAGTTCTTCAAATTATAAACTCTCTTTTTTCTCTTCAGACAAGTTCTTCAGATT
* * * * *
7657 ATGAACTCTTTTTTTCTCTTCAGACGAGTTCTTCAAATTATGAAGTCTTTTATCC
129 ATGAACTCCTTTTTCCTCTTCAAACGAGTTCTTCAAATTATGAACTCTTCTATCC
7712 TCTTCA
1 TCTTCA
7718 AACGAGTTCT
Statistics
Matches: 164, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
180 4 0.02
181 77 0.47
182 30 0.18
183 24 0.15
184 29 0.18
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.44
Consensus pattern (183 bp):
TCTTCAGACTATGAACTCCTTCTTCCTCTTTAGACGAGTTCTTCAGAATATGAACTCCTTTTTCC
TCATCAGACGAGTTCTTCAAATTATAAACTCTCTTTTTTCTCTTCAGACAAGTTCTTCAGATTAT
GAACTCCTTTTTCCTCTTCAAACGAGTTCTTCAAATTATGAACTCTTCTATCC
Found at i:7670 original size:116 final size:117
Alignment explanation
Indices: 7531--7825 Score: 379
Period size: 116 Copynumber: 2.5 Consensus size: 117
7521 TCCTTCTTCC
7531 TCTTCAGATTATGAACTCCTTTTTTTCTTTTCAGACGAGTTCTTCAGAATATGAACTCCTTTT-T
1 TCTTCAGATTATGAACT-CTTTTTTTCTTTTCAGACGAGTTCTTCAGAATATGAACTCCTTTTAT
*
7595 -CT-ATCAGACGAGTTCTTCAAATTATGAACTC-CTTTTTTCTCTTCAGACAATT
65 CCTCATCAAACGAGTTCTTCAAATTATGAACTCTC-TTTTT-TCTTCAGACAATT
* *
7647 TCTTCAGATTATGAACTCTTTTTTTCTCTTCAGACGAGTTCTTCA-AATTATGAAGT-CTTTTAT
1 TCTTCAGATTATGAACTCTTTTTTTCTTTTCAGACGAGTTCTTCAGAA-TATGAACTCCTTTTAT
* ** *
7710 CCTCTTCAAACGAGTTCTTCAGGTTATGAACTCTCTTTTTTCTTCAGACGATT
65 CCTCATCAAACGAGTTCTTCAAATTATGAACTCTCTTTTTTCTTCAGACAATT
* * *
7763 TCTTCAGATTATGAACTC-CTTTTTCTTATTCAGACGAGTTATTATTCAGATTATGAACTCCTT
1 TCTTCAGATTATGAACTCTTTTTTTCTT-TTCAGACGAG---TTCTTCAGAATATGAACTCCTT
7826 CTGGAAATGT
Statistics
Matches: 156, Mismatches: 12, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
114 7 0.04
115 42 0.27
116 59 0.38
117 30 0.19
118 1 0.01
119 13 0.08
120 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.11, T:0.44
Consensus pattern (117 bp):
TCTTCAGATTATGAACTCTTTTTTTCTTTTCAGACGAGTTCTTCAGAATATGAACTCCTTTTATC
CTCATCAAACGAGTTCTTCAAATTATGAACTCTCTTTTTTCTTCAGACAATT
Found at i:7987 original size:45 final size:46
Alignment explanation
Indices: 7876--8223 Score: 429
Period size: 45 Copynumber: 7.7 Consensus size: 46
7866 TTGTTATTTC
* *
7876 AAAACATCCGGCACTGAAGGTCTTATGGATGACCCGAAGGCTTTTTG
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGC-TTTTG
* * * *
7923 AAAACATCATGTACTGTAGGTCTTAAAGATGACCCGAAGGCTTTT-
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTTG
* * *
7968 AAAACATTCTGCACTGTAGGTCTTATGGATGACCCGAAGG-TTTTG
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTTG
* *
8013 AAATCATCCTACACTGAAGGTCTTATAGATGACCCGAAGG-TTTTG
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTTG
* *
8058 AAAACATCCTGCACTGAAGGTCTTATGGATGACCTGAAGG-TTTTG
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTTG
* * *
8103 AAAACATCCTACACTGAAGGTCTTACATATGACCCGAAGGC-TTTG
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTTG
* * * * * *
8148 AAAACATCATGCACTGTAGATCTTACAGATGAACCAAAGGC-TTTG
1 AAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTTG
* *
8193 AAAACATCATGCACTGAAGGTCTTACAGATG
1 AAAACATCCTGCACTGAAGGTCTTATAGATG
8224 TGGGAAATAG
Statistics
Matches: 265, Mismatches: 34, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
44 4 0.02
45 222 0.84
46 4 0.02
47 35 0.13
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (46 bp):
AAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTTG
Found at i:8921 original size:24 final size:23
Alignment explanation
Indices: 8872--8942 Score: 96
Period size: 24 Copynumber: 3.2 Consensus size: 23
8862 AATAAAGTTT
8872 TCATCTTTGAAAA-G-AGAATCTA
1 TCATCTTTGAAAATGTAG-ATCTA
8894 TCATCTTTGAAGAATGTAGATCTA
1 TCATCTTTGAA-AATGTAGATCTA
8918 TCATCTTTGAAAATGT--ATCTA
1 TCATCTTTGAAAATGTAGATCTA
8939 TCAT
1 TCAT
8943 GTAGATGTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
21 9 0.20
22 11 0.24
23 7 0.15
24 17 0.37
25 2 0.04
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (23 bp):
TCATCTTTGAAAATGTAGATCTA
Found at i:9400 original size:54 final size:54
Alignment explanation
Indices: 9306--9471 Score: 278
Period size: 54 Copynumber: 3.1 Consensus size: 54
9296 ATAATCACTG
* *
9306 GTTCATAAAACATTTGACATCACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
1 GTTCATAAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
* * *
9360 GTTCGTAAAGCATTTGACAACACATTTATCCTTTCTTGTGGCTTCTGCCCAGAT
1 GTTCATAAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
*
9414 GTTCATAAAGCATTTGGCAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
1 GTTCATAAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
9468 GTTC
1 GTTC
9472 TCAATCATTG
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.36
Consensus pattern (54 bp):
GTTCATAAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
Found at i:10598 original size:42 final size:42
Alignment explanation
Indices: 10510--10607 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
10500 GCTGTGAGCC
* *
10510 TTCAAAATGTCCCACATAGACCATTTCTATCTAAAACGGGCC
1 TTCAAAATGTCCCACATAGACCATTTCTATCTAAAACAGGCA
* * * * **
10552 TTCAAAATGTCCCACATGGACCATTTCTGTTTGAATTAGGCA
1 TTCAAAATGTCCCACATAGACCATTTCTATCTAAAACAGGCA
*
10594 TTCAAAATGCCCCA
1 TTCAAAATGTCCCA
10608 ACATTCTAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.29
Consensus pattern (42 bp):
TTCAAAATGTCCCACATAGACCATTTCTATCTAAAACAGGCA
Found at i:12647 original size:72 final size:70
Alignment explanation
Indices: 12547--12685 Score: 197
Period size: 72 Copynumber: 2.0 Consensus size: 70
12537 TATAATATAT
*
12547 AACAGGCTAGCTGAATATTATCCATAAAGCCAGGACGATTAACCAATTGTTTTTTAGGGGGACAA
1 AACAGGCTAGCTGAATATTATCCATAAAGCCAGGACGATTAACCAATTG--CTTTAGGGGGACAA
12612 CTCATCA
64 CTCATCA
* * * * * *
12619 AACAGGTTAGCTGAATATTATCCATAAAGTCGGGGCTATTAACCAATTGCTTTAGGGGGATAACT
1 AACAGGCTAGCTGAATATTATCCATAAAGCCAGGACGATTAACCAATTGCTTTAGGGGGACAACT
12684 CA
66 CA
12686 AGCTTTATTG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 16 0.27
72 44 0.73
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (70 bp):
AACAGGCTAGCTGAATATTATCCATAAAGCCAGGACGATTAACCAATTGCTTTAGGGGGACAACT
CATCA
Found at i:14877 original size:41 final size:41
Alignment explanation
Indices: 14820--14901 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
14810 TTAGTTTTGT
* * * * *
14820 CATTTGCTCTTTTGAATCATCTTGGAATTTTTTTCTTGATC
1 CATTTGCTCATTTGAATCACCCTGGAACTTTTTACTTGATC
*
14861 CATTTGTTCATTTGAATCACCCTGGAACTTTTTACTTGATC
1 CATTTGCTCATTTGAATCACCCTGGAACTTTTTACTTGATC
14902 AATCATCTCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.49
Consensus pattern (41 bp):
CATTTGCTCATTTGAATCACCCTGGAACTTTTTACTTGATC
Found at i:15212 original size:21 final size:20
Alignment explanation
Indices: 15199--15248 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 20
15189 ATGTATAATG
15199 AAAATGCAAAGATGCAAAAT
1 AAAATGCAAAGATGCAAAAT
15219 ACAAATGCAAAGATGCAAAAT
1 A-AAATGCAAAGATGCAAAAT
15240 AAAAATGCA
1 -AAAATGCA
15249 TGTATGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.60, C:0.12, G:0.14, T:0.14
Consensus pattern (20 bp):
AAAATGCAAAGATGCAAAAT
Found at i:15215 original size:8 final size:7
Alignment explanation
Indices: 15195--15248 Score: 51
Period size: 6 Copynumber: 7.9 Consensus size: 7
15185 GTGGATGTAT
15195 AATG-AA
1 AATGCAA
15201 AATGCAA
1 AATGCAA
15208 AGATGCAA
1 A-ATGCAA
*
15216 AATAC-A
1 AATGCAA
15222 AATGCAA
1 AATGCAA
15229 AGATGCAA
1 A-ATGCAA
*
15237 AAT-AAA
1 AATGCAA
15243 AATGCA
1 AATGCA
15249 TGTATGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
6 14 0.36
7 11 0.28
8 14 0.36
ACGTcount: A:0.59, C:0.11, G:0.15, T:0.15
Consensus pattern (7 bp):
AATGCAA
Found at i:15374 original size:42 final size:43
Alignment explanation
Indices: 15327--15408 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 43
15317 TACATCAAAT
*
15327 AAAACTTTACATATA-GGGATAGA-TTTCACTCCTAACTTCAAC
1 AAAACTTTACATATATGGGATA-ACCTTCACTCCTAACTTCAAC
15369 AAAACTTTACATATATGGGATAACCTTCACTCCTAACTTC
1 AAAACTTTACATATATGGGATAACCTTCACTCCTAACTTC
15409 TCTAAAGCCA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 16 0.43
43 21 0.57
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.32
Consensus pattern (43 bp):
AAAACTTTACATATATGGGATAACCTTCACTCCTAACTTCAAC
Found at i:24374 original size:16 final size:16
Alignment explanation
Indices: 24353--24396 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 16
24343 AAATTTATAT
24353 ATATTAATATATAAAA
1 ATATTAATATATAAAA
24369 ATATT-ATA-AT-AAA
1 ATATTAATATATAAAA
*
24382 ATAATAA-ATATAAAA
1 ATATTAATATATAAAA
24397 TCATTACCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 6 0.25
16 5 0.21
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATTAATATATAAAA
Found at i:26851 original size:15 final size:17
Alignment explanation
Indices: 26823--26869 Score: 57
Period size: 15 Copynumber: 3.0 Consensus size: 17
26813 AAATTTATAC
26823 ATATTAATATATAAAAT
1 ATATTAATATATAAAAT
26840 ATATT-ATA-ATAAAAT
1 ATATTAATATATAAAAT
*
26855 A-AATAA-ATATAAAAT
1 ATATTAATATATAAAAT
26870 CATTATTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 3 0.11
15 16 0.59
16 3 0.11
17 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATATTAATATATAAAAT
Found at i:29102 original size:15 final size:15
Alignment explanation
Indices: 29082--29131 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
29072 AATAATAAAA
29082 TAAAA-TAACAATAAT
1 TAAAAGTAA-AATAAT
* *
29097 TAAAATTAAAAAAAT
1 TAAAAGTAAAATAAT
29112 TAAAAGTAATAAT-AT
1 TAAAAGTAA-AATAAT
29127 TAAAA
1 TAAAA
29132 ACTAATGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 25 0.83
16 5 0.17
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (15 bp):
TAAAAGTAAAATAAT
Found at i:30087 original size:3 final size:3
Alignment explanation
Indices: 30056--30111 Score: 71
Period size: 3 Copynumber: 19.0 Consensus size: 3
30046 TTGGGTTTTG
* *
30056 TAA TAT TAA TAA -ATA TAA T-A TAT TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
30100 TAA TAA TAA TAA
1 TAA TAA TAA TAA
30112 ATTTAAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 3 0.07
3 42 0.91
4 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:30778 original size:113 final size:113
Alignment explanation
Indices: 30576--32377 Score: 3412
Period size: 113 Copynumber: 16.0 Consensus size: 113
30566 GAATTATGTG
* ** * * *
30576 AAAGGTTGAATAAGCTCTTCTCATTGTGAACTTT-TTCTT-CTCCTTCAAATGAGTTCTTCTCAT
1 AAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
30639 TTTGAACTTTTTCTGGAAAAGTTGATCCATCAGATGATGGATTTGAGCA
65 TATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
30688 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
30753 ATGAACTTTTTCTGGAAAAGCTGATCCATAAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
30801 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
30866 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
30914 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
30979 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
*
31027 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
31092 ATAAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGAA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
31140 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
31205 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
31253 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
31318 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
31366 AAAGGTTGAACAAA-TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
31430 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
31478 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
31543 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
31591 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
31656 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
31704 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
31769 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
*
31817 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTATTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
31882 ATGAACTTTTTCTGGAAAAGTTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
* *
31930 AAAGTTTGAACAAATTCTTCTCATAATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
31995 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
32043 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
32108 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
32156 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
32221 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
*
32269 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATT
1 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
32334 ATGAAATTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTG
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTG
32378 TATCTTTGCT
Statistics
Matches: 1661, Mismatches: 26, Indels: 5
0.98 0.02 0.00
Matches are distributed among these distances:
111 3 0.00
112 143 0.09
113 1515 0.91
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (113 bp):
AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCA
Found at i:31128 original size:339 final size:339
Alignment explanation
Indices: 30330--32377 Score: 3427
Period size: 339 Copynumber: 6.0 Consensus size: 339
30320 TAGAGTCATT
* * *
30330 CAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTT-TTCTTTCC-CCTTCAGATGAGTTCTTCT
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTC-TTCCTTCTTCAGATGAGTTCTTCT
* * * *** * *
30393 CATTATGAACTTTCTCTGGAAAGGTTGATGCTAATCTATCTCTTTCTGTAATAGAATT-ATGCAA
64 CATTATGAACTTTTTCTGGAAA-----A-GCTGATCCA--TC-AGATG--ATGGATTTGA-GCAA
** *
30457 AAGGTTGAACAAGCTCTTCTCATTGTGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTCATTA
117 AAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* * * * *
30518 TGAACTTTCTCTGGAAAAGCTGATGCTAATCTATCTGCTTCTGTGATAGAATTATGTG--AAAGG
182 TGAACTTTTTCTGGAAAAGCTGAT-C----C-ATCAG-----ATGAT-GGATT-TGAGCAAAAGG
* ** * * * *
30581 TTGAATAAGCTCTTCTCATTGTGAACTTT-TTCTT-CTCCTTCAAATGAGTTCTTCTCATTTTGA
234 TTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
*
30644 ACTTTTTCTGGAAAAGTTGATCCATCAGATGATGGATTTGAG
298 ACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
30686 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
30751 TTATGAACTTTTTCTGGAAAAGCTGATCCATAAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
30816 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
131 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
30881 AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
196 AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
30946 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
261 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
31011 ATGATGGATTTGAG
326 ATGATGGATTTGAG
*
31025 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
31090 TTATAAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGAAAAAGGTTGAACAAAT
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
31155 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
131 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
31220 AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
196 AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
31285 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
261 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
31350 ATGATGGATTTGAG
326 ATGATGGATTTGAG
31364 CAAAAGGTTGAACAAA-TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
31428 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
31493 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
131 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
31558 AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
196 AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
31623 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
261 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
31688 ATGATGGATTTGAG
326 ATGATGGATTTGAG
31702 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
31767 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
*
31832 TCTTCTCATTATGAATTTCTTATTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
131 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
* * *
31897 AAAAGTTGATCCATCAGATGATGGATTTGAGCAAAAGTTTGAACAAATTCTTCTCATAATGAATT
196 AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
31962 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
261 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
32027 ATGATGGATTTGAG
326 ATGATGGATTTGAG
32041 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
32106 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
32171 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
131 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
32236 AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
196 AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
* *
32301 TCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAAATTTTTCTGGAAAAGCTGATCCATCAG
261 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
32366 ATGATGGATTTG
326 ATGATGGATTTG
32378 TATCTTTGCT
Statistics
Matches: 1635, Mismatches: 45, Indels: 41
0.95 0.03 0.02
Matches are distributed among these distances:
336 3 0.00
337 7 0.00
338 370 0.23
339 1067 0.65
343 4 0.00
344 1 0.00
345 36 0.02
346 1 0.00
347 2 0.00
348 8 0.00
349 49 0.03
350 7 0.00
351 1 0.00
355 7 0.00
356 72 0.04
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.39
Consensus pattern (339 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAAT
TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATT
TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG
ATGATGGATTTGAG
Found at i:32804 original size:22 final size:22
Alignment explanation
Indices: 32779--32833 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
32769 CATAAAGTTT
* * *
32779 TCATTTTTGAAAAGAGAATTTG
1 TCATCTTTGAAAAGAGAATCTA
*
32801 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
32823 TCATCTTTGAA
1 TCATCTTTGAA
32834 GAGTGTAGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:33326 original size:54 final size:53
Alignment explanation
Indices: 33205--33405 Score: 196
Period size: 54 Copynumber: 3.8 Consensus size: 53
33195 CACTAGTTCA
* * * *
33205 TAAAACATTTGACAATACATTCAT-TTTTTCCTGTGGTTTCTG-TC-GAGA--TG
1 TAAAACATTTGACAACACATTCATCCTTTT--TGTGGCTTCTGCTCAGACATTTG
* * **
33255 TAAAACACTTGACAACACATTCATCCTTTTATGCGGCTTCTGCTCAGATGTTTG
1 TAAAACATTTGACAACACATTCATCCTTTT-TGTGGCTTCTGCTCAGACATTTG
* * **
33309 TAAAACATTTGACAACACATTCATCCTTTCTTGTGGTTTTTGCTCAGACATTCA
1 TAAAACATTTGACAACACATTCATCCTTT-TTGTGGCTTCTGCTCAGACATTTG
* *
33363 TAAAGCGTTTGACAACACATTCATCCTTTTCTGTGGCTTCTGC
1 TAAAACATTTGACAACACATTCATCCTTTT-TGTGGCTTCTGC
33406 CAAGATTTCT
Statistics
Matches: 124, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
50 31 0.25
51 6 0.05
52 2 0.02
53 1 0.01
54 83 0.67
55 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (53 bp):
TAAAACATTTGACAACACATTCATCCTTTTTGTGGCTTCTGCTCAGACATTTG
Found at i:33405 original size:108 final size:104
Alignment explanation
Indices: 33205--33405 Score: 260
Period size: 104 Copynumber: 1.9 Consensus size: 104
33195 CACTAGTTCA
* ** *
33205 TAAAACATTTGACAATACATTCATTTTTTCCTGTGGTTTCTGTCGAGATGTAAAACACTTGACAA
1 TAAAACATTTGACAACACATTCATCCTTTCCTGTGGTTTCTGTCGACATGTAAAACACTTGACAA
33270 CACATTCATCCTTTTATGCGGCTTCTGCTCAGATGTTTG
66 CACATTCATCCTTTTATGCGGCTTCTGCTCAGATGTTTG
* * **
33309 TAAAACATTTGACAACACATTCATCCTTTCTTGTGGTTTTTGCTCAGACAT-TCATAAAGCGTTT
1 TAAAACATTTGACAACACATTCATCCTTTCCTGTGGTTTCTG-TC-GACATGT-A-AAA-CACTT
* *
33373 GACAACACATTCATCCTTTTCTGTGGCTTCTGC
61 GACAACACATTCATCCTTTTATGCGGCTTCTGC
33406 CAAGATTTCT
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
104 37 0.45
105 3 0.04
106 5 0.06
107 3 0.04
108 34 0.41
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (104 bp):
TAAAACATTTGACAACACATTCATCCTTTCCTGTGGTTTCTGTCGACATGTAAAACACTTGACAA
CACATTCATCCTTTTATGCGGCTTCTGCTCAGATGTTTG
Found at i:35839 original size:115 final size:114
Alignment explanation
Indices: 35525--35865 Score: 574
Period size: 114 Copynumber: 3.0 Consensus size: 114
35515 GATCATGCAG
* * * * * *
35525 TTCATCTTTCAATTCCAATGATCGGTTCTGGGGTTCCTACCGAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
* * *
35590 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGAAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
35639 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
35704 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTATACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
*
35753 TTCATCTTTCAAATCCAATGATTAGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATT-GGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
35818 AACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCA
65 AACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCA
35866 CATGGCACTT
Statistics
Matches: 214, Mismatches: 12, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
114 127 0.59
115 87 0.41
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
Found at i:41469 original size:13 final size:14
Alignment explanation
Indices: 41421--41473 Score: 63
Period size: 13 Copynumber: 3.8 Consensus size: 14
41411 TTGTGCAATA
* *
41421 CAAATGCAAAGATG
1 CAAATGTAAATATG
41435 CCAAATGTAAATATG
1 -CAAATGTAAATATG
41450 CAAATGTAAA-ATG
1 CAAATGTAAATATG
*
41463 TAAATGTAAAT
1 CAAATGTAAAT
41474 TATTTAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.35
14 10 0.29
15 12 0.35
ACGTcount: A:0.51, C:0.09, G:0.15, T:0.25
Consensus pattern (14 bp):
CAAATGTAAATATG
Found at i:43098 original size:28 final size:28
Alignment explanation
Indices: 43067--43138 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
43057 AAAATGAAAC
* *
43067 ATATAAATATTATGAAAATAATAAGTAA
1 ATATAAATATTATGAAAAGAAGAAGTAA
* * *
43095 ATATAAAAATTTTGAAAAGAAGAATTAA
1 ATATAAATATTATGAAAAGAAGAAGTAA
*
43123 AAATTAAATA-TATGAA
1 ATA-TAAATATTATGAA
43139 CTTTTAATTT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
28 30 0.86
29 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (28 bp):
ATATAAATATTATGAAAAGAAGAAGTAA
Found at i:43893 original size:138 final size:135
Alignment explanation
Indices: 43591--43894 Score: 296
Period size: 134 Copynumber: 2.2 Consensus size: 135
43581 AAGTAAATTT
* * *
43591 ATTAATTTATATAAATAAGATATTTATTTATTTAGAAATATCAAAAAAGAGCTTCTAGGTGTTTT
1 ATTAAATT-TATAAATAGGATATTTATTTATTTAGAAATA-CAAAAAAGAGCTTCTAGGTATTTT
* *
43656 AAGACAGCTCCTTCCTTTGATATTAAAAAATAAATAAATATTAAAACATTTATCTAAAAAATAGA
64 AAGACAGCTCCTTCCTTAGATATTAAAAAATAAATAAATATCAAAACATTTATCTAAAAAATAGA
*
43721 TTAATAT
129 TTAATAA
* * *
43728 A-TACAATTTATAAAAGTAGGACATTTATTTATTTA-AGAATA-GAAAAGGA-CTTCTAGGTATT
1 ATTA-AATTTAT-AAA-TAGGATATTTATTTATTTAGA-AATACAAAAAAGAGCTTCTAGGTATT
* * * * *
43789 TTAAGACAGCT-CTTTCTTAGATATTAAATAATAAATACATATCAAAATATGTTTATTTTTCTTA
62 TTAAGACAGCTCCTTCCTTAGATATTAAAAAATAAATAAATATCAAAACA--TTTA----TCTAA
* *
43853 AAAGTA-ATTTATAAA
121 AAAATAGATTAAT-AA
*
43868 ATTAAATTTATAAATAGGATTTTTATT
1 ATTAAATTTATAAATAGGATATTTATT
43895 GAATAAACAA
Statistics
Matches: 137, Mismatches: 18, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
134 32 0.23
135 22 0.16
136 15 0.11
137 8 0.06
138 32 0.23
139 8 0.06
140 18 0.13
141 2 0.01
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (135 bp):
ATTAAATTTATAAATAGGATATTTATTTATTTAGAAATACAAAAAAGAGCTTCTAGGTATTTTAA
GACAGCTCCTTCCTTAGATATTAAAAAATAAATAAATATCAAAACATTTATCTAAAAAATAGATT
AATAA
Found at i:43944 original size:14 final size:15
Alignment explanation
Indices: 43914--43946 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
43904 AATAGAATAA
43914 ATAAATAAATATTAT
1 ATAAATAAATATTAT
*
43929 ATAAATATAT-TTAT
1 ATAAATAAATATTAT
43943 ATAA
1 ATAA
43947 CTTAATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAAATAAATATTAT
Found at i:44037 original size:15 final size:16
Alignment explanation
Indices: 44017--44067 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
44007 AATAATAAAA
*
44017 TAAAA-TAACAATAAT
1 TAAAAGTAAAAATAAT
* *
44032 TAAAATTAAAAAAAAT
1 TAAAAGTAAAAATAAT
*
44048 TAAAAGTAATAAT-AT
1 TAAAAGTAAAAATAAT
44063 TAAAA
1 TAAAA
44068 ACTAATGGAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 12 0.40
16 18 0.60
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (16 bp):
TAAAAGTAAAAATAAT
Found at i:44064 original size:25 final size:25
Alignment explanation
Indices: 44006--44068 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
43996 ATATCAAATG
*
44006 TAATAATAAAATAAAATAACAATAAT
1 TAATATTAAAA-AAAATAACAATAAT
*
44032 TAAAATTAAAAAAAATTAA-AAGTAA-
1 TAATATTAAAAAAAA-TAACAA-TAAT
44057 TAATATTAAAAA
1 TAATATTAAAAA
44069 CTAATGGATC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
25 17 0.53
26 15 0.47
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (25 bp):
TAATATTAAAAAAAATAACAATAAT
Found at i:45310 original size:3 final size:3
Alignment explanation
Indices: 45281--45333 Score: 70
Period size: 3 Copynumber: 17.0 Consensus size: 3
45271 TTGGGTTTTT
* *
45281 TAA TAT TAA TAAA TAA TATA TAT TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
45328 TAA TAA
1 TAA TAA
45334 ATTTTAAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:47510 original size:21 final size:21
Alignment explanation
Indices: 47484--47528 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
47474 CTTTCTATAC
47484 CATCTCTAATCACATTTAACT
1 CATCTCTAATCACATTTAACT
47505 CATCTCTAATCACATTTAACT
1 CATCTCTAATCACATTTAACT
47526 CAT
1 CAT
47529 TTTTCACAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (21 bp):
CATCTCTAATCACATTTAACT
Found at i:53370 original size:67 final size:67
Alignment explanation
Indices: 53257--53393 Score: 229
Period size: 67 Copynumber: 2.0 Consensus size: 67
53247 ATCCTTCAGC
* * * *
53257 TATGCCAAATAAATGCAAACAAATTTAAAGTTGTTAAATTTCAAGGCATAAAGGCGATATTGCCT
1 TATGACAAATAAATGCAAACAAATTTAAAGTTGTTAAATTTCAAGGCATAAAGGCAATAATGCAT
53322 AT
66 AT
*
53324 TATGACAAATAAATGCAAATAAATTTAAAGTTGTTAAATTTCAAGGCATAAAGGCAATAATGCAT
1 TATGACAAATAAATGCAAACAAATTTAAAGTTGTTAAATTTCAAGGCATAAAGGCAATAATGCAT
53389 AT
66 AT
53391 TAT
1 TAT
53394 TTGAGTCAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.31
Consensus pattern (67 bp):
TATGACAAATAAATGCAAACAAATTTAAAGTTGTTAAATTTCAAGGCATAAAGGCAATAATGCAT
AT
Found at i:54441 original size:42 final size:42
Alignment explanation
Indices: 54394--54473 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
54384 AGCGAATAAG
* *
54394 TCCTTCGGGCCATCAATAAGTCTTTCAAGCATGATGATTAAA
1 TCCTTCAGGCCATCAATAAGTCTTTCAAGCAAGATGATTAAA
* * *
54436 TCCTTCAGGTCATCTATAAGTTTTTCAAGCAAGATGAT
1 TCCTTCAGGCCATCAATAAGTCTTTCAAGCAAGATGAT
54474 ATGCCCTACA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (42 bp):
TCCTTCAGGCCATCAATAAGTCTTTCAAGCAAGATGATTAAA
Found at i:54730 original size:38 final size:38
Alignment explanation
Indices: 54632--54806 Score: 187
Period size: 38 Copynumber: 4.6 Consensus size: 38
54622 ATTTTATCTT
* * * *
54632 ACTTGAGATTATTTTTATAAAAAACAACAAATT-TTATCTC
1 ACTTGAGATTGTTTTTCT-TAAAAC-A-AAATTCTTATTTC
* *
54672 ACATGAGATTGTTTTTCTTAAAACAAAATTCTTATTTT
1 ACTTGAGATTGTTTTTCTTAAAACAAAATTCTTATTTC
54710 ACTTGAGATT-TTTTTCCTTAAAACAAAATTCTTATTTC
1 ACTTGAGATTGTTTTT-CTTAAAACAAAATTCTTATTTC
* * *
54748 ACTTGAGATTGTTTTTCTGAAAAC--AATTTTTATCTC
1 ACTTGAGATTGTTTTTCTTAAAACAAAATTCTTATTTC
**
54784 ACTTGATTTTGTTTTTCTTAAAA
1 ACTTGAGATTGTTTTTCTTAAAA
54807 TAGATTTAAT
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
36 30 0.25
37 10 0.08
38 53 0.45
39 10 0.08
40 15 0.13
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (38 bp):
ACTTGAGATTGTTTTTCTTAAAACAAAATTCTTATTTC
Found at i:54796 original size:36 final size:37
Alignment explanation
Indices: 54657--54869 Score: 206
Period size: 36 Copynumber: 5.8 Consensus size: 37
54647 TATAAAAAAC
*
54657 AACAAATT-TTATCTCACATGAGATTGTTTTTCTTAA
1 AACAAATTCTTATCTCACTTGAGATTGTTTTTCTTAA
* *
54693 AACAAAATTCTTATTTTACTTGAGATT-TTTTTCCTTAA
1 AAC-AAATTCTTATCTCACTTGAGATTGTTTTT-CTTAA
* *
54731 AACAAAATTCTTATTTCACTTGAGATTGTTTTTCTGAA
1 AAC-AAATTCTTATCTCACTTGAGATTGTTTTTCTTAA
* **
54769 AAC-AATTTTTATCTCACTTGATTTTGTTTTTCTTAA
1 AACAAATTCTTATCTCACTTGAGATTGTTTTTCTTAA
* * * *
54805 AATAGATT-TAATCTCTCTTGAGAATAT-TTTTTCTTAA
1 AACAAATTCTTATCTCACTTGAG-AT-TGTTTTTCTTAA
* *
54842 AACATATT-TT-TCTCACTCGAGATTGTTT
1 AACAAATTCTTATCTCACTTGAGATTGTTT
54870 CTTGAAAATA
Statistics
Matches: 148, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
34 1 0.01
35 5 0.03
36 53 0.36
37 31 0.21
38 53 0.36
39 5 0.03
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.48
Consensus pattern (37 bp):
AACAAATTCTTATCTCACTTGAGATTGTTTTTCTTAA
Found at i:54799 original size:76 final size:72
Alignment explanation
Indices: 54625--54877 Score: 167
Period size: 76 Copynumber: 3.4 Consensus size: 72
54615 ACTCAAGATT
*
54625 TTATCTTACTTGAGATTATTTT-TATAAAAAACAACAAATTTTATCTCACATGAGATTGTTTTTC
1 TTATCTCACTTGAGATT-TTTTCT-T--AAAAC-A-AAATTTTATCTCACATGAGATTGTTTTTC
*
54689 TTAAAACAAAATTC
60 TGAAAAC-AAATTC
* * * *
54703 TTATTTTACTTGAGATTTTTTTCCTTAAAACAAAATTCTTATTTCACTTGAGATTGTTTTTCTGA
1 TTATCTCACTTGAGA-TTTTTT-CTTAAAACAAAATT-TTATCTCACATGAGATTGTTTTTCTGA
*
54768 AAAC-AATTT
63 AAACAAATTC
** * * * * * *
54777 TTATCTCACTTGATTTTGTTTTTCTTAAAA-TAGATTTAATCTCTCTTGAGAATAT-TTTTTCTT
1 TTATCTCACTTGA-GAT-TTTTTCTTAAAACAAAATTTTATCTCACATGAG-AT-TGTTTTTCTG
*
54840 AAAACATATT-
62 AAAACAAATTC
* *
54850 TT-TCTCACTCGAGATTGTTTCTTGAAAA
1 TTATCTCACTTGAGATTTTTTCTT-AAAA
54878 TATCTCTCTT
Statistics
Matches: 145, Mismatches: 20, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
70 7 0.05
71 5 0.03
72 20 0.14
73 20 0.14
74 27 0.19
75 10 0.07
76 29 0.20
77 5 0.03
78 18 0.12
79 3 0.02
80 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (72 bp):
TTATCTCACTTGAGATTTTTTCTTAAAACAAAATTTTATCTCACATGAGATTGTTTTTCTGAAAA
CAAATTC
Found at i:58662 original size:24 final size:26
Alignment explanation
Indices: 58617--58671 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 26
58607 TTATCATAGC
*
58617 TATTATTGTTTCTAACTATTATGAGTT
1 TATTATTGTTTCTAAC-ATTATAAGTT
* *
58644 TATTATT-TTTCTCAC-TTATAATTT
1 TATTATTGTTTCTAACATTATAAGTT
58668 TATT
1 TATT
58672 TCATAGCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 11 0.44
26 7 0.28
27 7 0.28
ACGTcount: A:0.25, C:0.09, G:0.05, T:0.60
Consensus pattern (26 bp):
TATTATTGTTTCTAACATTATAAGTT
Found at i:58813 original size:20 final size:20
Alignment explanation
Indices: 58771--58815 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
58761 AAGCTCCTCA
* ** *
58771 GTATCGATATTGACCTTTGG
1 GTATCGATAATGACCCCTAG
58791 GTATCGATAATGACCCCTAG
1 GTATCGATAATGACCCCTAG
58811 GTATC
1 GTATC
58816 AATACTACTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (20 bp):
GTATCGATAATGACCCCTAG
Found at i:60695 original size:31 final size:29
Alignment explanation
Indices: 60660--60724 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
60650 TTAATTTAGT
60660 TTAATAAATTCATTTT-GTAATTTTTGAATTA
1 TTAATAAATT-ATTTTAGTAA--TTTGAATTA
* *
60691 TTAATTAATTTTTTTAGTAATTTGAATTA
1 TTAATAAATTATTTTAGTAATTTGAATTA
60720 TTAAT
1 TTAAT
60725 TTTGCTACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 14 0.45
30 4 0.13
31 13 0.42
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (29 bp):
TTAATAAATTATTTTAGTAATTTGAATTA
Found at i:60797 original size:16 final size:16
Alignment explanation
Indices: 60756--60787 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
60746 TACATGTTTG
60756 TTAATT-CTTTTAATT
1 TTAATTGCTTTTAATT
60771 TTAATTGCTTTTAATT
1 TTAATTGCTTTTAATT
60787 T
1 T
60788 ACTTTGCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (16 bp):
TTAATTGCTTTTAATT
Found at i:65080 original size:24 final size:24
Alignment explanation
Indices: 65053--65138 Score: 59
Period size: 27 Copynumber: 3.3 Consensus size: 24
65043 ATCAAATGAG
*
65053 AAAAAAAGTAATAAAATAAAATAAA
1 AAAAAAAGAAATAAAATAAAAT-AA
65078 AAATAAATAGAAATAAAAGTAAAA-AA
1 AAA-AAA-AGAAATAAAA-TAAAATAA
65104 ATAAATCAAAGGGAAA-AAAATAAAATAA
1 A-AAA--AAA--GAAATAAAATAAAATAA
*
65132 ATAAAAA
1 AAAAAAA
65139 TAAAACAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 18
0.71 0.03 0.26
Matches are distributed among these distances:
25 6 0.12
26 7 0.14
27 19 0.38
28 14 0.28
29 4 0.08
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (24 bp):
AAAAAAAGAAATAAAATAAAATAA
Found at i:65109 original size:28 final size:29
Alignment explanation
Indices: 65062--65136 Score: 95
Period size: 28 Copynumber: 2.7 Consensus size: 29
65052 GAAAAAAAGT
*
65062 AATAAAATAAAATAAA-AAAT-AAATAGA
1 AATAAAATAAAATAAATAAATCAAAGAGA
*
65089 AATAAAAGTAAAA-AAATAAATCAAAGGGA
1 AATAAAA-TAAAATAAATAAATCAAAGAGA
65118 AA-AAAATAAAATAAATAAA
1 AATAAAATAAAATAAATAAA
65137 AATAAAACAA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
27 15 0.36
28 20 0.48
29 7 0.17
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (29 bp):
AATAAAATAAAATAAATAAATCAAAGAGA
Found at i:65114 original size:18 final size:19
Alignment explanation
Indices: 65088--65132 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
65078 AAATAAATAG
*
65088 AAATAAAA-GTAAAAAAAT
1 AAATAAAAGGGAAAAAAAT
*
65106 AAATCAAAGGGAAAAAAAT
1 AAATAAAAGGGAAAAAAAT
65125 AAAATAAA
1 -AAATAAA
65133 TAAAAATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 9 0.41
20 6 0.27
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.13
Consensus pattern (19 bp):
AAATAAAAGGGAAAAAAAT
Found at i:66433 original size:22 final size:21
Alignment explanation
Indices: 66419--66459 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
66409 AAATTAAATG
66419 AATAAAAATAATAAATAATAAA
1 AATAAAAATAATAAAT-ATAAA
*
66441 AATAACAATAATAAA-ATAA
1 AATAAAAATAATAAATATAA
66460 TATTATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
22 14 0.78
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (21 bp):
AATAAAAATAATAAATATAAA
Found at i:66611 original size:34 final size:35
Alignment explanation
Indices: 66496--66721 Score: 169
Period size: 34 Copynumber: 6.3 Consensus size: 35
66486 TTATTTTCCC
* * * *
66496 AAAATATTTT-TAAAACCATATATTATATGTTTTC
1 AAAATATTTTCAAAAACTATATATAATATGTTTTT
* *
66530 AAAATGTTTTCAAAAACTATATATTATATATATTTTT
1 AAAATATTTTCAAAAACTATATA-TA-ATATGTTTTT
66567 CAAAATATTTTCAAAAACTATA-ATAATATGTTTTT
1 -AAAATATTTTCAAAAACTATATATAATATGTTTTT
* * **
66602 AAAATATTTTCAAAAACTATATATTATATATATTCA
1 AAAATATTTTCAAAAACTATATATAATATGT-TTTT
* **
66638 AAAATAATTTTC-AAAACCATA-ATATATAT-TTTCA
1 AAAAT-ATTTTCAAAAACTATATATA-ATATGTTTTT
*
66672 AAAATCATTTTC-AAAACCATATA-ATATATGTATTTT
1 AAAAT-ATTTTCAAAAACTATATATA-ATATGT-TTTT
66708 CAAAAATAATTTTC
1 --AAAAT-ATTTTC
66722 CAAACTGTAT
Statistics
Matches: 161, Mismatches: 18, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
34 60 0.37
35 31 0.19
36 24 0.15
37 15 0.09
38 31 0.19
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.43
Consensus pattern (35 bp):
AAAATATTTTCAAAAACTATATATAATATGTTTTT
Found at i:66612 original size:72 final size:72
Alignment explanation
Indices: 66474--66726 Score: 286
Period size: 72 Copynumber: 3.5 Consensus size: 72
66464 ATTCAATATA
* * * * * *
66474 TATATATTATATTTATTTTCCCAAAAT-ATTTTTAAAACCATATATTATATGTTTTCAAAATGTT
1 TATATATTATATATATTTT-CAAAAATAATTTTCAAAACCATA-ATAATATGTTTTAAAAATATT
66538 TTCAAAAAC
64 TTCAAAAAC
* *
66547 TATATATTATATATATTTTTC-AAAAT-ATTTTCAAAAACTATAATAATATGTTTTTAAAATATT
1 TATATATTATATATA-TTTTCAAAAATAATTTTC-AAAACCATAATAATATGTTTTAAAAATATT
66610 TTCAAAAAC
64 TTCAAAAAC
*
66619 TATATATTATATATA--TTCAAAAATAATTTTCAAAACCATAATATATAT-TTTCAAAAATCATT
1 TATATATTATATATATTTTCAAAAATAATTTTCAAAACCATAATA-ATATGTTTTAAAAAT-ATT
66681 TTC-AAAAC
64 TTCAAAAAC
* * * *
66689 CATATAATATATGTATTTTCAAAAATAATTTTCCAAAC
1 TATATATTATATATATTTTCAAAAATAATTTTCAAAAC
66727 TGTATAATAT
Statistics
Matches: 159, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
69 3 0.02
70 41 0.26
71 16 0.10
72 72 0.45
73 23 0.14
74 4 0.03
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (72 bp):
TATATATTATATATATTTTCAAAAATAATTTTCAAAACCATAATAATATGTTTTAAAAATATTTT
CAAAAAC
Found at i:67527 original size:15 final size:16
Alignment explanation
Indices: 67501--67534 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
67491 TTTAATGAGG
67501 AAAAATACAAAAAAAT
1 AAAAATACAAAAAAAT
*
67517 AAAAATA-AAAAAGAT
1 AAAAATACAAAAAAAT
67532 AAA
1 AAA
67535 TCTTGTTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAAATACAAAAAAAT
Found at i:71087 original size:17 final size:17
Alignment explanation
Indices: 71065--71098 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
71055 TAAAATAAAA
*
71065 TTTAGATCGATCACTGT
1 TTTAGATCCATCACTGT
71082 TTTAGATCCATCACTGT
1 TTTAGATCCATCACTGT
71099 CTTAACTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (17 bp):
TTTAGATCCATCACTGT
Found at i:71829 original size:23 final size:23
Alignment explanation
Indices: 71777--71829 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
71767 ACTCAGATTG
* *
71777 TTAAATTAATAATTTTATGTATG
1 TTAAATTAATAATTTTATATATA
*
71800 TTAAATTAATATTTTTATATATA
1 TTAAATTAATAATTTTATATATA
*
71823 TTTAATT
1 TTAAATT
71830 GATGATGTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (23 bp):
TTAAATTAATAATTTTATATATA
Found at i:74065 original size:55 final size:55
Alignment explanation
Indices: 73981--74090 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
73971 AGCACTATAG
73981 GAATATGGTGACAGCATATGTTTTATGCTTGACCTTTGAGAGACCATGCAATTAA
1 GAATATGGTGACAGCATATGTTTTATGCTTGACCTTTGAGAGACCATGCAATTAA
*
74036 GAATATGGTGACAGCATATGTTTTATGCTTGACCTTTGAGAGACCATGCAGTTAA
1 GAATATGGTGACAGCATATGTTTTATGCTTGACCTTTGAGAGACCATGCAATTAA
74091 TGAACCTTGA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (55 bp):
GAATATGGTGACAGCATATGTTTTATGCTTGACCTTTGAGAGACCATGCAATTAA
Found at i:76260 original size:29 final size:28
Alignment explanation
Indices: 76217--76297 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 28
76207 GATTTTGTGA
76217 TAAAAATTTGGGAAG-GTTAACTTAAAACTT
1 TAAAAATTT--GAAGAGTTAA-TTAAAACTT
* *
76247 TAAAATATTTGAAGATTTAATTAAAATTT
1 TAAAA-ATTTGAAGAGTTAATTAAAACTT
76276 TAAAAATTTTG-AGAGTTTAATT
1 TAAAAA-TTTGAAGAG-TTAATT
76298 TACTTTTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
28 4 0.09
29 27 0.61
30 9 0.20
31 4 0.09
ACGTcount: A:0.44, C:0.02, G:0.12, T:0.41
Consensus pattern (28 bp):
TAAAAATTTGAAGAGTTAATTAAAACTT
Found at i:76653 original size:20 final size:19
Alignment explanation
Indices: 76612--76649 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
76602 TAAATTATAA
*
76612 ATAAATATAAAGCTTAAAT
1 ATAAATATAAAGATTAAAT
76631 ATAAA-ATAAGAGATTAAAT
1 ATAAATATAA-AGATTAAAT
76650 TATATCACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.29
Consensus pattern (19 bp):
ATAAATATAAAGATTAAAT
Found at i:79599 original size:47 final size:47
Alignment explanation
Indices: 79538--79638 Score: 202
Period size: 47 Copynumber: 2.1 Consensus size: 47
79528 TATCTGATCC
79538 GATCCGAGTAACACATACTCGAATATCATATAATTGAATTCTGATTT
1 GATCCGAGTAACACATACTCGAATATCATATAATTGAATTCTGATTT
79585 GATCCGAGTAACACATACTCGAATATCATATAATTGAATTCTGATTT
1 GATCCGAGTAACACATACTCGAATATCATATAATTGAATTCTGATTT
79632 GATCCGA
1 GATCCGA
79639 ATGACAATAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (47 bp):
GATCCGAGTAACACATACTCGAATATCATATAATTGAATTCTGATTT
Found at i:79676 original size:16 final size:16
Alignment explanation
Indices: 79655--79699 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
79645 ATATTCAATA
79655 ACAAATATTCTGAAGC
1 ACAAATATTCTGAAGC
*
79671 ACAAATATTCTAAAGC
1 ACAAATATTCTGAAGC
79687 ACAAATATTCTGA
1 ACAAATATTCTGA
79700 TTCTGATATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.47, C:0.18, G:0.09, T:0.27
Consensus pattern (16 bp):
ACAAATATTCTGAAGC
Found at i:80456 original size:47 final size:47
Alignment explanation
Indices: 80348--80448 Score: 193
Period size: 47 Copynumber: 2.1 Consensus size: 47
80338 ATATTGTCAT
*
80348 TCGGATCAAATAAGAATTCAATTATATGATATTCGAGTATGTGTTAC
1 TCGGATCAAATCAGAATTCAATTATATGATATTCGAGTATGTGTTAC
80395 TCGGATCAAATCAGAATTCAATTATATGATATTCGAGTATGTGTTAC
1 TCGGATCAAATCAGAATTCAATTATATGATATTCGAGTATGTGTTAC
80442 TCGGATC
1 TCGGATC
80449 GGATCAGATA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.36
Consensus pattern (47 bp):
TCGGATCAAATCAGAATTCAATTATATGATATTCGAGTATGTGTTAC
Found at i:81254 original size:44 final size:44
Alignment explanation
Indices: 81204--81337 Score: 205
Period size: 44 Copynumber: 3.0 Consensus size: 44
81194 TGTTACCGAA
* *
81204 ATAAATGAAAATGCATAACGATGCATTATTGGCAGAAAGGTGCC
1 ATAAATGAAAATACATAACGGTGCATTATTGGCAGAAAGGTGCC
* *
81248 ATAAATGAAAATACATGACGGTGCATTATTGGCAGAAATGTGCC
1 ATAAATGAAAATACATAACGGTGCATTATTGGCAGAAAGGTGCC
* *
81292 ATAAATGAAAATACATAAAGGTGTATTATTGGCAGAAAAGGTGCC
1 ATAAATGAAAATACATAACGGTGCATTATTGGCAG-AAAGGTGCC
81337 A
1 A
81338 CTCGTGGTAT
Statistics
Matches: 81, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 72 0.89
45 9 0.11
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (44 bp):
ATAAATGAAAATACATAACGGTGCATTATTGGCAGAAAGGTGCC
Found at i:84355 original size:31 final size:31
Alignment explanation
Indices: 84317--84413 Score: 185
Period size: 31 Copynumber: 3.1 Consensus size: 31
84307 TGTATGCCAA
84317 ATTGTCCAAGTGTGAATTTTGGTTAGCTGAG
1 ATTGTCCAAGTGTGAATTTTGGTTAGCTGAG
84348 ATTGTCCAAGTGTGAATTTTGGTTAGCTGAG
1 ATTGTCCAAGTGTGAATTTTGGTTAGCTGAG
*
84379 ATTGTCCAAGTGTGAATTTTGGTTAGCTGAT
1 ATTGTCCAAGTGTGAATTTTGGTTAGCTGAG
84410 ATTG
1 ATTG
84414 CTTTCCTTGG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.23, C:0.09, G:0.28, T:0.40
Consensus pattern (31 bp):
ATTGTCCAAGTGTGAATTTTGGTTAGCTGAG
Found at i:90144 original size:157 final size:156
Alignment explanation
Indices: 89871--90380 Score: 584
Period size: 157 Copynumber: 3.3 Consensus size: 156
89861 GAACATGTGT
* * * * *
89871 TTCAAATTTAGTAAAATC-ATAATTAAAAT-AAGGATGAAATA-AAGAAATAAGGAAATTATAAA
1 TTCAAATTTGGTAAAAACGA-ACTTAAAATAAAGGATG-AATAGAAGAAAAAAAGAAATTATAAA
* *
89933 AAATTAAGGGACTAAATTGAAAAATAAAAAATTTGTTATCAAAAAGAGGAATTGAAAGTAGATAT
64 AAATTAAGGGACTAAATTGAAAAATAGAAAATTTGTTA-CAAAAAGAGGAATTGAAAGTACATAT
* *
89998 GTATTCTACGATGGTTTAGGAGTATTTGA
128 GTATTCTACGATGGTTTAGGAGCATATGA
* **
90027 TTCAAATTTGGTAAAAACGAAATTAAAATAAAGGAAT-AATAGAAGAAAAAAATTAATTATAAAA
1 TTCAAATTTGGTAAAAACGAACTTAAAATAAAGG-ATGAATAGAAGAAAAAAAGAAATTATAAAA
* * * *
90091 AATTGAGGGGCTAAATTAAAAAATAGAAAATTT-TTACCAAAAAGGAGGAATTGAAAGTACACAT
65 AATTAAGGGACTAAATTGAAAAATAGAAAATTTGTTA-CAAAAA-GAGGAATTGAAAGTACATAT
* *
90155 GTATTCTACAATGGTTTAGGAGCATATGT
128 GTATTCTACGATGGTTTAGGAGCATATGA
* * * * * *
90184 TTTAAATATGGTAAAAAAC-ATACTTAAAATAAATGATGAATTGAAGAAATAAGGAAATTAT-AA
1 TTCAAATTTGGT-AAAAACGA-ACTTAAAATAAAGGATGAATAGAAGAAAAAAAGAAATTATAAA
* * *
90247 AAATTAAGAGACTAAATTGAAAAATAGAAAATTTGTTATAAAAAAGAGGAATAGAAAGTACATAT
64 AAATTAAGGGACTAAATTGAAAAATAGAAAATTTGTTA-CAAAAAGAGGAATTGAAAGTACATAT
* * * *
90312 TTATTTTAAGATGGTTTAGGAGCATATGG
128 GTATTCTACGATGGTTTAGGAGCATATGA
* * *
90341 TTCAAATTTGGTAAAAATGTACTTAAAATAAAAGATGAAT
1 TTCAAATTTGGTAAAAACGAACTTAAAATAAAGGATGAAT
90381 TAAATGAATA
Statistics
Matches: 300, Mismatches: 44, Indels: 20
0.82 0.12 0.05
Matches are distributed among these distances:
156 62 0.21
157 192 0.64
158 46 0.15
ACGTcount: A:0.50, C:0.05, G:0.16, T:0.29
Consensus pattern (156 bp):
TTCAAATTTGGTAAAAACGAACTTAAAATAAAGGATGAATAGAAGAAAAAAAGAAATTATAAAAA
ATTAAGGGACTAAATTGAAAAATAGAAAATTTGTTACAAAAAGAGGAATTGAAAGTACATATGTA
TTCTACGATGGTTTAGGAGCATATGA
Found at i:106038 original size:59 final size:59
Alignment explanation
Indices: 105973--106112 Score: 151
Period size: 60 Copynumber: 2.4 Consensus size: 59
105963 GATTTTCAAT
*
105973 AAATAAATTTAACGATTTATTT-CTTTAT-TACAAAATAGAATCATACTTGA-TTCTCAAGA
1 AAATAAATTTAACGATTTATTTCCTTT-TCT-CAAAATAGAATCATACTTAATTTCT-AAGA
** * * *
106032 AAATAAATTTAATAATTTATTTTCCTTTTCTTAAAGTATAATCATACTTAATTTCTAAGA
1 AAATAAATTTAACGATTTA-TTTCCTTTTCTCAAAATAGAATCATACTTAATTTCTAAGA
**
106092 AAATAAATCCAACGATTTATT
1 AAATAAATTTAACGATTTATT
106113 GTATTGAATT
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
59 19 0.28
60 39 0.58
61 9 0.13
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.41
Consensus pattern (59 bp):
AAATAAATTTAACGATTTATTTCCTTTTCTCAAAATAGAATCATACTTAATTTCTAAGA
Found at i:107992 original size:45 final size:45
Alignment explanation
Indices: 107922--108125 Score: 205
Period size: 45 Copynumber: 4.5 Consensus size: 45
107912 CAAGGCTTTT
* * *
107922 GATTATTGAGTTGTC-AAAATCAAAATAAAAAGATTAGTTCGTTTC
1 GATTATTGGGTTG-CGAAAATTAAAATCAAAAGATTAGTTCGTTTC
* * *
107967 AATTATTGGGTTGCGAAAATTAAAATCAAATGATCAGTTCGTTTC
1 GATTATTGGGTTGCGAAAATTAAAATCAAAAGATTAGTTCGTTTC
* * *
108012 GATTATTGGATTGCGGAAATTATAATCAAAAGATTAGTTTC-TTTC
1 GATTATTGGGTTGCGAAAATTAAAATCAAAAGATTAG-TTCGTTTC
* * * * * * * *
108057 TATTATTGGATTGTGAAAATTAAAATCAAATGATGAATTCCTTTT
1 GATTATTGGGTTGCGAAAATTAAAATCAAAAGATTAGTTCGTTTC
* *
108102 GATTATTGAGTTGCTAAAATTAAA
1 GATTATTGGGTTGCGAAAATTAAA
108126 GGATTAATTC
Statistics
Matches: 131, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
44 4 0.03
45 124 0.95
46 3 0.02
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.38
Consensus pattern (45 bp):
GATTATTGGGTTGCGAAAATTAAAATCAAAAGATTAGTTCGTTTC
Found at i:108122 original size:90 final size:90
Alignment explanation
Indices: 107917--108125 Score: 262
Period size: 90 Copynumber: 2.3 Consensus size: 90
107907 TAATCCAAGG
* *
107917 CTTTTGATTATTGAGTTG-TCAAAATCAAAATAAAAAGATTAGTTCGTTTCAATTATTGGGTTGC
1 CTTTTGATTATTGAGTTGCT-AAAATTAAAATAAAAAGATTAGTTCGTTTCAATTATTGGATTGC
*
107981 GAAAATTAAAATCAAATGATCAGTTC
65 GAAAATTAAAATCAAATGATCAATTC
* * ** * * *
108007 GTTTCGATTATTG-GATTGCGGAAATTATAATCAAAAGATTAGTTTC-TTTCTATTATTGGATTG
1 CTTTTGATTATTGAG-TTGCTAAAATTAAAATAAAAAGATTAG-TTCGTTTCAATTATTGGATTG
* *
108070 TGAAAATTAAAATCAAATGATGAATTC
64 CGAAAATTAAAATCAAATGATCAATTC
108097 CTTTTGATTATTGAGTTGCTAAAATTAAA
1 CTTTTGATTATTGAGTTGCTAAAATTAAA
108126 GGATTAATTC
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
89 1 0.01
90 93 0.95
91 4 0.04
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (90 bp):
CTTTTGATTATTGAGTTGCTAAAATTAAAATAAAAAGATTAGTTCGTTTCAATTATTGGATTGCG
AAAATTAAAATCAAATGATCAATTC
Found at i:108392 original size:54 final size:56
Alignment explanation
Indices: 108259--108806 Score: 316
Period size: 58 Copynumber: 9.6 Consensus size: 56
108249 GAATCACTAG
* * *
108259 ATTTATTTCATCGTT-AGAATCTTGTACTGCTTCTAACTTTGTATGGAAAATAAATAATAGA
1 ATTTATTT-ATC-TTGAGAATCTTG-AATGATTCTAACTTTGTAAGGAAAATAAAT--TA-A
* *
108320 ATTTATTTCAT-TT-AGAATCTTAAATGATTTTAACTTTGTAAGGAAAATAAATT-A
1 ATTTATTT-ATCTTGAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAATTAA
* *
108374 ATTTATTTAT-TTGAGAATCTTAAATGATTCTAA-TATTATAA-G--AA-AAA-TAA
1 ATTTATTTATCTTGAGAATCTTGAATGATTCTAACT-TTGTAAGGAAAATAAATTAA
* * * * **
108424 A-TTA--TA--TTGAGAATCGTGGATGATTATATCTTT-TAAAAAGAAATAAATTGTTAA
1 ATTTATTTATCTTGAGAATCTTGAATGATTCTAACTTTGTAAGGA-AAATAAA---TTAA
* * * * *
108478 ATTTATTT-TGTCGAGAATCTTGGATGATTCTAACTTTGGAAGGAAAAATAAATAGTTGA
1 ATTTATTTATCTTGAGAATCTTGAATGATTCTAACTTTGTAAGG-AAAAT-AA-A-TTAA
* * * * *
108537 GTTTATTT-CCTTGATAATATTGAATGATTCTAACTTTGTAAGGAAAATAAATTATT
1 ATTTATTTATCTTGAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAATTA-A
* *
108593 TTTTAATTTATTTCCTTGAGAATCTTGAATGATTCTAGCTTTGTAAGGAAAATAAATTAA
1 ATTT-ATTTA--T-CTTGAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAATTAA
* * * * * *
108653 TTTTTAATTTATTTCCTTGAGAATCTTGAATTATTCTAAATTTATAAGAAAAATAAATCGTTGA
1 -ATTT-ATTTA--T-CTTGAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAA---TTAA
* *
108717 ATTTATTT-TCTTGAGAATCTAGAATGATTCTATCTTT-TAAAAGG-AAATAAATTGTTAA
1 ATTTATTTATCTTGAGAATCTTGAATGATTCTAACTTTGT--AAGGAAAATAAA---TTAA
108775 ATTTATTT-TCTTGAGAATCTT-AATTGATTCTA
1 ATTTATTTATCTTGAGAATCTTGAA-TGATTCTA
108807 TTTTTTAAAA
Statistics
Matches: 400, Mismatches: 52, Indels: 73
0.76 0.10 0.14
Matches are distributed among these distances:
45 3 0.01
46 20 0.05
47 3 0.01
49 6 0.01
50 8 0.02
51 2 0.00
53 6 0.01
54 37 0.09
55 5 0.01
56 5 0.01
57 10 0.03
58 118 0.29
59 59 0.15
60 3 0.01
61 105 0.26
62 4 0.01
63 3 0.01
64 3 0.01
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (56 bp):
ATTTATTTATCTTGAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAATTAA
Found at i:108626 original size:61 final size:60
Alignment explanation
Indices: 108470--108806 Score: 334
Period size: 61 Copynumber: 5.7 Consensus size: 60
108460 AAAGAAATAA
* ** * * *
108470 ATTGTTAAATTTATTTTGTCGAGAATCTTGGATGATTCTAACTTTGGAAGGAAAAATAAAT
1 ATTGTTGAATTTATTTCCTTGAGAATCTTGAATGATTCTAACTTTGTAAGG-AAAATAAAT
* * *
108531 A--GTTGAGTTTATTTCCTTGATAATATTGAATGATTCTAACTTTGTAAGGAAAATAAATT
1 ATTGTTGAATTTATTTCCTTGAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAA-T
* * *
108590 ATTTTTTAATTTATTTCCTTGAGAATCTTGAATGATTCTAGCTTTGTAAGGAAAATAAATT
1 ATTGTTGAATTTATTTCCTTGAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAA-T
* * * * *
108651 AATT-TTTAATTTATTTCCTTGAGAATCTTGAATTATTCTAAATTTATAAGAAAAAT-AA-
1 -ATTGTTGAATTTATTTCCTTGAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAAT
* * * *
108709 ATCGTTGAATTTATTTTCTTGAGAATCTAGAATGATTCTATCTTT-TAAAAGG-AAAT-AA-
1 ATTGTTGAATTTATTTCCTTGAGAATCTTGAATGATTCTAACTTTGT--AAGGAAAATAAAT
* *
108767 ATTGTTAAATTTATTTTCTTGAGAATCTT-AATTGATTCTA
1 ATTGTTGAATTTATTTCCTTGAGAATCTTGAA-TGATTCTA
108807 TTTTTTAAAA
Statistics
Matches: 237, Mismatches: 31, Indels: 19
0.83 0.11 0.07
Matches are distributed among these distances:
57 5 0.02
58 83 0.35
59 44 0.19
60 2 0.01
61 100 0.42
62 3 0.01
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (60 bp):
ATTGTTGAATTTATTTCCTTGAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAAT
Found at i:108747 original size:58 final size:58
Alignment explanation
Indices: 108430--108833 Score: 352
Period size: 58 Copynumber: 6.8 Consensus size: 58
108420 ATAAATTATA
* * * * * **
108430 TTGAGAATCGTGGATGATTATATCTTT-TAAAAAGAAATAAATTGTTAAATTTATTTTG
1 TTGAGAATCTTGAATGATTCTAACTTTGTAAGAA-AAATAAATTGTTAAATTTATTTCC
* * * * * *
108488 TCGAGAATCTTGGATGATTCTAACTTTGGAAGGAAAAATAAATAGTTGAGTTTATTTCC
1 TTGAGAATCTTGAATGATTCTAACTTTGTAA-GAAAAATAAATTGTTAAATTTATTTCC
* * * * *
108547 TTGATAATATTGAATGATTCTAACTTTGTAAGGAAAATAAATTATTTTTTAATTTATTTCC
1 TTGAGAATCTTGAATGATTCTAACTTTGTAAGAAAAAT-AA--ATTGTTAAATTTATTTCC
* * * *
108608 TTGAGAATCTTGAATGATTCTAGCTTTGTAAGGAAAATAAATTAATTTTTAATTTATTTCC
1 TTGAGAATCTTGAATGATTCTAACTTTGTAAGAAAAATAAA-T--TGTTAAATTTATTTCC
* * * * * *
108669 TTGAGAATCTTGAATTATTCTAAATTTATAAGAAAAATAAATCGTTGAATTTATTTTC
1 TTGAGAATCTTGAATGATTCTAACTTTGTAAGAAAAATAAATTGTTAAATTTATTTCC
* * *
108727 TTGAGAATCTAGAATGATTCTATCTTT-TAA-AAGGAAATAAATTGTTAAATTTATTTTC
1 TTGAGAATCTTGAATGATTCTAACTTTGTAAGAA--AAATAAATTGTTAAATTTATTTCC
* *
108785 TTGAGAATCTT-AATTGATTCT-ATTTTTTAA-AATGAAATAAATTGTTAAA
1 TTGAGAATCTTGAA-TGATTCTAACTTTGTAAGAA--AAATAAATTGTTAAA
108834 AGAAATAAAT
Statistics
Matches: 291, Mismatches: 43, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
56 2 0.01
57 8 0.03
58 125 0.43
59 50 0.17
60 5 0.02
61 101 0.35
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (58 bp):
TTGAGAATCTTGAATGATTCTAACTTTGTAAGAAAAATAAATTGTTAAATTTATTTCC
Found at i:108840 original size:17 final size:18
Alignment explanation
Indices: 108811--108850 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
108801 ATTCTATTTT
108811 TTAAAATGAAATAAATTG
1 TTAAAATGAAATAAATTG
108829 TTAAAA-GAAATAAATTG
1 TTAAAATGAAATAAATTG
108846 TTAAA
1 TTAAA
108851 TTTATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (18 bp):
TTAAAATGAAATAAATTG
Found at i:109236 original size:80 final size:80
Alignment explanation
Indices: 109101--109248 Score: 215
Period size: 80 Copynumber: 1.9 Consensus size: 80
109091 CAAATCATAA
* * * *
109101 AATTACACTCATTTTTATATTTGACCTTCTAATACAAATTAAACTCATAACTTAAAAGAGATAAA
1 AATTAAACTCATTTTCATATTTGACCTTCCAATAAAAATTAAACTCATAACTTAAAAGAGATAAA
109166 AAAAAATAAACATGG
66 AAAAAATAAACATGG
* * * * *
109181 AATTAAACTCGTTTTCATATTTGGCTTTCCAATAAAAATTAAACTCATAATTTAAAAGAGATTAA
1 AATTAAACTCATTTTCATATTTGACCTTCCAATAAAAATTAAACTCATAACTTAAAAGAGATAAA
109246 AAA
66 AAA
109249 TAAACATAGA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 59 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (80 bp):
AATTAAACTCATTTTCATATTTGACCTTCCAATAAAAATTAAACTCATAACTTAAAAGAGATAAA
AAAAAATAAACATGG
Found at i:109482 original size:21 final size:21
Alignment explanation
Indices: 109458--109498 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
109448 TTGCACACTT
109458 AATTTTAATCAGTTAGGATTA
1 AATTTTAATCAGTTAGGATTA
*
109479 AATTTTAATTAGTTAGGATT
1 AATTTTAATCAGTTAGGATT
109499 TTTTTTGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (21 bp):
AATTTTAATCAGTTAGGATTA
Found at i:117615 original size:21 final size:20
Alignment explanation
Indices: 117591--117644 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 20
117581 CTCAGAGGGA
*
117591 ACCGATTCCCCCCAAGGGGGT
1 ACCGATTCCCCCCAA-CGGGT
117612 ACCGATTCCCCCCCAACGGGT
1 ACCGATT-CCCCCCAACGGGT
117633 ACCGATTCCCCC
1 ACCGATTCCCCC
117645 TGAATGGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 5 0.16
21 18 0.58
22 8 0.26
ACGTcount: A:0.19, C:0.46, G:0.20, T:0.15
Consensus pattern (20 bp):
ACCGATTCCCCCCAACGGGT
Found at i:123401 original size:19 final size:20
Alignment explanation
Indices: 123377--123437 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 20
123367 ATTTTGGTGC
123377 TGAGGGAATCGA-TCCCCCA
1 TGAGGGAATCGATTCCCCCA
*
123396 TGAGGGAATCGATTCCCCCTT
1 TGAGGGAATCGATTCCCCC-A
*
123417 TGAAGGGGAACCGATTCCCCC
1 TG-A-GGGAATCGATTCCCCC
123438 CACAGGGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.33
20 6 0.17
21 2 0.06
22 1 0.03
23 15 0.42
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (20 bp):
TGAGGGAATCGATTCCCCCA
Found at i:125426 original size:25 final size:24
Alignment explanation
Indices: 125396--125481 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 24
125386 TTATTGCTTC
125396 AACTTTTTGGATTGTTTGATTTTG
1 AACTTTTTGGATTGTTTGATTTTG
125420 TAAC--TTTGGATTTGTTTGATGTTTG
1 -AACTTTTTGGA-TTGTTTGAT-TTTG
* *
125445 AA-TTTGTGGATTGATTGATTTTG
1 AACTTTTTGGATTGTTTGATTTTG
*
125468 AATTTTTTTGGATT
1 AA-CTTTTTGGATT
125482 TATGGATGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
23 12 0.23
24 19 0.37
25 21 0.40
ACGTcount: A:0.19, C:0.02, G:0.22, T:0.57
Consensus pattern (24 bp):
AACTTTTTGGATTGTTTGATTTTG
Found at i:125468 original size:23 final size:22
Alignment explanation
Indices: 125400--125473 Score: 94
Period size: 24 Copynumber: 3.2 Consensus size: 22
125390 TGCTTCAACT
125400 TTTTGGATTGTTTGATTTTGTAA
1 TTTTGGATTGTTTGATTTTG-AA
*
125423 CTTTGGATTTGTTTGATGTTTGAA
1 TTTTGGA-TTGTTTGAT-TTTGAA
*
125447 TTTGTGGATTGATTGATTTTGAA
1 TTT-TGGATTGTTTGATTTTGAA
125470 TTTT
1 TTTT
125474 TTTGGATTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
22 1 0.02
23 15 0.33
24 21 0.47
25 8 0.18
ACGTcount: A:0.18, C:0.01, G:0.23, T:0.58
Consensus pattern (22 bp):
TTTTGGATTGTTTGATTTTGAA
Found at i:128276 original size:16 final size:16
Alignment explanation
Indices: 128255--128289 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
128245 GTAGAGAAAA
128255 AAAATGGGAAGACGAG
1 AAAATGGGAAGACGAG
128271 AAAATGGGAAGACGAG
1 AAAATGGGAAGACGAG
128287 AAA
1 AAA
128290 TTGAAGGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.06, G:0.34, T:0.06
Consensus pattern (16 bp):
AAAATGGGAAGACGAG
Found at i:128462 original size:28 final size:27
Alignment explanation
Indices: 128415--128476 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
128405 ATTAATATTT
128415 TTTAA-TA-TTTTTAATAAAATATT-A
1 TTTAATTATTTTTTAATAAAATATTAA
*
128439 TTTAAATTATTTTTTATTAAAAATATTAA
1 TTT-AATTATTTTTTAAT-AAAATATTAA
128468 TTTAATTAT
1 TTTAATTAT
128477 CTAATTTCTG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
24 3 0.09
25 2 0.06
26 2 0.06
27 7 0.22
28 14 0.44
29 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TTTAATTATTTTTTAATAAAATATTAA
Found at i:133781 original size:10 final size:10
Alignment explanation
Indices: 133766--133816 Score: 60
Period size: 10 Copynumber: 5.7 Consensus size: 10
133756 GAGTGTTATG
133766 TTATTATATA
1 TTATTATATA
133776 TTATTATATA
1 TTATTATATA
133786 -TATTA-ATA
1 TTATTATATA
133794 -TA-TA-A-A
1 TTATTATATA
133800 TTATTATATA
1 TTATTATATA
133810 TTATTAT
1 TTATTAT
133817 TACAAATGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
6 1 0.03
7 5 0.14
8 7 0.19
9 6 0.16
10 18 0.49
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TTATTATATA
Found at i:133787 original size:12 final size:12
Alignment explanation
Indices: 133770--133818 Score: 71
Period size: 12 Copynumber: 4.0 Consensus size: 12
133760 GTTATGTTAT
133770 TATATATTATTA
1 TATATATTATTA
*
133782 TATATATTAATA
1 TATATATTATTA
*
133794 TATAAATTATTA
1 TATATATTATTA
133806 TATATTATTATTA
1 TATA-TATTATTA
133819 CAAATGGAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 25 0.78
13 7 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TATATATTATTA
Found at i:134291 original size:16 final size:17
Alignment explanation
Indices: 134267--134308 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
134257 TAATAAGACT
134267 AGTAATATTT-ATATTA
1 AGTAATATTTGATATTA
* *
134283 AGTATTATTTGATATTT
1 AGTAATATTTGATATTA
*
134300 AGTTATATT
1 AGTAATATT
134309 AAGCTTTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.55
Consensus pattern (17 bp):
AGTAATATTTGATATTA
Found at i:141498 original size:60 final size:60
Alignment explanation
Indices: 141384--141564 Score: 238
Period size: 60 Copynumber: 3.0 Consensus size: 60
141374 TTTTCCACGA
* * * * *
141384 ATTTGTAAAGCCTTCGGGTCATTTGTAAAGCCTTCAGGTCATTTGTAAAGCCTTCGGGTC
1 ATTTGTAAAGCCTTCGGGTCATTTGTAAATCCTTCGGGTAATTTATAAATCCTTCGGGTC
* *
141444 ATTTGTAAAGCCTTCGGGTCATTTGTAAATTCTTCGGGTAATTTTTAAATCCTTCGGGTC
1 ATTTGTAAAGCCTTCGGGTCATTTGTAAATCCTTCGGGTAATTTATAAATCCTTCGGGTC
** * * * *
141504 ATTTGTAAATTCTTCGGGTAATTTGTAAATCCTTCGAGTAATTTAT-AATCTTTTGGGTC
1 ATTTGTAAAGCCTTCGGGTCATTTGTAAATCCTTCGGGTAATTTATAAATCCTTCGGGTC
141563 AT
1 AT
141565 CTGTTAGTCT
Statistics
Matches: 107, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 13 0.12
60 94 0.88
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (60 bp):
ATTTGTAAAGCCTTCGGGTCATTTGTAAATCCTTCGGGTAATTTATAAATCCTTCGGGTC
Found at i:141547 original size:20 final size:20
Alignment explanation
Indices: 141384--141539 Score: 222
Period size: 20 Copynumber: 7.8 Consensus size: 20
141374 TTTTCCACGA
141384 ATTTGTAAAGCCTTCGGGTC
1 ATTTGTAAAGCCTTCGGGTC
*
141404 ATTTGTAAAGCCTTCAGGTC
1 ATTTGTAAAGCCTTCGGGTC
141424 ATTTGTAAAGCCTTCGGGTC
1 ATTTGTAAAGCCTTCGGGTC
141444 ATTTGTAAAGCCTTCGGGTC
1 ATTTGTAAAGCCTTCGGGTC
** *
141464 ATTTGTAAATTCTTCGGGTA
1 ATTTGTAAAGCCTTCGGGTC
* *
141484 ATTTTTAAATCCTTCGGGTC
1 ATTTGTAAAGCCTTCGGGTC
** *
141504 ATTTGTAAATTCTTCGGGTA
1 ATTTGTAAAGCCTTCGGGTC
*
141524 ATTTGTAAATCCTTCG
1 ATTTGTAAAGCCTTCG
141540 AGTAATTTAT
Statistics
Matches: 124, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 124 1.00
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (20 bp):
ATTTGTAAAGCCTTCGGGTC
Found at i:141961 original size:190 final size:189
Alignment explanation
Indices: 141613--142079 Score: 564
Period size: 190 Copynumber: 2.4 Consensus size: 189
141603 AATCAAAATC
* *
141613 CACGGAAGAGTAGTGGAAGTAAATCCAACTTTGAATCTGATCTTCACGGAAGAGTAATGAAATTA
1 CACGGAAGAGTAGT-GAAGT-AATCCAA-TTTGAATCTAATCTTCACGGAAGAGTAGTGAAATTA
* ** * *
141678 GATTCTTATCAATTTTGTCATT-TCAGCCTTCATAGAAGAGCAGTGAAGCAAAAGCAAGAGCAAG
63 GATTCTTATCAAGTTAATCATTCTCAGCCTTCACAGAAGAACAGTGAAGCAAAAGCAAGAGCAAG
* * * *
141742 ATTAAAATTCACTCTCCATAAAAGAGTAGTGGAATGGATATTTT-AGCAAAGTATGCAATCTT
128 ATTAAAATTCACTCTCCACAAAAGAGTAGTGGAA-CGAAATTTTCAGCAAAGTATGAAATCTT
** * *
141804 CACGGAAGAGTAGTGAAGTAATCTGATTTCGAGTCTAATCCTCACGGAAGAGTAGTGAAATTAGA
1 CACGGAAGAGTAGTGAAGTAATCCAATTT-GAATCTAATCTTCACGGAAGAGTAGTGAAATTAGA
* * * * *
141869 TTCTTATCAAGTTAATCATTCTCAGTCTTCACGGAAGAATAGTGAAGCAAGAG-TAGAAGCAA-A
65 TTCTTATCAAGTTAATCATTCTCAGCCTTCACAGAAGAACAGTGAAGCAAAAGCAAG-AGCAAGA
* * **
141932 GTTAGAATTCGCTCTCCACGGAAGAGTAGTGGAACGAAATTTTCAGCAAAGTATGAAATCTT
129 -TTAAAATTCACTCTCCACAAAAGAGTAGTGGAACGAAATTTTCAGCAAAGTATGAAATCTT
* * * *
141994 CACGGAAGAGTAATGAAGTAATCCAATTGTGACTATAATCTTCACGAAAGAGTAGTGAAATTAGA
1 CACGGAAGAGTAGTGAAGTAATCCAATT-TGAATCTAATCTTCACGGAAGAGTAGTGAAATTAGA
* *
142059 TTCCTATTAAGTTAATCATTC
65 TTCTTATCAAGTTAATCATTC
142080 AATTTTTGAG
Statistics
Matches: 237, Mismatches: 33, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
188 3 0.01
189 63 0.27
190 156 0.66
191 15 0.06
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.28
Consensus pattern (189 bp):
CACGGAAGAGTAGTGAAGTAATCCAATTTGAATCTAATCTTCACGGAAGAGTAGTGAAATTAGAT
TCTTATCAAGTTAATCATTCTCAGCCTTCACAGAAGAACAGTGAAGCAAAAGCAAGAGCAAGATT
AAAATTCACTCTCCACAAAAGAGTAGTGGAACGAAATTTTCAGCAAAGTATGAAATCTT
Found at i:142172 original size:51 final size:47
Alignment explanation
Indices: 142089--142204 Score: 119
Period size: 47 Copynumber: 2.4 Consensus size: 47
142079 CAATTTTTGA
* *
142089 GGAAGAGTAGTGAAACAAATTCTGTTCAAGTCATGTAAATTCAGCCTTCAC
1 GGAAGAGTAGTGAAGCAAATTCTGTTCAAGTCA--T--ACTCAGCCTTCAC
* *
142140 GGAAGAGTAGTGAAGCAAA-TCAT-TTGCCAGTCATCCTCAGCCTTCAC
1 GGAAGAGTAGTGAAGCAAATTC-TGTT-CAAGTCATACTCAGCCTTCAC
*
142187 AGAAGAGTAGTGAAGCAA
1 GGAAGAGTAGTGAAGCAA
142205 GAGCACAATC
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
47 28 0.48
49 1 0.02
50 4 0.07
51 25 0.43
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.23
Consensus pattern (47 bp):
GGAAGAGTAGTGAAGCAAATTCTGTTCAAGTCATACTCAGCCTTCAC
Found at i:142394 original size:10 final size:10
Alignment explanation
Indices: 142379--142429 Score: 51
Period size: 10 Copynumber: 5.7 Consensus size: 10
142369 GAGTGTTATG
142379 TTATTATATA
1 TTATTATATA
142389 TTATTATATA
1 TTATTATATA
142399 -TATTA-ATA
1 TTATTATATA
142407 -TA-TA-A-A
1 TTATTATATA
142413 TTATTATATA
1 TTATTATATA
*
142423 ATATTAT
1 TTATTAT
142430 TACAAATAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
6 1 0.03
7 5 0.14
8 7 0.19
9 6 0.17
10 17 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
TTATTATATA
Found at i:142400 original size:12 final size:12
Alignment explanation
Indices: 142383--142431 Score: 71
Period size: 12 Copynumber: 4.0 Consensus size: 12
142373 GTTATGTTAT
142383 TATATATTATTA
1 TATATATTATTA
*
142395 TATATATTAATA
1 TATATATTATTA
*
142407 TATAAATTATTA
1 TATATATTATTA
142419 TATAATATTATTA
1 TAT-ATATTATTA
142432 CAAATAGAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 24 0.75
13 8 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TATATATTATTA
Found at i:147655 original size:102 final size:102
Alignment explanation
Indices: 147479--147685 Score: 387
Period size: 102 Copynumber: 2.0 Consensus size: 102
147469 CTTTGATAGA
*
147479 TCTCGATTCCACTCACTCCTACATTTGTTCCAACTTAGTCCGAGAGATGGAAATCCTAGCAGAAG
1 TCTCGATTCCACTCACTCATACATTTGTTCCAACTTAGTCCGAGAGATGGAAATCCTAGCAGAAG
*
147544 ACTTAAAGGTAGGAGTTCGAGTGTCAAGCCCTCTAGG
66 ACTTAAAGGTAGGAGTTCAAGTGTCAAGCCCTCTAGG
*
147581 TCTCGATTCCACTCACTCATACATTTGTTCCAACTTAGTCCGAGAGATGGAAATCCTAGCATAAG
1 TCTCGATTCCACTCACTCATACATTTGTTCCAACTTAGTCCGAGAGATGGAAATCCTAGCAGAAG
147646 ACTTAAAGGTAGGAGTTCAAGTGTCAAGCCCTCTAGG
66 ACTTAAAGGTAGGAGTTCAAGTGTCAAGCCCTCTAGG
147683 TCT
1 TCT
147686 AAATGTTGTC
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 102 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (102 bp):
TCTCGATTCCACTCACTCATACATTTGTTCCAACTTAGTCCGAGAGATGGAAATCCTAGCAGAAG
ACTTAAAGGTAGGAGTTCAAGTGTCAAGCCCTCTAGG
Found at i:160494 original size:29 final size:29
Alignment explanation
Indices: 160447--160512 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
160437 GTTGATGTCA
*
160447 CATTATATTCTTCTC-TTTTTCTTTCCATT
1 CATT-TATTCTTCTCTTTTTTCTTCCCATT
*
160476 CACTTTATT-TTCTTCTTTTTTCTTCCCTTT
1 CA-TTTATTCTTC-TCTTTTTTCTTCCCATT
160506 CATTTAT
1 CATTTAT
160513 CTCCTAACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 3 0.09
29 13 0.41
30 16 0.50
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (29 bp):
CATTTATTCTTCTCTTTTTTCTTCCCATT
Found at i:160498 original size:30 final size:31
Alignment explanation
Indices: 160444--160512 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
160434 GATGTTGATG
* *
160444 TCACATTATATTCTTCTCTTTTTCTTTCCAT
1 TCACTTTATATTCTTCTCTTTTTCTTCCCAT
* *
160475 TCACTTTATTTTCTTCT-TTTTTCTTCCCTT
1 TCACTTTATATTCTTCTCTTTTTCTTCCCAT
160505 TCA-TTTAT
1 TCACTTTAT
160513 CTCCTAACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 5 0.15
30 14 0.41
31 15 0.44
ACGTcount: A:0.13, C:0.25, G:0.00, T:0.62
Consensus pattern (31 bp):
TCACTTTATATTCTTCTCTTTTTCTTCCCAT
Found at i:168881 original size:11 final size:11
Alignment explanation
Indices: 168841--168880 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
168831 AATTTTATTA
168841 AAAATGAATGC
1 AAAATGAATGC
*
168852 AAAATGAATGT
1 AAAATGAATGC
* *
168863 AGAATGAGTGC
1 AAAATGAATGC
168874 AAAATGA
1 AAAATGA
168881 GGTACCTCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.53, C:0.05, G:0.23, T:0.20
Consensus pattern (11 bp):
AAAATGAATGC
Found at i:172973 original size:19 final size:20
Alignment explanation
Indices: 172944--172998 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 20
172934 AATCTAATTT
*
172944 TGGTATTGATACCAGTAGGG
1 TGGTATCGATACCAGTAGGG
172964 -GGTATCGATACCGTAGTAGGG
1 TGGTATCGATACC--AGTAGGG
*
172985 TAGTATCGATACCA
1 TGGTATCGATACCA
172999 TGGAAAGGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 11 0.37
20 1 0.03
21 7 0.23
22 11 0.37
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (20 bp):
TGGTATCGATACCAGTAGGG
Found at i:172993 original size:22 final size:21
Alignment explanation
Indices: 172957--172997 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
172947 TATTGATACC
*
172957 AGTAGGGGGTATCGATACCGT
1 AGTAGGGAGTATCGATACCGT
172978 AGTAGGGTAGTATCGATACC
1 AGTAGGG-AGTATCGATACC
172998 ATGGAAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.27, C:0.15, G:0.34, T:0.24
Consensus pattern (21 bp):
AGTAGGGAGTATCGATACCGT
Found at i:173505 original size:55 final size:55
Alignment explanation
Indices: 173446--173626 Score: 256
Period size: 55 Copynumber: 3.3 Consensus size: 55
173436 ACATTCACGT
173446 AATTCATCATGAGTGGATGAATCACCGTATAGGAACTTCGTGTGCATATTTACAG
1 AATTCATCATGAGTGGATGAATCACCGTATAGGAACTTCGTGTGCATATTTACAG
* * * * * *
173501 AATTCATCCTAAGTGGATAAATCACCATACA-GACACTTCGTGTGCATATTCACAG
1 AATTCATCATGAGTGGATGAATCACCGTATAGGA-ACTTCGTGTGCATATTTACAG
* * * *
173556 AATTCATCCTGAGTGGATGAATCACCGTATAGGCACTTCATGTGCATATTTACGG
1 AATTCATCATGAGTGGATGAATCACCGTATAGGAACTTCGTGTGCATATTTACAG
173611 AATTCATCATGAGTGG
1 AATTCATCATGAGTGG
173627 TCACCATACA
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
54 2 0.02
55 106 0.97
56 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (55 bp):
AATTCATCATGAGTGGATGAATCACCGTATAGGAACTTCGTGTGCATATTTACAG
Found at i:173614 original size:110 final size:110
Alignment explanation
Indices: 173418--173618 Score: 323
Period size: 110 Copynumber: 1.8 Consensus size: 110
173408 TTATGTGTAC
*
173418 TACAGGCACTTCATGTGCACATTCACGTAATTCATCATGAGTGGATGAATCACCGTATAGGAACT
1 TACAGACACTTCATGTGCACATTCACGTAATTCATCATGAGTGGATGAATCACCGTATAGGAACT
*
173483 TCGTGTGCATATTTACAGAATTCATCCTAAGTGGATAAATCACCA
66 TCATGTGCATATTTACAGAATTCATCCTAAGTGGATAAATCACCA
* * * *
173528 TACAGACACTTCGTGTGCATATTCACAG-AATTCATCCTGAGTGGATGAATCACCGTATAGGCAC
1 TACAGACACTTCATGTGCACATTCAC-GTAATTCATCATGAGTGGATGAATCACCGTATAGGAAC
*
173592 TTCATGTGCATATTTACGGAATTCATC
65 TTCATGTGCATATTTACAGAATTCATC
173619 ATGAGTGGTC
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
110 82 0.99
111 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (110 bp):
TACAGACACTTCATGTGCACATTCACGTAATTCATCATGAGTGGATGAATCACCGTATAGGAACT
TCATGTGCATATTTACAGAATTCATCCTAAGTGGATAAATCACCA
Found at i:182101 original size:55 final size:55
Alignment explanation
Indices: 182008--182246 Score: 300
Period size: 55 Copynumber: 4.3 Consensus size: 55
181998 CTATATGTAC
* *
182008 TACAGGCACTTCGTGTACATATTCACGGAATTCATCCTAAGTGGATGAATCACCG
1 TACAGGCACTTCGTGTGCATATTCACAGAATTCATCCTAAGTGGATGAATCACCG
* * * * ** *
182063 TAGAGGAACTTCGTATGCATATTCACAAAATTTTTCCTAAGTGGATGAATCATCG
1 TACAGGCACTTCGTGTGCATATTCACAGAATTCATCCTAAGTGGATGAATCACCG
* * * * *
182118 TACAGGCACTTCGTGTGCATATTCACGGAATTTATCCTGAGTGGATGAATGATCG
1 TACAGGCACTTCGTGTGCATATTCACAGAATTCATCCTAAGTGGATGAATCACCG
* * * *
182173 TACAGGCACTTTGTGTGCATAGTCACAGAATTCATCCTGAGTGGATAAATCACCG
1 TACAGGCACTTCGTGTGCATATTCACAGAATTCATCCTAAGTGGATGAATCACCG
182228 TACAGGCACTAT-GTGTGCA
1 TACAGGCACT-TCGTGTGCA
182247 ACCCACGGAA
Statistics
Matches: 159, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
55 158 0.99
56 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (55 bp):
TACAGGCACTTCGTGTGCATATTCACAGAATTCATCCTAAGTGGATGAATCACCG
Found at i:182216 original size:110 final size:110
Alignment explanation
Indices: 182008--182276 Score: 335
Period size: 110 Copynumber: 2.5 Consensus size: 110
181998 CTATATGTAC
* * *
182008 TACAGGCACTTCGTGTACATATTCACGGAATTCATCCTAAGTGGATGAATCACCGTAGAGGAACT
1 TACAGGCACTTCGTGTGCATATTCACGGAATTCATCCTGAGTGGATGAATCACCGTACAGGAACT
* ** * *
182073 TCGTATGCATATTCACAAAATTTTTCCTAAGTGGATGAATCATCG
66 TCGTATGCATAGTCACAAAATTCATCCTAAGTGGATAAATCACCG
* * * *
182118 TACAGGCACTTCGTGTGCATATTCACGGAATTTATCCTGAGTGGATGAATGATCGTACAGGCACT
1 TACAGGCACTTCGTGTGCATATTCACGGAATTCATCCTGAGTGGATGAATCACCGTACAGGAACT
* * * *
182183 TTGTGTGCATAGTCACAGAATTCATCCTGAGTGGATAAATCACCG
66 TCGTATGCATAGTCACAAAATTCATCCTAAGTGGATAAATCACCG
** * *
182228 TACAGGCACTAT-GTGTGCA-ACCCACGGAATTCATCATGAGTTGATGAAT
1 TACAGGCACT-TCGTGTGCATATTCACGGAATTCATCCTGAGTGGATGAAT
182277 TTCTGTATAG
Statistics
Matches: 137, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
109 25 0.18
110 111 0.81
111 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (110 bp):
TACAGGCACTTCGTGTGCATATTCACGGAATTCATCCTGAGTGGATGAATCACCGTACAGGAACT
TCGTATGCATAGTCACAAAATTCATCCTAAGTGGATAAATCACCG
Found at i:182289 original size:54 final size:54
Alignment explanation
Indices: 182008--182276 Score: 213
Period size: 55 Copynumber: 4.9 Consensus size: 54
181998 CTATATGTAC
* ** * *
182008 TACAGGCACT-TCGTGTACATATTCACGGAATTCATCCTAAGTGGATGAATCACCG
1 TACAGGCACTAT-GTGTGCATACCCACGGAATTCATCCTGAGTGGATGAAT-ATCG
* * * ** ** ** *
182063 TAGAGGAACT-TCGTATGCATATTCACAAAATTTTTCCTAAGTGGATGAATCATCG
1 TACAGGCACTAT-GTGTGCATACCCACGGAATTCATCCTGAGTGGATGAAT-ATCG
** *
182118 TACAGGCACT-TCGTGTGCATATTCACGGAATTTATCCTGAGTGGATGAATGATCG
1 TACAGGCACTAT-GTGTGCATACCCACGGAATTCATCCTGAGTGGATGAAT-ATCG
* ** * * *
182173 TACAGGCACTTTGTGTGCATAGTCACAGAATTCATCCTGAGTGGATAAATCACCG
1 TACAGGCACTATGTGTGCATACCCACGGAATTCATCCTGAGTGGATGAAT-ATCG
* *
182228 TACAGGCACTATGTGTGCA-ACCCACGGAATTCATCATGAGTTGATGAAT
1 TACAGGCACTATGTGTGCATACCCACGGAATTCATCCTGAGTGGATGAAT
182277 TTCTGTATAG
Statistics
Matches: 183, Mismatches: 30, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
54 24 0.13
55 158 0.86
56 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (54 bp):
TACAGGCACTATGTGTGCATACCCACGGAATTCATCCTGAGTGGATGAATATCG
Found at i:187180 original size:20 final size:20
Alignment explanation
Indices: 187155--187203 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
187145 GATGCAATTA
187155 GTATCGATACTAAGAGAAAG
1 GTATCGATACTAAGAGAAAG
*
187175 GTATCGACACTAAGAGAAAG
1 GTATCGATACTAAGAGAAAG
*
187195 GTATTGATA
1 GTATCGATA
187204 TTATCGATCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.43, C:0.10, G:0.24, T:0.22
Consensus pattern (20 bp):
GTATCGATACTAAGAGAAAG
Found at i:187695 original size:54 final size:54
Alignment explanation
Indices: 187608--188005 Score: 476
Period size: 54 Copynumber: 7.4 Consensus size: 54
187598 TATGTATTGC
* *
187608 AATTATCGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATG
1 AATTTTCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATG
* * *
187662 AATTTTCGTATTGGCACTATATGTGTAACCTAAGAAATTCATAATGAGTTTATG
1 AATTTTCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATG
* * *
187716 AATTTTCGTATTGGCATTGTGTGTGCAACCTAAGAAATTCATAATAAGTTTACG
1 AATTTTCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATG
* *
187770 AATTTTCGTATTGGCACTGTGTGTACAACCTAAGAAATTCATAATAAGTTTATG
1 AATTTTCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATG
* * * * * *
187824 AA-TTTCTGTATTGGCATTACGTATGGAACCTAAAAAATTCGTAATAAGTTTATG
1 AATTTTC-GTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATG
* * * *
187878 AATTTTCATATTTGCACTGTGTGTACAACCTAAGAAATTCATAATAAGTTTATG
1 AATTTTCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATG
* * * ** * * * * *
187932 AATTTCCATATTGGCATTAAATGTGCAACCCCACGTAATTCATAATGAGTTTGTG
1 AATTTTCGTATTGGCACTATGTGTGCAA-CCTAAGAAATTCATAATAAGTTTATG
*
187987 AA-TTACTGTATTGGCACTA
1 AATTTTC-GTATTGGCACTA
188006 CAGATGCAAA
Statistics
Matches: 293, Mismatches: 47, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
53 4 0.01
54 252 0.86
55 37 0.13
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (54 bp):
AATTTTCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTTATG
Found at i:190014 original size:15 final size:16
Alignment explanation
Indices: 189994--190029 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
189984 ATTACTTAGC
189994 GCGTG-TTAATTTCAA
1 GCGTGATTAATTTCAA
190009 GCGTGTATTAATTTCAA
1 GCGTG-ATTAATTTCAA
190026 GCGT
1 GCGT
190030 AGGTTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
17 14 0.74
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (16 bp):
GCGTGATTAATTTCAA
Found at i:191012 original size:20 final size:20
Alignment explanation
Indices: 190989--191040 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
190979 CTAAATGCAA
*
190989 CTATATGCACCTAAAATGAC
1 CTATATGAACCTAAAATGAC
191009 CTATATGAACCTAAAATGAC
1 CTATATGAACCTAAAATGAC
191029 CTATATGAACCT
1 CTATATGAACCT
191041 TTAGACAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (20 bp):
CTATATGAACCTAAAATGAC
Found at i:191217 original size:23 final size:23
Alignment explanation
Indices: 191187--191236 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
191177 CAAGGTTAAC
191187 ATTT-TAAGG-TTAATGATTTACG
1 ATTTATAAGGATTAATG-TTTACG
191209 ATTTATAAGGATTAATGTTTACG
1 ATTTATAAGGATTAATGTTTACG
191232 ATTTA
1 ATTTA
191237 GGTTAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 4 0.15
23 16 0.62
24 6 0.23
ACGTcount: A:0.34, C:0.04, G:0.16, T:0.46
Consensus pattern (23 bp):
ATTTATAAGGATTAATGTTTACG
Found at i:196519 original size:27 final size:27
Alignment explanation
Indices: 196481--196533 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
196471 CGGTTCTCAT
196481 TTGGTTTTCTGGTTCTTGTAAGGGGTG
1 TTGGTTTTCTGGTTCTTGTAAGGGGTG
196508 TTGGTTTTCTGGTTCTTGTAAGGGGT
1 TTGGTTTTCTGGTTCTTGTAAGGGGT
196534 ATTACTGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.08, C:0.08, G:0.36, T:0.49
Consensus pattern (27 bp):
TTGGTTTTCTGGTTCTTGTAAGGGGTG
Found at i:201573 original size:14 final size:14
Alignment explanation
Indices: 201554--201581 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
201544 AAGTGAAAGA
201554 ATAGTTATATAATT
1 ATAGTTATATAATT
201568 ATAGTTATATAATT
1 ATAGTTATATAATT
201582 TTGTTATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
ATAGTTATATAATT
Found at i:202601 original size:48 final size:49
Alignment explanation
Indices: 202513--202614 Score: 143
Period size: 48 Copynumber: 2.1 Consensus size: 49
202503 ATGCACATCT
* *
202513 CCAACCTAAAAATAAATATATACTTACACCGGTGTAAGTATGTATATATC
1 CCAACCTAAAAATAAACACATAC-TACACCGGTGTAAGTATGTATATATC
* * *
202563 CCAACCTAAAAATAAGCACATAC-ACACCTGTGTAAGTATGTATATCTC
1 CCAACCTAAAAATAAACACATACTACACCGGTGTAAGTATGTATATATC
202611 CCAA
1 CCAA
202615 TATTTTAGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 27 0.57
50 20 0.43
ACGTcount: A:0.41, C:0.23, G:0.10, T:0.26
Consensus pattern (49 bp):
CCAACCTAAAAATAAACACATACTACACCGGTGTAAGTATGTATATATC
Found at i:203907 original size:27 final size:29
Alignment explanation
Indices: 203877--203932 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
203867 TACAAAAGAG
*
203877 CATATTAAATTA-TTTAACTACA-TAAAT
1 CATAATAAATTATTTTAACTACATTAAAT
* *
203904 CATAATAACTTATTTTAATTACATTAAAT
1 CATAATAAATTATTTTAACTACATTAAAT
203933 GTTATATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.42
28 9 0.38
29 5 0.21
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (29 bp):
CATAATAAATTATTTTAACTACATTAAAT
Found at i:204636 original size:19 final size:19
Alignment explanation
Indices: 204590--204636 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
204580 ATTTTATGCA
204590 ATTATTTTATTTTAGTATTT
1 ATTA-TTTATTTTAGTATTT
* *
204610 ATTTTTTATTTT-TTATTT
1 ATTATTTATTTTAGTATTT
204628 GATTATTTA
1 -ATTATTTA
204637 ATTGTAAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 5 0.22
19 15 0.65
20 3 0.13
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTATTTATTTTAGTATTT
Found at i:206979 original size:26 final size:26
Alignment explanation
Indices: 206943--206995 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
206933 GAGACAGACA
*
206943 TCGATAGATCTAATAAAATTGTAATC
1 TCGATAAATCTAATAAAATTGTAATC
206969 TCGATAAATCTAATAAAATTGTAATC
1 TCGATAAATCTAATAAAATTGTAATC
206995 T
1 T
206996 TTTCATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (26 bp):
TCGATAAATCTAATAAAATTGTAATC
Found at i:210788 original size:21 final size:19
Alignment explanation
Indices: 210750--210788 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
210740 TATATTCTTT
*
210750 CTTTCATATACTTTCATAA
1 CTTTCATATACCTTCATAA
210769 CTTTCATATTTACCTTCATA
1 CTTTCATA--TACCTTCATA
210789 GTCTAATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.49
Consensus pattern (19 bp):
CTTTCATATACCTTCATAA
Found at i:213157 original size:37 final size:32
Alignment explanation
Indices: 213086--213149 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
213076 TTTGAATACA
*
213086 TAGTCCAATATCCAAACATAATTAAAAAATGT
1 TAGTCCAACATCCAAACATAATTAAAAAATGT
213118 TAGTCCAACATCCAAACATAATTAAAAAATGT
1 TAGTCCAACATCCAAACATAATTAAAAAATGT
213150 CATGTTAGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.27
Consensus pattern (32 bp):
TAGTCCAACATCCAAACATAATTAAAAAATGT
Found at i:213358 original size:62 final size:62
Alignment explanation
Indices: 213230--213481 Score: 295
Period size: 62 Copynumber: 4.0 Consensus size: 62
213220 TGAAAAAAAT
* *
213230 AATAATCGAGTGAACAAA-ACAAATTAGATAATATATAAGTGACCAAATAGGTA-TTTACCCT-
1 AATAATCGAGTGACCAAACATAAATTAGAT-A-ATATAAGTGACCAAATAGGTAGTTTACCCTA
*
213291 AATAATCGAGTGACCAAA-ATATAATTAGATAATATAAGTGACCAAATAAGTAGTTTACCCTA
1 AATAATCGAGTGACCAAACATA-AATTAGATAATATAAGTGACCAAATAGGTAGTTTACCCTA
* *
213353 AATAATATCG-GTGACCAAACATAGATTAGATAATATTAAAGTGACCATATAGGTAGTTTACCCT
1 AAT-A-ATCGAGTGACCAAACATAAATTAGATAATA-T-AAGTGACCAAATAGGTAGTTTACCCT
213417 AAAA
62 ---A
* *
213421 AACAATCGAGTGACCAAACATAAATTAGAT-ATAT-A-TGACCCAATAGGTAGTTTACCCTA
1 AATAATCGAGTGACCAAACATAAATTAGATAATATAAGTGACCAAATAGGTAGTTTACCCTA
213480 AA
1 AA
213482 AAAATCCCTA
Statistics
Matches: 169, Mismatches: 10, Indels: 26
0.82 0.05 0.13
Matches are distributed among these distances:
59 3 0.02
60 20 0.12
61 28 0.17
62 32 0.19
63 22 0.13
64 8 0.05
65 25 0.15
66 7 0.04
67 21 0.12
68 3 0.02
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (62 bp):
AATAATCGAGTGACCAAACATAAATTAGATAATATAAGTGACCAAATAGGTAGTTTACCCTA
Found at i:213397 original size:125 final size:125
Alignment explanation
Indices: 213226--213481 Score: 328
Period size: 125 Copynumber: 2.0 Consensus size: 125
213216 ATTTTGAAAA
213226 AAATAATAATCGAGTGAACAAAACAAATTAGATAATATATAAGTGACCAAATAGGTA-TTTACCC
1 AAATAATAATCGAGTGAACAAAACAAATTAGATAATATATAAGTGACCAAATAGGTAGTTTACCC
*
213290 T-AATAATCGAGTGACCAAA-ATATAATTAGATAATATAAGTGACCAAATAAGTAGTTTACCCT
66 TAAACAATCGAGTGACCAAACATA-AATTAGAT-ATAT-A-TGACCAAATAAGTAGTTTACCCT
* *
213352 AAATAAT-ATCG-GTG-ACCAAACATAGATTAGATAATAT-TAAAGTGACCATATAGGTAGTTTA
1 AAATAATAATCGAGTGAACAAAACA-A-ATTAGATAATATAT-AAGTGACCAAATAGGTAGTTTA
* *
213413 CCCTAAAAAACAATCGAGTGACCAAACATAAATTAGATATATATGACCCAATAGGTAGTTTACCC
63 CCCT---AAACAATCGAGTGACCAAACATAAATTAGATATATATGACCAAATAAGTAGTTTACCC
213478 T
125 T
213479 AAA
1 AAA
213482 AAAATCCCTA
Statistics
Matches: 116, Mismatches: 5, Indels: 17
0.84 0.04 0.12
Matches are distributed among these distances:
123 7 0.06
124 5 0.04
125 32 0.28
126 15 0.13
127 24 0.21
128 1 0.01
129 4 0.03
130 25 0.22
131 3 0.03
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (125 bp):
AAATAATAATCGAGTGAACAAAACAAATTAGATAATATATAAGTGACCAAATAGGTAGTTTACCC
TAAACAATCGAGTGACCAAACATAAATTAGATATATATGACCAAATAAGTAGTTTACCCT
Found at i:215579 original size:46 final size:46
Alignment explanation
Indices: 215469--215773 Score: 289
Period size: 46 Copynumber: 6.7 Consensus size: 46
215459 ATTATTCGTA
* *
215469 ATTTTAGTTATGACATCCTTTTATGCCTTAATG-ATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* * *
215514 A-TTTAGTTATGGAATCCTTTCATGTCTTAATGCACCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* **
215559 ATTTTAGTTGTGGCATCCTTTCATGCCTTAATGCATATTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
*
215605 ATTTTAGTTATGGCATCCTTTTATGCCTTAATGCATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
215651 --CTTA---AT-GCATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGC--CTTA---ATG-CATCCTTTCATGC
* *
215697 --CTTA---AT-GCATCCTTTCATGCATTTAGTTATGGCATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGC-CTTA---AT-GCATCCTTTCATGC
215742 A-TTTAGTTATGGCATCCTTTCATGCCTTAATG
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATG
215774 ATAACATATT
Statistics
Matches: 225, Mismatches: 21, Indels: 28
0.82 0.08 0.10
Matches are distributed among these distances:
40 13 0.06
41 2 0.01
42 3 0.01
44 30 0.13
45 39 0.17
46 119 0.53
49 5 0.02
50 14 0.06
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (46 bp):
ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
Found at i:215600 original size:20 final size:20
Alignment explanation
Indices: 215571--215773 Score: 145
Period size: 20 Copynumber: 9.1 Consensus size: 20
215561 TTTAGTTGTG
215571 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
** *
215591 GCATATTTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
*
215616 GGCATCCTTTTATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
215637 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
*
215657 GCATCCTTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
215682 GACATCCTTTCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
*
215703 GCATCCTTTCATGCATTTAGTTAT
1 GCATCCTTTCATGC-CTTA---AT
*
215727 GGCATCCTTTCATGCATTTAGTTAT
1 -GCATCCTTTCATGC-CTTA---AT
215752 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
215773 G
1 G
215774 ATAACATATT
Statistics
Matches: 154, Mismatches: 12, Indels: 34
0.77 0.06 0.17
Matches are distributed among these distances:
20 59 0.38
21 10 0.06
22 6 0.04
24 11 0.07
25 44 0.29
26 24 0.16
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:215641 original size:66 final size:66
Alignment explanation
Indices: 215571--215773 Score: 309
Period size: 66 Copynumber: 3.0 Consensus size: 66
215561 TTTAGTTGTG
** *
215571 GCATCCTTTCATGCCTTAATGCATATTTTCATGCATTTTAGTTATGGCATCCTTTTATGCCTTAA
1 GCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAA
215636 T
66 T
*
215637 GCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGCCTTAA
1 GCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAA
215702 T
66 T
*
215703 GCATCCTTTCATGCATTTAGTTATGGCATCCTTTCATGCA-TTTAGTTATGGCATCCTTTCATGC
1 GCATCCTTTCATGC-CTTA---AT-GCATCCTTTCATGCATTTTAGTTATGGCATCCTTTCATGC
215767 CTTAAT
61 CTTAAT
215773 G
1 G
215774 ATAACATATT
Statistics
Matches: 126, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
66 76 0.60
67 3 0.02
70 32 0.25
71 15 0.12
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (66 bp):
GCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAA
T
Found at i:215665 original size:112 final size:114
Alignment explanation
Indices: 215502--215773 Score: 388
Period size: 112 Copynumber: 2.4 Consensus size: 114
215492 TGCCTTAATG
* * *
215502 ATCCTTTCATGCATTTAGTTATGGAATCCTTTCATGTCTTAATGCACCCTTTCATGCATTTTAGT
1 ATCCTTTCATGCACTTA--TATGGCATCCTTTCATGCCTTAATGCACCCTTTCATGCATTTTAGT
* * *
215567 TGTGGCATCCTTTCATGCCTTAATGCATATTTTCATGCATTTTAGTTATGGC
64 TATGACATCCTTTCATGCCTTAATGCATACTTTCATGCA-TTTAGTTATGGC
* *
215619 ATCCTTTTATGC-CTTA-AT-GCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
1 ATCCTTTCATGCACTTATATGGCATCCTTTCATGCCTTAATGCACCCTTTCATGCATTTTAGTTA
*
215681 TGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTAGTTATGGC
66 TGACATCCTTTCATGCCTTAATGCATACTTTCATGCATTTAGTTATGGC
*
215730 ATCCTTTCATGCATTTAGTTATGGCATCCTTTCATGCCTTAATG
1 ATCCTTTCATGCACTTA--TATGGCATCCTTTCATGCCTTAATG
215774 ATAACATATT
Statistics
Matches: 139, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
111 23 0.17
112 77 0.55
113 2 0.01
115 2 0.01
116 24 0.17
117 11 0.08
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (114 bp):
ATCCTTTCATGCACTTATATGGCATCCTTTCATGCCTTAATGCACCCTTTCATGCATTTTAGTTA
TGACATCCTTTCATGCCTTAATGCATACTTTCATGCATTTAGTTATGGC
Done.