Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009463.1 Hibiscus syriacus cultivar Beakdansim tig00113726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3931635
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 17 of 20
Found at i:3251574 original size:23 final size:23
Alignment explanation
Indices: 3251548--3251616 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
3251538 CACCACAGCT
*
3251548 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
** * **
3251571 CGTAGAGTTGCACCGTAGTGCTT
1 CGTAGAAATGCACCGAAGTGCCA
3251594 CGTAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
3251617 TATAAGGTTG
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:3252028 original size:2 final size:2
Alignment explanation
Indices: 3252021--3252057 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
3252011 TTCATCTTCC
3252021 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3252058 CATCTTTCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3253226 original size:24 final size:20
Alignment explanation
Indices: 3253173--3253230 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
3253163 TTTCCCTTGA
*
3253173 AGTGCATCGATACATTCTAC
1 AGTGCATCGATGCATTCTAC
3253193 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
3253216 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
3253231 CTACCCATGC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:3254571 original size:73 final size:74
Alignment explanation
Indices: 3254455--3254601 Score: 224
Period size: 73 Copynumber: 2.0 Consensus size: 74
3254445 CAAAAAATGT
** * * *
3254455 AGCACTTAACACATACTTACACCGGTGTAAGTGAATAAAATAAACAATTGTAGCACTTAACACAT
1 AGCACTTAACACATACTTACACAAGTGTAAGTAAATAAAATAAAAAAGTGTAGCACTTAACACAT
*
3254520 ATTTACACC
66 ACTTACACC
*
3254529 AGCACTTAACACATAC-TACACAAGTGTAAGTAAATAAAATAAAAAAGTGTAGTACTTAACACAT
1 AGCACTTAACACATACTTACACAAGTGTAAGTAAATAAAATAAAAAAGTGTAGCACTTAACACAT
3254593 ACTTACACC
66 ACTTACACC
3254602 GATGTAAACA
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
73 50 0.76
74 16 0.24
ACGTcount: A:0.45, C:0.20, G:0.10, T:0.24
Consensus pattern (74 bp):
AGCACTTAACACATACTTACACAAGTGTAAGTAAATAAAATAAAAAAGTGTAGCACTTAACACAT
ACTTACACC
Found at i:3255552 original size:16 final size:19
Alignment explanation
Indices: 3255531--3255575 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 19
3255521 AAGAAATTTA
3255531 TTTTTATATTAG-TA-T-T
1 TTTTTATATTAGTTATTAT
*
3255547 TTTTTA-AATAGTTATTAT
1 TTTTTATATTAGTTATTAT
3255565 TTTTTATATTA
1 TTTTTATATTA
3255576 ATATATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
15 4 0.17
16 8 0.35
17 1 0.04
18 7 0.30
19 3 0.13
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (19 bp):
TTTTTATATTAGTTATTAT
Found at i:3255572 original size:34 final size:34
Alignment explanation
Indices: 3255526--3255631 Score: 96
Period size: 34 Copynumber: 3.1 Consensus size: 34
3255516 GTGGTAAGAA
* *
3255526 ATTTATTTTTATATTAGTAT-TTT-TTTAAATAGTT
1 ATTT-TTTTTATATTAATATATTTATGTAAATA-TT
3255560 ATTATTTTTTATATTAATATATTTATGTAAATATT
1 ATT-TTTTTTATATTAATATATTTATGTAAATATT
* *
3255595 ATTTTTTATTA-A--AATAATATTTATATAATTATT
1 ATTTTTT-TTATATTAAT-ATATTTATGTAAATATT
3255628 ATTT
1 ATTT
3255632 ATTTAGAATT
Statistics
Matches: 63, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
32 3 0.05
33 19 0.30
34 22 0.35
35 12 0.19
36 7 0.11
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (34 bp):
ATTTTTTTTATATTAATATATTTATGTAAATATT
Found at i:3255600 original size:32 final size:33
Alignment explanation
Indices: 3255559--3255636 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
3255549 TTTAAATAGT
* *
3255559 TATTATTTTTTA-TATTAAT-ATATTTATGTAAA
1 TATTATTTTTTATTA-AAATAATATTTATATAAA
*
3255591 TATTATTTTTTATTAAAATAATATTTATATAAT
1 TATTATTTTTTATTAAAATAATATTTATATAAA
3255624 TATTATTTATTTA
1 TATTATTT-TTTA
3255637 GAATTATTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
32 15 0.38
33 21 0.52
34 4 0.10
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (33 bp):
TATTATTTTTTATTAAAATAATATTTATATAAA
Found at i:3257387 original size:21 final size:21
Alignment explanation
Indices: 3257357--3257404 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
3257347 GTAGGGGTAC
* *
3257357 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
3257378 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
3257399 ATGCCA
1 ATGCCA
3257405 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:3257434 original size:21 final size:21
Alignment explanation
Indices: 3257408--3257501 Score: 111
Period size: 21 Copynumber: 4.5 Consensus size: 21
3257398 TATGCCATCT
* *
3257408 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATGCCTAGC
*
3257429 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
*
3257450 CCTCCA-GGTTACATGCCTAGC
1 CC-GCAGGGTTACATGCCTAGC
*
3257471 CCGCCA-GGTTACATGCCCAGC
1 CCG-CAGGGTTACATGCCTAGC
3257492 CCGCAGGGTT
1 CCGCAGGGTT
3257502 TTATACCATA
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
20 2 0.03
21 61 0.94
22 2 0.03
ACGTcount: A:0.18, C:0.36, G:0.26, T:0.20
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:3257461 original size:42 final size:42
Alignment explanation
Indices: 3257354--3257493 Score: 108
Period size: 42 Copynumber: 3.3 Consensus size: 42
3257344 GCCGTAGGGG
* * * * *
3257354 TACATGCCCAGCCCTCCA-CTTCATATGCCAAGCCCACCAGTT
1 TACATGCCCAGCCCTCCAGGTT-ACATGCCGAGCCCGCCAGGT
* * * *
3257396 TATATG-CCATCTCC-GCAGGGTTACATTCCGAGCCCG-CAGGGT
1 TACATGCCCAGC-CCTCCA-GGTTACATGCCGAGCCCGCCA-GGT
* * *
3257438 TACATTCCTAGCCCTCCAGGTTACATGCCTAGCCCGCCAGGT
1 TACATGCCCAGCCCTCCAGGTTACATGCCGAGCCCGCCAGGT
3257480 TACATGCCCAGCCC
1 TACATGCCCAGCCC
3257494 GCAGGGTTTT
Statistics
Matches: 73, Mismatches: 18, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
41 8 0.11
42 56 0.77
43 9 0.12
ACGTcount: A:0.21, C:0.39, G:0.19, T:0.22
Consensus pattern (42 bp):
TACATGCCCAGCCCTCCAGGTTACATGCCGAGCCCGCCAGGT
Found at i:3258053 original size:28 final size:28
Alignment explanation
Indices: 3258021--3258117 Score: 77
Period size: 28 Copynumber: 3.2 Consensus size: 28
3258011 GATAAATGTT
*
3258021 TTTAAAATACAAATTATATTATTCGAAA
1 TTTAAAATAAAAATTATATTATTCGAAA
* *
3258049 TTTAAAATAAAAAAAATAATATTATTCAAATTTAAA
1 TTTAAAAT---AAAAATTATATTATTC-----GAAA
* *
3258085 TTTAAAATATAAATTATAGTATTCGAAA
1 TTTAAAATAAAAATTATATTATTCGAAA
3258113 TTTAA
1 TTTAA
3258118 CATTAAATTT
Statistics
Matches: 54, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
28 16 0.30
31 14 0.26
33 13 0.24
36 11 0.20
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (28 bp):
TTTAAAATAAAAATTATATTATTCGAAA
Found at i:3258937 original size:128 final size:128
Alignment explanation
Indices: 3258503--3258985 Score: 920
Period size: 127 Copynumber: 3.8 Consensus size: 128
3258493 TTTAAGTTAT
*
3258503 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGA--AAATAATGGAAG
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
3258566 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
66 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
*
3258629 TCCCCGAGGGACATGAATAACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
3258694 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGT-AAATAATAGGTACTGATATATCTAGTG
66 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
3258756 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
3258821 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
66 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
3258884 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
3258949 GCGCG-CCCCGGGAACGCGCCTTCATGTGAATAGTGAA
66 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
3258986 CCGATTATAG
Statistics
Matches: 351, Mismatches: 3, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
126 49 0.14
127 158 0.45
128 144 0.41
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (128 bp):
TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
Found at i:3258952 original size:255 final size:252
Alignment explanation
Indices: 3258503--3258982 Score: 915
Period size: 255 Copynumber: 1.9 Consensus size: 252
3258493 TTTAAGTTAT
*
3258503 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGAAAATAATGGAAGGC
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGAAAATAATGGAAGGC
3258568 GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTGTCCC
66 GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTGTCCC
3258633 CGAGGGACATGAATAACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAGGCGC
131 CGAGGGACATGAATAACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAGGCGC
3258698 GCCCCCGGGAACGCGCCTTCATGTGAATAGTAAATAATAGGTACTGATATATCTAGTG
196 G-CCCCGGGAACGCGCCTTCATGTGAATAGTAAATAATAGGTACTGATATATCTAGTG
3258756 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGA--AAATAATGGAAG
3258821 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTGTC
64 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTGTC
*
3258886 CCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAGGC
129 CCCGAGGGACATGAATAACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAGGC
3258951 GCGCCCCGGGAACGCGCCTTCATGTGAATAGT
194 GCGCCCCGGGAACGCGCCTTCATGTGAATAGT
3258983 GAACCGATTA
Statistics
Matches: 223, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
253 50 0.22
254 29 0.13
255 144 0.65
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (252 bp):
TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGAAAATAATGGAAGGC
GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTGTCCC
CGAGGGACATGAATAACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAGGCGC
GCCCCGGGAACGCGCCTTCATGTGAATAGTAAATAATAGGTACTGATATATCTAGTG
Found at i:3259064 original size:8 final size:8
Alignment explanation
Indices: 3259051--3259091 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
3259041 TCACAATCTT
3259051 TCAAATTC
1 TCAAATTC
3259059 TCAAATTC
1 TCAAATTC
* *
3259067 CCAAACTC
1 TCAAATTC
3259075 T-AAATTC
1 TCAAATTC
3259082 TCAAATTC
1 TCAAATTC
3259090 TC
1 TC
3259092 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:3262287 original size:13 final size:13
Alignment explanation
Indices: 3262269--3262294 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3262259 TACATAAATA
3262269 TATTTAATATATT
1 TATTTAATATATT
3262282 TATTTAATATATT
1 TATTTAATATATT
3262295 AATATATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTTAATATATT
Found at i:3265035 original size:21 final size:21
Alignment explanation
Indices: 3265005--3265045 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
3264995 AAATGTTAAA
*
3265005 AAATATTAATGTTTTAGGTAG
1 AAATAATAATGTTTTAGGTAG
3265026 AAATAATAATGTTTTAGGTA
1 AAATAATAATGTTTTAGGTA
3265046 ATTTTTTACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (21 bp):
AAATAATAATGTTTTAGGTAG
Found at i:3265844 original size:2 final size:2
Alignment explanation
Indices: 3265837--3265875 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
3265827 ACAAACTCTG
3265837 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3265876 ATTCAAAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:3269012 original size:2 final size:2
Alignment explanation
Indices: 3269007--3269133 Score: 149
Period size: 2 Copynumber: 65.5 Consensus size: 2
3268997 TGTTTGAAAT
3269007 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3269048 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A T- TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
3269087 TA -A TA AA TC TA -A TA AA TA AA TCA TA TT TCA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA T-A TA TA TA TA TA TA
3269129 TA TA T
1 TA TA T
3269134 TAAATTATAT
Statistics
Matches: 107, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
1 6 0.06
2 98 0.92
3 3 0.03
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:3269355 original size:2 final size:2
Alignment explanation
Indices: 3269348--3269430 Score: 65
Period size: 2 Copynumber: 45.5 Consensus size: 2
3269338 CTATAATTTA
3269348 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A- AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
3269387 TT AT TT AT -T AA AT TT AT -T TT A- AT A- AT -T AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3269424 AT AT AT A
1 AT AT AT A
3269431 CACGTGTGAG
Statistics
Matches: 64, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
1 8 0.12
2 56 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:3270374 original size:82 final size:85
Alignment explanation
Indices: 3270208--3270381 Score: 309
Period size: 82 Copynumber: 2.1 Consensus size: 85
3270198 TATTTTATAT
3270208 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
1 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATG--ATAGAT
3270273 AGCGCTTATATAATAAAATAGG
64 AGCGCTTATATAATAAAATAGG
3270295 TATTTAA-CGGAAATATTATCAAGTACAATAAC-TATTAGGTAACGCTTATATAATG-TAGATAG
1 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGATAGATAG
3270357 CGCTTATATAATAAAATAGG
66 CGCTTATATAATAAAATAGG
3270377 TATTT
1 TATTT
3270382 CATTATGGAC
Statistics
Matches: 87, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
82 32 0.37
85 23 0.26
86 25 0.29
87 7 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.34
Consensus pattern (85 bp):
TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGATAGATAG
CGCTTATATAATAAAATAGG
Found at i:3273616 original size:118 final size:118
Alignment explanation
Indices: 3273385--3273623 Score: 376
Period size: 118 Copynumber: 2.0 Consensus size: 118
3273375 ATTTTTTTCC
*
3273385 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTTGCT
1 ATTCTAGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTTGCT
3273450 AATAAAACCGTATACTTATACCGTTATATTACAAAATTATCTAGTACATTATA
66 AATAAAACCGTATACTTATACCGTTATATTACAAAATTATCTAGTACATTATA
*
3273503 ATTCTAGACATAAAGTACCGACACAA-ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCT-C
1 ATTCTAGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATT-TGC
* * * *
3273566 TCAT-AAACTGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATA
65 TAATAAAAC-CGTATACTTATACC-GTTATATTACAAAATTATCTAGTACATTATA
3273621 ATT
1 ATT
3273624 ATGGTTCCGA
Statistics
Matches: 112, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
116 4 0.04
117 49 0.44
118 59 0.53
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (118 bp):
ATTCTAGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTTGCT
AATAAAACCGTATACTTATACCGTTATATTACAAAATTATCTAGTACATTATA
Found at i:3273859 original size:180 final size:179
Alignment explanation
Indices: 3273503--3273988 Score: 816
Period size: 180 Copynumber: 2.7 Consensus size: 179
3273493 GTACATTATA
* *
3273503 ATTCTAGACATAAAGTACCGACACAA-ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCTCT
1 ATTCTGGACATAAAGTACCGACACAATATT-AAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
*
3273567 CATAAACTGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGTTCC
65 CATAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTAT-ATTATGGTTCC
3273632 GATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
129 GATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
3273683 ATTCTGGACATAAAGTACCGACACAATATTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTC
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTC
*
3273748 ATAAACCGGTATATTTTATACCGGTTATATTAC-AAA-TATCTATTACATTATATTCTGGGTTCC
66 ATAAACCGGTATA-TTTATACCGGTTATATTACAAAATTATCTATTACATTATATTAT-GGTTCC
3273811 GATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTTCTTCC
129 GATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACA-TTTTTCTTCC
* *
3273863 ATTCTGGACATAAAGTACCGACACAATATTAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTA
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTC
* *
3273928 ATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATAATTATGG
66 AT-AAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTAT-ATTATGG
3273989 ACATAAAGTA
Statistics
Matches: 289, Mismatches: 9, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
178 4 0.01
179 62 0.21
180 167 0.58
181 36 0.12
182 16 0.06
183 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (179 bp):
ATTCTGGACATAAAGTACCGACACAATATTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTC
ATAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATATTATGGTTCCGA
TGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
Found at i:3274019 original size:299 final size:296
Alignment explanation
Indices: 3273687--3274280 Score: 984
Period size: 299 Copynumber: 2.0 Consensus size: 296
3273677 TCTTCCATTC
*
3273687 TGGACATAAAGTACCGACACAATATTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCAT-A
1 TGGACATAAAGTACCGACACAATATTAAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATAA
3273751 AACCGGTATATTTTATACCGGTTATATTAC-AAA-TATCTATTACATTAT-ATTCTGGGTTCCGA
66 AACCGGTATA-TTTAT-CCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGA
* *
3273813 TGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTTCTTCCATTCTGGACATAAAG
129 TGTGTAAATGTCGACACTTTTTGACAAGGTATCAACACA--TTTTCTTCCATTATGGACATAAAG
* *
3273878 TACCGACACAATATT-AAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATA
192 TACCAAC-CAATATTAAAAAATGTCGACATAGGTTGTAGACCTATTCGCTAAT-AAACCGGTATA
3273942 CTTATACCGGTTATATTACAAAATTATCTAGTACATTATAATTA
255 CTTATACC-GTTATATTAC-AAATTATCTAGTACATTATAATTA
3273986 TGGACATAAAGTACCGACACAA-ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATA
1 TGGACATAAAGTACCGACACAATATT-AAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATA
3274050 AAACCGGTATATTTATCCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
65 AAACCGGTATATTTATCCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
3274115 GTGTAAATGTCGACACTTTTTGACAAGGTATCAACACATTTTCTTCCATTATGGACATAAAGTAC
130 GTGTAAATGTCGACACTTTTTGACAAGGTATCAACACATTTTCTTCCATTATGGACATAAAGTAC
* * *
3274180 CAACCAATATTAAAAAATGTCGATATAGGTTGTAGACCTATTCGCTCATAAACCGGTATATTTAT
195 CAACCAATATTAAAAAATGTCGACATAGGTTGTAGACCTATTCGCTAATAAACCGGTATACTTAT
*
3274245 ACCGTTATATTACAAATTATCTATTACATTATAATT
260 ACCGTTATATTACAAATTATCTAGTACATTATAATT
3274281 CTTGTTCCGA
Statistics
Matches: 280, Mismatches: 9, Indels: 15
0.92 0.03 0.05
Matches are distributed among these distances:
296 22 0.08
297 10 0.04
298 41 0.15
299 129 0.46
300 26 0.09
301 52 0.19
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (296 bp):
TGGACATAAAGTACCGACACAATATTAAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATAA
AACCGGTATATTTATCCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATG
TGTAAATGTCGACACTTTTTGACAAGGTATCAACACATTTTCTTCCATTATGGACATAAAGTACC
AACCAATATTAAAAAATGTCGACATAGGTTGTAGACCTATTCGCTAATAAACCGGTATACTTATA
CCGTTATATTACAAATTATCTAGTACATTATAATTA
Found at i:3274159 original size:479 final size:480
Alignment explanation
Indices: 3273226--3274464 Score: 2129
Period size: 479 Copynumber: 2.6 Consensus size: 480
3273216 TTAAAATTAG
3273226 CGACAC-ATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTT
1 CGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCAT-AAACCGGTATATTT
*
3273290 ATACCTGTTATATTACAAATTATCTATTACATTATAATTATGGGTTCCGA--TGT-AATGTCGAC
65 ATACC-GTTATATTACAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGAC
3273352 ACTTTTTGACAAGGTATCGACACA-TTTTT-TTCCATTCTGGACATAAAGTACCGACACAATATT
129 ACTTTTTGACAAGGTATCGACACATTTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATT
3273415 AAAAAGTGTCGACATAGGTTGTAGACCTATTTGCTAATAAAACCGTATACTTATACC-GTTATAT
194 AAAAAGTGTCGACATAGGTTGTAGACCTATTTGCTAATAAAACCGTATACTTATACCGGTTATAT
* *
3273479 TACAAAATTATCTAGTACATTATAATTCTAGACATAAAGTACCGACACAAATTAAAAAGTGTCGA
259 TACAAAATTATCTAGTACATTATAATTATGGACATAAAGTACCGACACAAATTAAAAAGTGTCGA
* *
3273544 TATAGGTTGTAGACCTATTCTCTCATAAACTGGTATATTTATACCGGTTATATTACAAAATTATC
324 TATAGGTTGTAGACCTATTCACTCATAAACCGGTATATTTATACCGGTTATATTACAAAATTATC
*
3273609 TATTACATTATAATTATGGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACAT
389 TATTACATTATAATTATGGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCAACACAT
*
3273674 TTTTCTTCCATTCTGGACATAAAGTAC
454 TTTTCTTCCATTATGGACATAAAGTAC
3273701 CGACACAATATT-AAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAACCGGTATATTTT
1 CGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAACCGGTATA-TTT
3273765 ATACCGGTTATATTACAAA-TATCTATTACATTAT-ATTCTGGGTTCCGATGTGTAAATGTCGAC
65 ATACC-GTTATATTACAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGAC
3273828 ACTTTTTGACAAGGTATCGACACATTTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATT
129 ACTTTTTGACAAGGTATCGACACATTTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATT
*
3273893 -AAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATA
194 AAAAAGTGTCGACATAGGTTGTAGACCTATTTGCTAATAAAACC-GTATACTTATACCGGTTATA
3273957 TTACAAAATTATCTAGTACATTATAATTATGGACATAAAGTACCGACACAAATTAAAAAGTGTCG
258 TTACAAAATTATCTAGTACATTATAATTATGGACATAAAGTACCGACACAAATTAAAAAGTGTCG
3274022 ATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATTTAT-CCGGTTATATTACAAAATTA
323 ATATAGGTTGTAGACCTATTCACTCAT-AAACCGGTATATTTATACCGGTTATATTACAAAATTA
*
3274086 TCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCAACA
387 TCTATTACATTATAATTAT-GGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCAACA
3274151 CA-TTTTCTTCCATTATGGACATAAAGTAC
451 CATTTTTCTTCCATTATGGACATAAAGTAC
* *
3274180 CAAC-CAATATTAAAAAATGTCGATATAGGTTGTAGACCTATTCGCTCATAAACCGGTATATTTA
1 CGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAACCGGTATATTTA
*
3274244 TACCGTTATATTACAAATTATCTATTACATTATAATTCT-TGTTCCGATGTGTAAATGTCGACAC
66 TACCGTTATATTACAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACAC
3274308 TTTTTTGACAAGGTATCGACACATTTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTA
131 -TTTTTGACAAGGTATCGACACATTTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTA
* *
3274373 AAAAGTGTCGATATAGGTTGTAGACCTATTTGC-ACAT-AAACCGTATATTTATACCGGTTATAT
195 AAAAGTGTCGACATAGGTTGTAGACCTATTTGCTA-ATAAAACCGTATACTTATACCGGTTATAT
*
3274436 TACAAAATTATCTATTAC-TTAT-ATTATGG
259 TACAAAATTATCTAGTACATTATAATTATGG
3274465 TTCCGATGCT
Statistics
Matches: 730, Mismatches: 17, Indels: 33
0.94 0.02 0.04
Matches are distributed among these distances:
473 13 0.02
474 26 0.04
475 67 0.09
476 45 0.06
477 64 0.09
478 138 0.19
479 283 0.39
480 94 0.13
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (480 bp):
CGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAACCGGTATATTTA
TACCGTTATATTACAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACAC
TTTTTGACAAGGTATCGACACATTTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAA
AAAGTGTCGACATAGGTTGTAGACCTATTTGCTAATAAAACCGTATACTTATACCGGTTATATTA
CAAAATTATCTAGTACATTATAATTATGGACATAAAGTACCGACACAAATTAAAAAGTGTCGATA
TAGGTTGTAGACCTATTCACTCATAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTA
TTACATTATAATTATGGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCAACACATTT
TTCTTCCATTATGGACATAAAGTAC
Found at i:3274435 original size:181 final size:181
Alignment explanation
Indices: 3273986--3274552 Score: 879
Period size: 180 Copynumber: 3.2 Consensus size: 181
3273976 ATTATAATTA
*
3273986 TGGACATAAAGTACCGACACAA-ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATA
1 TGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCAT-
3274050 AAACCGGTATATTTAT-CCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGA
65 AAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCT-GGTTCCGA
* *
3274114 TGTGTAAATGTCGACACTTTTTGACAAGGTATCAACACA-TTTTCTTCCATTA
129 TGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTC
* *
3274166 TGGACATAAAGTACCAAC-CAATATTAAAAAATGTCGATATAGGTTGTAGACCTATTCGCTCATA
1 TGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATA
*
3274230 AACCGGTATATTTATACC-GTTATATTAC-AAATTATCTATTACATTATAATTCTTGTTCCGATG
66 AACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGTTCCGATG
3274293 TGTAAATGTCGACACTTTTTTGACAAGGTATCGACACATTTTTTCTTCCATTC
131 TGTAAATGTCGACAC-TTTTTGACAAGGTATCGACACA-TTTTTCTTCCATTC
* *
3274346 TGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTTGCACATA
1 TGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATA
*
3274411 AACC-GTATATTTATACCGGTTATATTACAAAATTATCTATTAC-TTAT-ATTATGGTTCCGATG
66 AACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGTTCCGATG
* * * *
3274473 CTTTTCAA--TCGACACTTTTTGAAAACGTATCGACACATTTTTCTTCCATTC
131 --TGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTC
3274524 TGGACATAAAGTACCGACAC-ATATTAAAA
1 TGGACATAAAGTACCGACACAATATTAAAA
3274553 GTATGAAAAC
Statistics
Matches: 361, Mismatches: 16, Indels: 23
0.90 0.04 0.06
Matches are distributed among these distances:
177 33 0.09
178 80 0.22
179 49 0.14
180 120 0.33
181 61 0.17
182 18 0.05
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (181 bp):
TGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATA
AACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGTTCCGATG
TGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTC
Found at i:3275764 original size:12 final size:12
Alignment explanation
Indices: 3275735--3275786 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
3275725 GTTTGGATCA
* *
3275735 TCATCATCATCA
1 TCATCTTCATCG
3275747 TCATCTTCATCG
1 TCATCTTCATCG
*
3275759 TCATCTTTATCG
1 TCATCTTCATCG
* *
3275771 TCAGCTTCATCT
1 TCATCTTCATCG
3275783 TCAT
1 TCAT
3275787 TGACCGCTTG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.21, C:0.31, G:0.06, T:0.42
Consensus pattern (12 bp):
TCATCTTCATCG
Found at i:3275786 original size:6 final size:6
Alignment explanation
Indices: 3275735--3275786 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
3275725 GTTTGGATCA
* * * * * *
3275735 TCATCA TCATCA TCATCT TCATCG TCATCT TTATCG TCAGCT TCATCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
3275783 TCAT
1 TCAT
3275787 TGACCGCTTG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.21, C:0.31, G:0.06, T:0.42
Consensus pattern (6 bp):
TCATCT
Found at i:3277465 original size:198 final size:195
Alignment explanation
Indices: 3277010--3277733 Score: 1167
Period size: 198 Copynumber: 3.7 Consensus size: 195
3277000 AACATTAAAC
* *
3277010 AGTGTCGATACA-TATTATA-ACCAATTCTCCCATAAACCGGTATACTTATACCAGTTAGATTG-
1 AGTGTCGATACATTATT-TAGACCTATTCTCTCATAAACCGGTATACTTATACC-GTTAGATTGA
* *
3277072 AAAATTACCTAATACATTATACTTTTGGGTTTCGATG-TTATGGATCGACACTTTTTATATATGG
64 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGATCGACACTTTTTATATATGG
3277136 ATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATCGACACAAACTACA
129 ATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATCGACACAAACTACA
3277201 AA
194 AA
* * *
3277203 AGTGTCGACACATTA-TTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG-
1 AGTGTCGATACATTATTTAGACCTATTCTCTCAT-AAACCGGTATACTTATACC-GTTAGATTGA
*
3277266 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGTCGACACTTTTTATATATGG
64 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGATCGACACTTTTTATATATGG
3277331 ATCGACACTTTATTGTTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACAC-AACT
129 ATCGACACTTTATTG-TTGCACCCTGTTTGCCATTCATTCTGGACC-AAAA-ATCGACACAAACT
3277395 ACAAA
191 ACAAA
*
3277400 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTATACCTGTTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCAT-AAACCGGTATACTTATACC-GTTAGATTGA
3277465 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATCGGATCGACACTTTTTATATATG
64 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTAT-GGATCGACACTTTTTATATATG
*
3277530 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTTGACCAAAAATCGACACAAACTAC
128 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATCGACACAAACTAC
3277595 AAA
193 AAA
* *
3277598 AGTGTCAATACATTATTTAGACCTATTCTCTCATAAACCGGTATACTTGTACCGATTAGATTGAA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAACCGGTATACTTATACCG-TTAGATTGAA
*
3277663 AAATTACCTATTA-ATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGG
65 AAATTACCTATTACATTATACTTATGGGTTTCGATGTTTAT-GGATCGACACTTTTTATATATGG
3277727 ATCGACA
129 ATCGACA
3277734 ATTATGATAA
Statistics
Matches: 498, Mismatches: 21, Indels: 21
0.92 0.04 0.04
Matches are distributed among these distances:
192 2 0.00
193 23 0.05
194 64 0.13
195 41 0.08
196 87 0.17
197 75 0.15
198 98 0.20
199 71 0.14
200 37 0.07
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (195 bp):
AGTGTCGATACATTATTTAGACCTATTCTCTCATAAACCGGTATACTTATACCGTTAGATTGAAA
AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGATCGACACTTTTTATATATGGAT
CGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATCGACACAAACTACAAA
Found at i:3277545 original size:395 final size:391
Alignment explanation
Indices: 3277010--3277733 Score: 1240
Period size: 395 Copynumber: 1.8 Consensus size: 391
3277000 AACATTAAAC
3277010 AGTGTCGATACATATTATAACCAATTCTCCCATAAACCGGTATACTTATACCAGTTAGATTGAAA
1 AGTGTCGATACATATTATAACCAATTCTCCCATAAACCGGTATACTTATACCAGTTAGATTGAAA
*
3277075 ATTACCTAATACATTATACTTTTGGGTTTCGATGTTATGGATCGACACTTTTTATATATGGATCG
66 ATTACCTAATACATTATACTTATGGGTTTCGATGTTATGGATCGACACTTTTTATATATGGATCG
3277140 ACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATCGACACAAACTACAAAAG
131 ACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATCGACACAAACTACAAAAG
* *
3277205 TGTCGACACATTA-TTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG-AA
196 TGTCAACACATTATTTAGACATATTCTCTCAT-AAACCGGTATACTTGTACCGATTAGATTGAAA
3277268 AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGG-TCGACACTTTTTATATATGGA
260 AATTACCTATTA-ATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
3277332 TCGACACTTTATTGTTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAACTAC
324 TCGACACTTTATTGTTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAACTAC
3277397 AAA
389 AAA
* * * *
3277400 AGTGTCGATACATTATT-TAGACCTATTCTCTCATAAAACTGGTATACTTATACCTGTTAGATTG
1 AGTGTCGATACA-TATTATA-ACCAATTCTCCCAT-AAACCGGTATACTTATACCAGTTAGATTG
*
3277464 AAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATCGGATCGACACTTTTTATATAT
63 -AAAATTACCTAATACATTATACTTATGGGTTTCGATG-TTAT-GGATCGACACTTTTTATATAT
*
3277529 GGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTTGACCAAAAATCGACACAAACTA
125 GGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATCGACACAAACTA
* *
3277594 CAAAAGTGTCAATACATTATTTAGACCTATTCTCTCATAAACCGGTATACTTGTACCGATTAGAT
190 CAAAAGTGTCAACACATTATTTAGACATATTCTCTCATAAACCGGTATACTTGTACCGATTAGAT
*
3277659 TGAAAAATTACCTATTAATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATA
255 TGAAAAATTACCTATTAATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATA
3277724 TGGATCGACA
320 TGGATCGACA
3277734 ATTATGATAA
Statistics
Matches: 313, Mismatches: 12, Indels: 12
0.93 0.04 0.04
Matches are distributed among these distances:
390 14 0.04
391 16 0.05
392 27 0.09
393 35 0.11
394 4 0.01
395 159 0.51
396 58 0.19
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (391 bp):
AGTGTCGATACATATTATAACCAATTCTCCCATAAACCGGTATACTTATACCAGTTAGATTGAAA
ATTACCTAATACATTATACTTATGGGTTTCGATGTTATGGATCGACACTTTTTATATATGGATCG
ACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATCGACACAAACTACAAAAG
TGTCAACACATTATTTAGACATATTCTCTCATAAACCGGTATACTTGTACCGATTAGATTGAAAA
ATTACCTATTAATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATC
GACACTTTATTGTTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAACTACAA
A
Found at i:3277879 original size:18 final size:18
Alignment explanation
Indices: 3277856--3277916 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
3277846 TCTCATTCAT
*
3277856 AATTATATTCACATACAA
1 AATTATAATCACATACAA
**
3277874 AATTATAAATCGTATACAA
1 AATTAT-AATCACATACAA
**
3277893 AATTATAAATCTTATACAA
1 AATTAT-AATCACATACAA
3277912 AATTA
1 AATTA
3277917 ACCCTATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
18 6 0.16
19 32 0.84
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (18 bp):
AATTATAATCACATACAA
Found at i:3277892 original size:19 final size:19
Alignment explanation
Indices: 3277868--3277916 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
3277858 TTATATTCAC
3277868 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
3277887 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
3277906 ATACAAAATTA
1 ATACAAAATTA
3277917 ACCCTATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:3279801 original size:20 final size:21
Alignment explanation
Indices: 3279764--3279806 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
3279754 CCCCTTATGC
3279764 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
*
3279785 CTCTCAAGT-TCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
3279805 CT
1 CT
3279807 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.16, C:0.33, G:0.12, T:0.40
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:3279906 original size:14 final size:14
Alignment explanation
Indices: 3279887--3279917 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
3279877 ACTATGTTTT
*
3279887 CCCTCACCGTCGTC
1 CCCTCACCGTCATC
3279901 CCCTCACCGTCATC
1 CCCTCACCGTCATC
3279915 CCC
1 CCC
3279918 AATACAACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.61, G:0.10, T:0.19
Consensus pattern (14 bp):
CCCTCACCGTCATC
Found at i:3282060 original size:20 final size:19
Alignment explanation
Indices: 3282005--3282051 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
3281995 TCCGGTATCG
3282005 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
3282024 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
3282045 TTTTACC
1 TTTTACC
3282052 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:3282228 original size:20 final size:19
Alignment explanation
Indices: 3282182--3282228 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
3282172 TCCGGTAACG
3282182 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
3282201 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
3282222 TTTTACC
1 TTTTACC
3282229 TGGTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:3283185 original size:46 final size:44
Alignment explanation
Indices: 3283133--3283239 Score: 146
Period size: 45 Copynumber: 2.4 Consensus size: 44
3283123 TGCACATACT
3283133 ATGCATCGATGCACTCA-G-AGTTTTATGAAAACATCGAATGCATTTG
1 ATGCATCGATGCACTCATGCA-TTTT-T--AAACATCGAATGCATTTG
*
3283179 ATGCATCGATGCACTCATGCTATTTTTAAACATCGAATGCATTTT
1 ATGCATCGATGCACTCATGC-ATTTTTAAACATCGAATGCATTTG
3283224 ATGCATCGATGCACTC
1 ATGCATCGATGCACTC
3283240 TTAGTGCACC
Statistics
Matches: 57, Mismatches: 1, Indels: 7
0.88 0.02 0.11
Matches are distributed among these distances:
45 33 0.58
46 17 0.30
47 2 0.04
48 4 0.07
49 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33
Consensus pattern (44 bp):
ATGCATCGATGCACTCATGCATTTTTAAACATCGAATGCATTTG
Found at i:3288957 original size:20 final size:21
Alignment explanation
Indices: 3288932--3289028 Score: 72
Period size: 21 Copynumber: 4.4 Consensus size: 21
3288922 TTGTGCTTCA
3288932 TGCATCGATACAC-TT-AATAG
1 TGCATCGATACACTTTGAAT-G
3288952 TGCATCGATGCATCACTTTGAATG
1 TGCATCGAT--A-CACTTTGAATG
** *
3288976 TGCATCGATACACCATGAAGG
1 TGCATCGATACACTTTGAATG
* * *
3288997 TGCACCGATGCATGCCTTGAATG
1 TGCATCGATACA--CTTTGAATG
3289020 TGCATCGAT
1 TGCATCGAT
3289029 GTACACTGCC
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
20 9 0.15
21 18 0.29
22 2 0.03
23 18 0.29
24 12 0.19
25 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (21 bp):
TGCATCGATACACTTTGAATG
Found at i:3290319 original size:22 final size:22
Alignment explanation
Indices: 3290291--3290354 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
3290281 GACCGTTAGA
*
3290291 CAGGGGGAATCGGTACCCCCTG
1 CAGGGGGAATCTGTACCCCCTG
* *
3290313 CAGGGGGAATCTATACCCCTTG
1 CAGGGGGAATCTGTACCCCCTG
3290335 --GGGGGAATCTGTACCCCCTG
1 CAGGGGGAATCTGTACCCCCTG
3290355 GACAATCTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 18 0.49
22 19 0.51
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (22 bp):
CAGGGGGAATCTGTACCCCCTG
Found at i:3290719 original size:27 final size:27
Alignment explanation
Indices: 3290681--3290744 Score: 128
Period size: 27 Copynumber: 2.4 Consensus size: 27
3290671 TTTGAAATTA
3290681 CTCCCCCTTTAAAACACCTTAACACTT
1 CTCCCCCTTTAAAACACCTTAACACTT
3290708 CTCCCCCTTTAAAACACCTTAACACTT
1 CTCCCCCTTTAAAACACCTTAACACTT
3290735 CTCCCCCTTT
1 CTCCCCCTTT
3290745 TTGTTAAATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.25, C:0.44, G:0.00, T:0.31
Consensus pattern (27 bp):
CTCCCCCTTTAAAACACCTTAACACTT
Found at i:3292329 original size:3 final size:3
Alignment explanation
Indices: 3292321--3292358 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
3292311 TACGTCCTCA
* *
3292321 TTC TTC TTC TTC TTC TTC TTC TTG TTT TTC TTC -TC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
3292359 CCTTTCTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.00, C:0.29, G:0.03, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:3293789 original size:22 final size:21
Alignment explanation
Indices: 3293763--3293843 Score: 87
Period size: 21 Copynumber: 3.9 Consensus size: 21
3293753 ACCGTTAGAC
3293763 AGGGGGAATCGGTACCCCCTA
1 AGGGGGAATCGGTACCCCCTA
3293784 CAGGGGGAATCGGTA-CCCCT-
1 -AGGGGGAATCGGTACCCCCTA
*
3293804 -GGAGGGAATCTGTACCCCCTA
1 AGG-GGGAATCGGTACCCCCTA
* **
3293825 GGGGGGAATCTCTACCCCC
1 AGGGGGAATCGGTACCCCC
3293844 CGGACAATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
18 2 0.04
19 10 0.19
20 5 0.09
21 20 0.38
22 16 0.30
ACGTcount: A:0.21, C:0.31, G:0.32, T:0.16
Consensus pattern (21 bp):
AGGGGGAATCGGTACCCCCTA
Found at i:3293812 original size:19 final size:19
Alignment explanation
Indices: 3293763--3293834 Score: 74
Period size: 22 Copynumber: 3.5 Consensus size: 19
3293753 ACCGTTAGAC
3293763 AGGGGGAATCGGTACCCCCT
1 AGGGGGAATCGGTA-CCCCT
3293783 ACAGGGGGAATCGGTACCCCT
1 --AGGGGGAATCGGTACCCCT
*
3293804 -GGAGGGAATCTGTACCCCCT
1 AGG-GGGAATCGGTA-CCCCT
3293824 AGGGGGGAATC
1 A-GGGGGAATC
3293835 TCTACCCCCC
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
18 2 0.04
19 10 0.22
20 5 0.11
21 12 0.27
22 16 0.36
ACGTcount: A:0.22, C:0.26, G:0.36, T:0.15
Consensus pattern (19 bp):
AGGGGGAATCGGTACCCCT
Found at i:3296209 original size:65 final size:63
Alignment explanation
Indices: 3296092--3296299 Score: 217
Period size: 65 Copynumber: 3.2 Consensus size: 63
3296082 TTTCAAAGTG
* * * **
3296092 ATGCACCGATGCACCAATCCATGCATTGATGCAC-CATGGAATAAATTG-AACATCGAATGCATT
1 ATGCATCGATGCA-CAA-CCATGCATCGATGCACTCA-GG-CTATTTTGAAACATCGAATGCATT
3296155 TC
62 TC
*
3296157 ATGCATCGATGCACATACTATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCGAATGCATT
1 ATGCATCGATGCACA-ACCATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGAATGCATT
*
3296220 TG
62 TC
* * *
3296222 ACGCATCGATGCACCAGCCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTT
1 ATGCATCGATGCA-CAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTC
3296286 ATGCATCGATGCAC
1 ATGCATCGATGCAC
3296300 TCTTAGTGCA
Statistics
Matches: 123, Mismatches: 11, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
62 1 0.01
63 4 0.03
64 47 0.38
65 66 0.54
66 5 0.04
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (63 bp):
ATGCATCGATGCACAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTC
Found at i:3299371 original size:59 final size:59
Alignment explanation
Indices: 3299282--3299396 Score: 221
Period size: 59 Copynumber: 1.9 Consensus size: 59
3299272 TGGAAGTGAA
*
3299282 TTGAGTTGATACTATTAACATTCTGTGAGGATACCTAGGACTTGTATGAATTCTACGAG
1 TTGAGTTGATACTATTAACATTCTGTGAGGATACCCAGGACTTGTATGAATTCTACGAG
3299341 TTGAGTTGATACTATTAACATTCTGTGAGGATACCCAGGACTTGTATGAATTCTAC
1 TTGAGTTGATACTATTAACATTCTGTGAGGATACCCAGGACTTGTATGAATTCTAC
3299397 TATGTTTTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.36
Consensus pattern (59 bp):
TTGAGTTGATACTATTAACATTCTGTGAGGATACCCAGGACTTGTATGAATTCTACGAG
Found at i:3310999 original size:42 final size:42
Alignment explanation
Indices: 3310952--3311069 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
3310942 GATGCACCTA
* *
3310952 TCATCATTCAAG-AGGCGCCTCCTATCGTTCAAGAGGCCCATC
1 TCATCATTCAAGAAGGC-CCTCCCACCGTTCAAGAGGCCCATC
* * *
3310994 TCATCA-TCGAAGAAGTCCCTCCCACCGTTCAAGAGGCCCCTG
1 TCATCATTC-AAGAAGGCCCTCCCACCGTTCAAGAGGCCCATC
* * * *
3311036 TCATCGTTCAAG-TGGTCCCACCCGCCGTTCAAGA
1 TCATCATTCAAGAAGG-CCCTCCCACCGTTCAAGA
3311070 TCTCGATTCA
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
41 3 0.05
42 54 0.87
43 5 0.08
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.22
Consensus pattern (42 bp):
TCATCATTCAAGAAGGCCCTCCCACCGTTCAAGAGGCCCATC
Found at i:3311034 original size:21 final size:21
Alignment explanation
Indices: 3310953--3311047 Score: 75
Period size: 21 Copynumber: 4.5 Consensus size: 21
3310943 ATGCACCTAT
* *
3310953 CATCATTCAAGAGGCGCCTCC
1 CATCGTTCAAGAGGCCCCTCC
* * *
3310974 TATCGTTCAAGAGGCCCATCT
1 CATCGTTCAAGAGGCCCCTCC
* * *
3310995 CATC-ATCGAAGAAGTCCCTCC
1 CATCGTTC-AAGAGGCCCCTCC
* **
3311016 CACCGTTCAAGAGGCCCCTGT
1 CATCGTTCAAGAGGCCCCTCC
3311037 CATCGTTCAAG
1 CATCGTTCAAG
3311048 TGGTCCCACC
Statistics
Matches: 54, Mismatches: 18, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
20 2 0.04
21 50 0.93
22 2 0.04
ACGTcount: A:0.24, C:0.35, G:0.19, T:0.22
Consensus pattern (21 bp):
CATCGTTCAAGAGGCCCCTCC
Found at i:3312494 original size:14 final size:14
Alignment explanation
Indices: 3312475--3312514 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
3312465 TTTTGATTAA
3312475 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
** *
3312489 TTGATTTGTTTAAT
1 TTGATTTGTAAAAG
3312503 TTGATTTGTAAA
1 TTGATTTGTAAA
3312515 TAAGAATTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:3312497 original size:61 final size:64
Alignment explanation
Indices: 3312424--3312565 Score: 175
Period size: 66 Copynumber: 2.2 Consensus size: 64
3312414 TTTTACATTG
3312424 AAAGTTGATTTGTTACAATTGATGAGGAAATAAG-A-T-TTATTTT-TTGATTAATTGATTTGTA
1 AAAGTTGATTTGTTA-AATTGATGAGGAAATAAGAATTATTATTTTCTTGATTAATTGATTTGTA
* ** * * *
3312485 AAAGTTGATTTGTTTAATTTGATTTGTAAATAAGAATTATTTTTTTGCTTGTTTAATTGATTTGT
1 AAAGTTGATTTG-TTAAATTGATGAGGAAATAAGAATTATTATTTT-CTTGATTAATTGATTTGT
3312550 A
64 A
3312551 AAAGTTGATTTGTTA
1 AAAGTTGATTTGTTA
3312566 TTTCTAAAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
61 26 0.38
62 4 0.06
63 1 0.01
64 6 0.09
65 3 0.04
66 29 0.42
ACGTcount: A:0.32, C:0.01, G:0.17, T:0.50
Consensus pattern (64 bp):
AAAGTTGATTTGTTAAATTGATGAGGAAATAAGAATTATTATTTTCTTGATTAATTGATTTGTA
Found at i:3312889 original size:39 final size:39
Alignment explanation
Indices: 3312835--3312959 Score: 241
Period size: 39 Copynumber: 3.2 Consensus size: 39
3312825 CAAGTTGTAA
*
3312835 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
3312874 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
3312913 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
3312952 ATTTTGAT
1 ATTTTGAT
3312960 GAGCATCGGA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.17, C:0.16, G:0.20, T:0.47
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
Found at i:3313288 original size:18 final size:18
Alignment explanation
Indices: 3313265--3313301 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
3313255 AGAAATTTAT
3313265 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
3313283 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
3313301 A
1 A
3313302 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:3313721 original size:25 final size:25
Alignment explanation
Indices: 3313687--3313736 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
3313677 ATTATTTTTC
3313687 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCATAACAATGTT
3313712 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCATAACAATGTT
3313737 TAATTGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (25 bp):
CAAATAATGTACCCATAACAATGTT
Found at i:3316458 original size:24 final size:24
Alignment explanation
Indices: 3316424--3316477 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
3316414 CCATCACATC
3316424 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
3316448 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
3316472 ATCAAA
1 ATCAAA
3316478 TTTCAAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:3317406 original size:20 final size:20
Alignment explanation
Indices: 3317370--3317499 Score: 106
Period size: 20 Copynumber: 6.6 Consensus size: 20
3317360 ACTAAAACAT
*
3317370 GTTGCGAAATT-AAATTCGC
1 GTTGCGAATTTGAAATTCGC
*
3317389 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCGC
**
3317408 GTTGCGAATTTGACTTTCGC
1 GTTGCGAATTTGAAATTCGC
* * *
3317428 GTTGCGAAATTGGAAACT-GG
1 GTTGCG-AATTTGAAATTCGC
* * *
3317448 GTTGCGAAATTGAAA-ACTGG
1 GTTGCGAATTTGAAATTC-GC
* *
3317468 GTTGCGAAATTGGAATTCGC
1 GTTGCGAATTTGAAATTCGC
3317488 GTTGCGAATTTG
1 GTTGCGAATTTG
3317500 TTGGTCATTT
Statistics
Matches: 88, Mismatches: 17, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
19 33 0.38
20 47 0.53
21 8 0.09
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (20 bp):
GTTGCGAATTTGAAATTCGC
Found at i:3317803 original size:17 final size:15
Alignment explanation
Indices: 3317781--3317814 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
3317771 TCATCATTAG
3317781 CAAAACTATATAAGCTC
1 CAAAACTAT-TAA-CTC
3317798 CAAAACTATTAACTC
1 CAAAACTATTAACTC
3317813 CA
1 CA
3317815 TTAAATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 3 0.18
17 9 0.53
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.24
Consensus pattern (15 bp):
CAAAACTATTAACTC
Found at i:3323334 original size:19 final size:19
Alignment explanation
Indices: 3323310--3323348 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
3323300 CTTGCAGATG
3323310 TGTTGGTGT-ATTGTAGTAT
1 TGTTGG-GTCATTGTAGTAT
*
3323329 TGTTGGGTCATTGTTGTAT
1 TGTTGGGTCATTGTAGTAT
3323348 T
1 T
3323349 TGAGCCACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.13, C:0.03, G:0.31, T:0.54
Consensus pattern (19 bp):
TGTTGGGTCATTGTAGTAT
Found at i:3325229 original size:33 final size:36
Alignment explanation
Indices: 3325155--3325229 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 36
3325145 TTTTAAAATA
3325155 ATTATTTTATAATTGTAATATTTTCATAATGATTTT
1 ATTATTTTATAATTGTAATATTTTCATAATGATTTT
* *
3325191 A-TATTTTAT-ATT-TCATATTTT-A-AATTGTTTTT
1 ATTATTTTATAATTGTAATATTTTCATAA-TGATTTT
3325223 ATTATTT
1 ATTATTT
3325230 GTTGCATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
31 2 0.06
32 8 0.23
33 13 0.37
34 3 0.09
35 8 0.23
36 1 0.03
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.63
Consensus pattern (36 bp):
ATTATTTTATAATTGTAATATTTTCATAATGATTTT
Found at i:3326268 original size:80 final size:83
Alignment explanation
Indices: 3326135--3326330 Score: 265
Period size: 80 Copynumber: 2.4 Consensus size: 83
3326125 ATATAAATGT
* * * *
3326135 GTAATATTTTACCTCGTATTGTTTTGTTAAATGATATTGTTGAGTTTATTTACA-A-A-TATTTT
1 GTAATATTTTACCTCGTATTGTTATGTTAAATGATATTATTAAGTTTAATTACATATAGTATTTT
* *
3326197 -TTAAATGATATTGTAAA
66 GTTAAATGACATCGTAAA
*
3326214 GTAATATTTTTACCTCGTATTGTTATGTTAAATGATATTATTAAGTTTAATTACATATAGTTTTT
1 GTAATA-TTTTACCTCGTATTGTTATGTTAAATGATATTATTAAGTTTAATTACATATAGTATTT
**
3326279 TGTTAAATGACATCGTTGA
65 TGTTAAATGACATCGTAAA
*
3326298 GTGATATTTTACCTCGTATTGTTATGTTAAATG
1 GTAATATTTTACCTCGTATTGTTATGTTAAATG
3326331 TGTATATTTG
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
79 6 0.06
80 44 0.43
81 1 0.01
82 1 0.01
83 32 0.31
84 18 0.18
ACGTcount: A:0.30, C:0.07, G:0.14, T:0.49
Consensus pattern (83 bp):
GTAATATTTTACCTCGTATTGTTATGTTAAATGATATTATTAAGTTTAATTACATATAGTATTTT
GTTAAATGACATCGTAAA
Found at i:3327928 original size:21 final size:20
Alignment explanation
Indices: 3327890--3327928 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
3327880 ATATCATATA
3327890 AAGAATAGGATTTTGAGTTT
1 AAGAATAGGATTTTGAGTTT
3327910 AAGAA-AGTGATTATTGAGT
1 AAGAATAG-GATT-TTGAGT
3327929 AGGATTGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.12
20 9 0.53
21 6 0.35
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (20 bp):
AAGAATAGGATTTTGAGTTT
Found at i:3332338 original size:85 final size:85
Alignment explanation
Indices: 3332172--3332347 Score: 223
Period size: 85 Copynumber: 2.1 Consensus size: 85
3332162 CGCGCAATTG
* * *
3332172 TGTGTCATAAATCTATGACGCGAATTTATGACGCTCATTGCGTGTCATTGAAGCCCCCGTCATAA
1 TGTGTCATAAATCTATGACACGAATGTATGACGCTCATTGCGTGTCATTGAAGCACCCGTCATAA
*
3332237 ATGAAGATGACACACATT-T
66 ATAAAGATGACACACATTCT
* ** * *
3332256 ATGTGTCATAAATTTATGACACTCATGTATGAC-TTACATTGCGTGTCATTGAAGCACGCGTCAT
1 -TGTGTCATAAATCTATGACACGAATGTATGACGCT-CATTGCGTGTCATTGAAGCACCCGTCA-
3332320 TAAA-AAAGATGACACACATTCT
63 TAAATAAAGATGACACACATTCT
3332342 TGTGTC
1 TGTGTC
3332348 GTGATTGTAT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
84 1 0.01
85 73 0.92
86 5 0.06
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (85 bp):
TGTGTCATAAATCTATGACACGAATGTATGACGCTCATTGCGTGTCATTGAAGCACCCGTCATAA
ATAAAGATGACACACATTCT
Found at i:3332374 original size:2 final size:2
Alignment explanation
Indices: 3332367--3332391 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3332357 TTTCGTAAAT
3332367 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
3332392 TGTAGATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3337640 original size:22 final size:22
Alignment explanation
Indices: 3337598--3337641 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
3337588 AAAAAATTTG
**
3337598 TTTAAAATAAAAAAATTAAAAT
1 TTTAAAATAAAAAAAAGAAAAT
*
3337620 TTTAAATTAAAAAAAAGAAAAT
1 TTTAAAATAAAAAAAAGAAAAT
3337642 ACAAAATTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (22 bp):
TTTAAAATAAAAAAAAGAAAAT
Found at i:3340480 original size:267 final size:265
Alignment explanation
Indices: 3340005--3340538 Score: 996
Period size: 267 Copynumber: 2.0 Consensus size: 265
3339995 AAGTTGCATT
*
3340005 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAAATCGAGATGGCTCAAAG
*
3340070 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTATAGCCGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTATAGCCGTACTAATTCCAAATCAAA
3340135 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
*
3340200 TCAGACACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTC--TCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
3340265 AAATCTA
259 AAATCTA
3340272 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAAATCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAAATCGAGATGGCTCAAAG
* *
3340337 CAATCAGTGCAAGAAAGTATAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTATAGCCGTACTAATTCCAAATCAAA
3340402 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
*
3340467 TCAGAAACATCAGATTAAACTTTCTCTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTCTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAAA
3340532 ATCTA
261 ATCTA
3340537 CC
1 CC
3340539 TAATAATACG
Statistics
Matches: 261, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
265 45 0.17
267 216 0.83
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (265 bp):
CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAAATCGAGATGGCTCAAAG
CAATCAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTATAGCCGTACTAATTCCAAATCAAA
ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
TCAGAAACATCAGATTAAACTTTCTCTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAAA
ATCTA
Found at i:3341673 original size:183 final size:183
Alignment explanation
Indices: 3341345--3341711 Score: 655
Period size: 183 Copynumber: 2.0 Consensus size: 183
3341335 ATAATTACCC
*
3341345 TTTTTTCATACGTCGGTAATTAGGCTTTTATTAGAACCCAGTATATTAAACTGAGTGTGTTAAAG
1 TTTTTTCATACGTCGGTAATTAGGCTTTTATTAGAACCCAGTACATTAAACTGAGTGTGTTAAAG
*
3341410 AGAGAATGCTCTAGTGCTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTAT
66 AGAAAATGCTCTAGTGCTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTAT
* *
3341475 ATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTACATTCCCAAGAA
131 ATCATATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTACATTCCCAAGAA
*
3341528 TTTTTTCATACGTCGGTAATTAGGCTTTTATTGGAACCCAGTACATTAAACTGAGCTGTGTTAAA
1 TTTTTTCATACGTCGGTAATTAGGCTTTTATTAGAACCCAGTACATTAAACTGAG-TGTGTTAAA
* *
3341593 GAGAAAATGCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGCCGTA
65 GAGAAAATGCTCTAGTGCTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
3341658 TATCATATC-TTAATAGAGAGTTCGCCTCTATCTGAAAGTTACATTCCCAAGAA
130 TATCATATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTACATTCCCAAGAA
3341711 T
1 T
3341712 CCAATCGGCT
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
183 97 0.55
184 79 0.45
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (183 bp):
TTTTTTCATACGTCGGTAATTAGGCTTTTATTAGAACCCAGTACATTAAACTGAGTGTGTTAAAG
AGAAAATGCTCTAGTGCTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTAT
ATCATATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTACATTCCCAAGAA
Found at i:3341747 original size:621 final size:610
Alignment explanation
Indices: 3340272--3341528 Score: 1617
Period size: 621 Copynumber: 2.0 Consensus size: 610
3340262 AGAAAATCTA
* * *
3340272 CCCAAGAATCCAATCGGCTGAA-CAACCTTATTGACAGCAGAAACCCAAATCGAGATGGCTCAAA
1 CCCAAGAATCCAATCGGCT-AATCAACCTTATTGACACCAGAAACCCAAACCGAGATGGCTAAAA
* * ** * * * * **
3340336 GCAATCAGTGCAAGAAAGTATAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAA
65 GAAATCAGTGCAAGAAACTATAG-TAAAAGAATTACTCGATGTAGCCGTACTAACGCCAAATCAA
* **
3340401 AATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACA
129 AATAGCTT-TAAC-T---AAGAGG--AAGTATACCATCAACTAACAGTACATTC--A--CCAACA
* * ** *
3340466 ATCAGAAACATCAGATTAAA-CTT-TCTCTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAG
183 ATCACAAACAGCAGA-TAAACCTTATCTGACACTAAAAACCAAAGCTTCAGTTTGTAGCAGAGAG
* * *
3340529 AGAATCTACCTAATAATACGTCCCGAGAAGGTGGACCCCACTACCTATTCTTTTGATCCATTTCA
247 AGAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTATTCTCTTGATCCATTTCA
*
3340594 AGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACGGTAACCCTAACTA
312 AGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACGATAACCCTAACTA
* * *
3340659 ATAGAATTATAAGCCTTATTACCTACGTCTGGGATTAGGCTTTTACGAAACCCGTATATTACCCT
377 ACAGAATTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGAAACCCATATATTACCCT
3340724 TCGTTCTACGGCGGTAATCAGGCTTTTATTAACCCAATATTAAACTGAGCTGTGTTAAAGAGAGA
442 TCGTTCTACGGCGGTAATCAGGCTTTTATTAACCCAATATTAAACTGAGCTGTGTTAAAGAGAGA
*
3340789 ATGCTCTAGTGTTACATTAATATATAAAACGAATGACCGATGAGTCTTTTACGCCGTATATCCTA
507 ATGCTCTAGTGCTACATTAATATATAAAACGAATGACCGATGAGTCTTTTACGCCGTATATCCTA
*
3340854 TCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATT
572 TCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTACATT
* * * *
3340893 CCCAAGAATCCAATCGGCTGATCAACCTTATTGACAGCAGAAACCCAACCCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTAATCAACCTTATTGACACCAGAAACCCAAACCGAGATGGCTAAAAG
* * ** * * * * **
3340958 CAATCAGTGCAAGAAACTCTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 AAATCAGTGCAAGAAACTATAG-TAAAAGAATTACTCGATGTAGCCGTACTAACGCCAAATCAAA
**
3341023 ATAGCTTTAACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAAT
130 ATAGCTTTAAC-T---AAGAGG--AAGTATACCATCAACTAACAGTACATTC--A--CCAACAAT
* * * * *
3341088 CAGAAACATCAGATTAAACTTTCTCTGTCACTAAAAACCAAAGCTTCAGTTTGTAGCAGAGAGAG
185 CACAAACAGCAGA-TAAACCTTATCTGACACTAAAAACCAAAGCTTCAGTTTGTAGCAGAGAGAG
* *
3341153 AATCTACCTAATAAAACGT-CCGGGAAGGTGGACCCCACCACCTGTTCTCTTGATCCATTTCAAG
249 AATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTATTCTCTTGATCCATTTCAAG
* *
3341217 AAGAAGGTGACAATGTCCATGCCTAGCAGGATTTTAGGGGAACTCATACGATAACCCTAAGTAAC
314 AAGAAGGTGACAATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACGATAACCCTAACTAAC
*
3341282 AG-ATTGTAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATAATTACCCT
379 AGAATTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGA-AACCCATAT-ATTACCCT
** * *
3341346 TTTTTCATACGTCGGTAATTAGGCTTTTATTAGAACCCAGTATATTAAACTGAG-TGTGTTAAAG
442 TCGTTC-TACGGCGGTAATCAGGCTTTTATT--AACCCA--ATATTAAACTGAGCTGTGTTAAAG
*
3341410 AGAGAATGCTCTAGTGCTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTAT
502 AGAGAATGCTCTAGTGCTACATTAATATATAAAACGAATGAC-CGATGAGTCTTTTACGCCGTAT
3341475 ATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTACATT
566 ATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTACATT
3341520 CCCAAGAAT
1 CCCAAGAAT
3341529 TTTTTCATAC
Statistics
Matches: 597, Mismatches: 28, Indels: 16
0.93 0.04 0.02
Matches are distributed among these distances:
620 117 0.20
621 244 0.41
622 70 0.12
623 22 0.04
625 6 0.01
626 50 0.08
627 88 0.15
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (610 bp):
CCCAAGAATCCAATCGGCTAATCAACCTTATTGACACCAGAAACCCAAACCGAGATGGCTAAAAG
AAATCAGTGCAAGAAACTATAGTAAAAGAATTACTCGATGTAGCCGTACTAACGCCAAATCAAAA
TAGCTTTAACTAAGAGGAAGTATACCATCAACTAACAGTACATTCACCAACAATCACAAACAGCA
GATAAACCTTATCTGACACTAAAAACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAAT
AAAACGTCCCGAGAAGGTGGACCCCACCACCTATTCTCTTGATCCATTTCAAGAAGAAGGTGACA
ATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACGATAACCCTAACTAACAGAATTATAAGC
CTTATTACCTACGTCTGGAATTAGGCTTTTACGAAACCCATATATTACCCTTCGTTCTACGGCGG
TAATCAGGCTTTTATTAACCCAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGCTA
CATTAATATATAAAACGAATGACCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAG
TTCTCCTCTATCTGAAAGTTACATT
Found at i:3342474 original size:184 final size:184
Alignment explanation
Indices: 3342158--3342526 Score: 684
Period size: 184 Copynumber: 2.0 Consensus size: 184
3342148 ATAATTATCC
3342158 TTTTTTCATACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
1 TTTTTTCATACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
*
3342223 GAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
66 GAGAAAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
*
3342288 TATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAA
131 TATCCTATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAA
*
3342342 TTTTTTTATACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
1 TTTTTTCATACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
* *
3342407 GAGAAAATTCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGCCGTA
66 GAGAAAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
*
3342472 TATCCTATCTTTAATAGGGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAA
131 TATCCTATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAA
3342526 T
1 T
3342527 CCAATCGGCT
Statistics
Matches: 179, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
184 179 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (184 bp):
TTTTTTCATACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
GAGAAAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
TATCCTATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAA
Found at i:3342756 original size:815 final size:815
Alignment explanation
Indices: 3340730--3343157 Score: 4255
Period size: 815 Copynumber: 3.0 Consensus size: 815
3340720 CCCTTCGTTC
* * *
3340730 TACGGCGGTAATCAGGCTTTTATT--AACCCA--ATATTAAACTGAGCTGTGTTAAAGAGAGAAT
1 TACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAAT
* *
3340791 GCTCTAGTGTTACATTAATATATAAAACGAATGAC-CGATGAGTCTTTTACGCCGTATATCCTAT
66 GCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGCCGTATATCCTAT
* *
3340855 CTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGATCAACC
131 CTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACC
* * *
3340920 TTATTGACAGCAGAAACCCAACCCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTCTAGTTGGA
196 TTATTGACAGCAAAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGA
*
3340985 AGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTT-TAACTTGACAAGAGGTAAA
261 AGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAA
3341049 GTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCT
326 GTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCT
* *
3341114 GTCACTAAAAACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGT-CCGGGA
391 GTCACTAAAAACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACATCCCAGGA
*
3341178 AGGTGGACCCCACCACCTGTTCTCTTGATCCATTTCAAGAAGAAGGTGACAATGTCCATGCCTAG
456 AGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCATGCCTAG
*
3341243 CAGGATTTTAGGGGAACTCATACGATAACCCTAAGTAACA-GATTGTAAGCCTTATTACCTACGT
521 CAGGATTTCAGGGGAACTCATACGATAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGT
*
3341307 CTGGAATTAGGCTTTTACGATAACCCATATAATTACCCTTTTTTCATACGTCGGTAATTAGGCTT
586 CTGGAATTAGGCTTTTACGATAACCCATATAATTATCCTTTTTTCATACGTCGGTAATTAGGCTT
* *
3341372 TTATTAGAACCCAGTATATTAAACTGAG-TGTGTTAAAGAGAGAATGCTCTAGTGCTACATTAAT
651 TTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAAT
3341436 ATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCC
716 ATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCC
*
3341501 TCTATCTGAAAGTTACATTCCCAAGAATTTTTTCA
781 TCTATCTGAAAGTTGCATTCCCAAGAATTTTTTCA
*
3341536 TACGTCGGTAATTAGGCTTTTATTGGAACCCAGTACATTAAACTGAGCTGTGTTAAAGAGAAAAT
1 TACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAAT
*
3341601 GCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGCCGTATATCATAT
66 GCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGCCGTATATCCTAT
*
3341666 C-TTAATAGAGAGTTCGCCTCTATCTGAAAGTTACATTCCCAAGAATCCAATCGGCTGAACAACC
131 CTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACC
3341730 TTATTGACAGCAAAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGA
196 TTATTGACAGCAAAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGA
3341795 AGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAA
261 AGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAA
*
3341860 GTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAAAAACATCAGATTAAACTTTCTCT
326 GTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCT
* * *
3341925 GTCACTAAAGACCAAAGCTTCAGTTTGTAACAAAGAGAGAATCTACCTAATAAAACATCCCAGGA
391 GTCACTAAAAACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACATCCCAGGA
* * *
3341990 AGGTAGACCCCACCTCCTGTTCTTTTGATCCATTTTAAGAAGAAGGTGACAATGTCCATGCCTAG
456 AGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCATGCCTAG
*
3342055 CAGGATTTCAGGGGAACTTATACGATAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGT
521 CAGGATTTCAGGGGAACTCATACGATAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGT
3342120 CTGGAATTAGGCTTTTACGATAACCCATATAATTATCCTTTTTTCATACGTCGGTAATTAGGCTT
586 CTGGAATTAGGCTTTTACGATAACCCATATAATTATCCTTTTTTCATACGTCGGTAATTAGGCTT
3342185 TTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAAT
651 TTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAAT
3342250 ATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCC
716 ATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCC
*
3342315 TCTATCTGAAAGTTGCATTCCCAAGAATTTTTTTA
781 TCTATCTGAAAGTTGCATTCCCAAGAATTTTTTCA
3342350 TACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAAT
1 TACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAAT
*
3342415 TCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGCCGTATATCCTAT
66 GCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGCCGTATATCCTAT
*
3342480 CTTTAATAGGGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACC
131 CTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACC
* * * *
3342545 TTATTGACAGCATAAAGCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAATTGTAGTTGGA
196 TTATTGACAGCAAAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGA
3342610 AGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAA
261 AGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAA
*
3342675 GTATATCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCT
326 GTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCT
* * **
3342740 TTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAATTTCCCAGGA
391 GTCACTAAAAACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACATCCCAGGA
* **
3342805 AGGTGGACCCCACCACATGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACACCTAG
456 AGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCATGCCTAG
* * * *
3342870 CAGGATTTCAGGGGAACTCATATGGTAACCCTAAGTAACAGGATTTTAAGCCTTATTACCTACCT
521 CAGGATTTCAGGGGAACTCATACGATAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGT
* * * * * ** * *
3342935 CTGGTATTTGGCTTTTACGAGAACCCGTATCATTATCCTTGGTTCCTACGTCGGTAATTTGGCTT
586 CTGGAATTAGGCTTTTACGATAACCCATATAATTATCCTTTTTTCATACGTCGGTAATTAGGCTT
3343000 TTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAAT
651 TTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAAT
*
3343065 ATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCC
716 ATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCC
3343130 TCTATCTGAAAGTTGCATTCCCAAGAAT
781 TCTATCTGAAAGTTGCATTCCCAAGAAT
3343158 CCAATCAGCT
Statistics
Matches: 1543, Mismatches: 69, Indels: 11
0.95 0.04 0.01
Matches are distributed among these distances:
806 22 0.01
808 6 0.00
810 229 0.15
811 165 0.11
812 104 0.07
813 115 0.07
814 261 0.17
815 641 0.42
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (815 bp):
TACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAAT
GCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGCCGTATATCCTAT
CTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACC
TTATTGACAGCAAAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGA
AGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAA
GTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCT
GTCACTAAAAACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACATCCCAGGA
AGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCATGCCTAG
CAGGATTTCAGGGGAACTCATACGATAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGT
CTGGAATTAGGCTTTTACGATAACCCATATAATTATCCTTTTTTCATACGTCGGTAATTAGGCTT
TTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAAT
ATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCC
TCTATCTGAAAGTTGCATTCCCAAGAATTTTTTCA
Found at i:3343823 original size:627 final size:629
Alignment explanation
Indices: 3342343--3344160 Score: 3055
Period size: 631 Copynumber: 2.9 Consensus size: 629
3342333 TCCCAAGAAT
*
3342343 TTTTTTATACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAG
1 TTTTTTCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAG
* * * *
3342408 AGAAAATTCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGCCGTAT
66 AGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTAT
* *
3342473 ATCCTATCTTTAATAGGGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTG
131 ATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTG
* *
3342538 AACAACCTTATTGACAGCATAAAGCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAATTGT
196 AACAACCTTATTGACAGCATAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGT
3342603 AGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAG
261 AGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAG
*
3342668 AGGTAAAGTATATCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAC
326 AGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAC
* **
3342733 TTTCTCTTTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAATTT
391 -TTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGT
* *
3342798 CCCAGGAAGGTGGACCCCACCACATGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCA
455 CCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCA
* * *
3342863 CACCTAGCAGGATTTCAGGGGAACTCATATGGTAACCCTAAGTAACAGGATTTTAAGCCTTATTA
520 CGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTA
* * * * * *
3342928 CCTACCTCTGGTATTTGGCTTTTACGAGAACCCGTATCATTATCC
585 CCTACCTCTGGAATTAGGCTTTTACAAGAACCCATATAATTACCC
* * *
3342973 TTGGTTCCTACGTCGGTAATTTGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
1 TT-TTTTCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
3343038 GAGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTA
65 GAGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTA
*
3343103 TATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCAGCT
130 TATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCT
* * *
3343168 GAACAACCTTATTGACAGCAGAAACCCAACTCGTGATGGCTTAAAGCAATCAGTGCAAGAAACTG
195 GAACAACCTTATTGACAGCATAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTG
*
3343233 TAGTTGGAAGAGTTATTGGTTGTAGCTGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAA
260 TAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAA
* *
3343298 GAGGTAAAGTATACCATCAACTAACAGTGGATTCAACGTCCAACAATCAGACACATCAGATTAAA
325 GAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAA
* *
3343363 C-TCTCTGTCACTAAAGACCAAAGCTTCAGTTTGTAGTAGAGAGAGAATCTACCTAATAAAACGT
390 CTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGT
* **
3343427 CCCGGGAAGGTGGA-CCCACCACCTGTTCTTTTGATCTATTTCAAGAAGAATATGACAATGTCCA
455 CCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCA
*
3343491 CGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTGACAGGATTGTAAGCCTTATTA
520 CGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTA
* *
3343556 CCTACGTCTGGAATTAGGCTTTTACAATAACCCATATAATTACCC
585 CCTACCTCTGGAATTAGGCTTTTACAAGAACCCATATAATTACCC
* * * * *
3343601 TTTTTTCTAAGTCGGTAATTAGCCTTTTACTGGATCCCAATATATTAAACTGAGCTGTGTTAAAG
1 TTTTTTCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAG
*
3343666 AGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCTGTAT
66 AGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTAT
* * *
3343731 ATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTCCATTCCCAAGAATTCAATCGGTTG
131 ATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTG
* * *
3343796 AACAACCTTATTGACAGCATTAACCCAACCCGAGATGACTCAAAGCAATCAGTGCAAGAAACTGT
196 AACAACCTTATTGACAGCATAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGT
3343861 AGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAG
261 AGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAG
*
3343926 AGGTAAAGTATACCATCAACTAAAAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAC
326 AGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAC
*
3343991 TTTCTCTGTCACTAAACACCAAAGCTTCAGTTTATAGCAGAGAGAGAATCTACCTAATAAAACGT
391 -TTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGT
*
3344056 CCCGGGAAGGTGGACCCCACCACCTATTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCA
455 CCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCA
* * *
3344121 CGCCTAGCAGGATTTTAGGGGAACTTATACGATAACCCTA
520 CGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTA
3344161 TTAGGCTTTT
Statistics
Matches: 1109, Mismatches: 75, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
627 365 0.33
628 146 0.13
629 145 0.13
630 85 0.08
631 368 0.33
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (629 bp):
TTTTTTCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAG
AGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTAT
ATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTG
AACAACCTTATTGACAGCATAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGT
AGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAG
AGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAC
TTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTC
CCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCAC
GCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTAC
CTACCTCTGGAATTAGGCTTTTACAAGAACCCATATAATTACCC
Found at i:3345331 original size:630 final size:631
Alignment explanation
Indices: 3344160--3347799 Score: 4803
Period size: 630 Copynumber: 5.8 Consensus size: 631
3344150 CGATAACCCT
3344160 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTCGTTCCTACGGCGATAATCAGGCTTTTATT
1 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTCGTTCCTACGGCGATAATCAGGCTTTTATT
*
3344225 GGAACCCAGAATATTAAACTGAGTTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
66 GGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
*
3344290 AAACGAATGACCCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAAAGAGTTCTCCTCTAT
131 AAACGAATGACCCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTAT
*
3344355 CTGAAAGTTGCATTCCCAAGAATCCAATCGGATGAACAACCTTATTGACAGCAGAAACCCAACTC
196 CTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTC
* *
3344420 GAGATGGCGCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCGGTACT
261 GAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACT
3344485 AATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGAT
326 AATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGAT
* *
3344550 TCAAAGTCCAATAATCAGAAACATCAGATTAAACTTTCTATGTCACTAAACACCAAAGCTTCAGT
391 TCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGT
3344615 TTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGTGAAGGTGGACCCTACCACCTGTTCTT
456 TTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGTGAAGGTGGACCCTACCACCTGTTCTT
3344680 TTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACG
521 TTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACG
*
3344745 GTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTGGG
586 GTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTGGA
3344791 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTCGTTCCTACGGCGATAATCAGGCTTTTATT
1 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTCGTTCCTACGGCGATAATCAGGCTTTTATT
* *
3344856 GGAACCCAGAATATTAAACTGAGTTGTGTTAAAGAGAGAATGCTCTAGTGTTACCTTAATATATA
66 GGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
* * *
3344921 AAACAAATGACCCGATGAGTCTTTTGCGCCGTATATCCTATCTTTAATAAAG-GTTCTCCTCTAT
131 AAACGAATGACCCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTAT
*
3344985 CTGAAAGTTGCATTCCCAAGAATCCAATCGGATGAACAACCTTATTGACAGCAGAAACCCAACTC
196 CTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTC
* *
3345050 GAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGTGTTATTGGTTGTAGCGGTACT
261 GAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACT
3345115 AATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGAT
326 AATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGAT
*
3345180 TCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTATGTCACTAAACACCAAAGCTTCAGT
391 TCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGT
3345245 TTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGTGAAGGTGGACCCTACCACCTGTTCTT
456 TTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGTGAAGGTGGACCCTACCACCTGTTCTT
*
3345310 TTGATCCATTTCAAGAAGAAGGTGACAATGTTCACGCCTAGCAGGATTTTAGGGGAACTCATACG
521 TTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACG
*
3345375 GTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTAG-
586 GTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTGGA
* * *
3345420 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTGGTTCCTACGGCGGTAATCAGGTTTTTATT
1 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTCGTTCCTACGGCGATAATCAGGCTTTTATT
* *
3345485 GGAACCCA-ATATATTTAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACTTTAATATAT
66 GGAACCCAGA-ATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATAT
* *
3345549 AAAACGAATGACTCGATGAGTCTGTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTA
130 AAAACGAATGACCCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTA
* *
3345614 TCTGAAAGTTGCATTCCCAAGAATCTAAAT-GGCTGAATAACCTTATTGACAGCAGAAACCCAAC
195 TCTGAAAGTTGCATTCCCAAGAATC-CAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAAC
3345678 TCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTA
259 TCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTA
3345743 CTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGG
324 CTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGG
* *
3345808 ATTCAAAGTCCAACAATCAGACACATCAGATTAAACTTTCTCTGTCACTAAAGACCAAAGCTTCA
389 ATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCA
* ** * ** * ** *
3345873 GTTTGTAGCAGAGAGAGAATCTACCTAAGAATCCAATCGCC-TGAA---CAACCTTATTGA-CAG
454 GTTTGTAGCAGAGAGAGAATCTACCTAATAAAAC-GTC-CCGTGAAGGTGGACCCTA-CCACCTG
**** * ** * * * * * *
3345933 --C-AGAAACCCAACTC--G-AGATGGCTCAAAGCAATTGT-AATGACTTAG-ATAGA--TTA-G
516 TTCTTTTGATCCATTTCAAGAAGAAGG-T--GA-CAA-TGTCCACG-CCTAGCA-GGATTTTAGG
* * * * ** * ** * * *
3345987 GGAAATAGAGAAGAAAAAAAGCAGAGAGAAAGCAGTAGAATAGAGATGAAAGAAATCTTAATTCA
574 GGAACT-CATACG---GTAACCCTA-AGTAA-CAG--G-AT---TAT--AAG---CCTT-ATT-A
* * ** * *
3346052 TTCAAAATATGCCTA
620 -CCTACGTCTG--GA
* * *** * *** * * * * *
3346067 ATT-TGCTCTTTAC-ACATTAC-TAT-TTTATTTGTTTACAATGTACTATAGAACCTAACTAAAT
1 ATTAGGCT-TTTACGAGAACCCGTATCATTA--CCCTT-C-GT-TCCTA-CG--GC-GA-T-AAT
* * * * ** * * * **** *
3346128 GCCA-GCTGTTGTCCTTGCATAACCGTTCTG-TTATT-TCCTCAGGTAT-TTGGCCACTA-AATG
54 --CAGGCT-TT-T-ATTG--GAACC---CAGAATATTAAACTGAGCTGTGTTAAAGA-GAGAATG
** * * * * * * * *
3346188 GGCTAGCTGAT-C-TGT--T-TGT----GGACT--TCAGCT--CTCTTTTTACGCCGTATATCCT
108 CTCTAG-TGTTACAT-TAATATATAAAACGAATGACCCGATGAGTC-TTTTACGCCGTATATCCT
* *
3346240 ATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGAATTCCCAAGAATCCAATCAGCTGAACAA
170 ATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAA
* * * *
3346305 CCTTAATGACAGCAGAAACCCAACTTGAGATGGCTTAAAGCAATCAGTGCAGGAAACTGTAGTTG
235 CCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTG
*
3346370 GAAGAGTTATTGGTTGTAGCTGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTA
300 GAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTA
*
3346435 AAGTATACCATCAACTAACAGTGGATTCAAAATCCAACAATCAGAAACATCAGATTAAACTTTCT
365 AAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCT
* * ** *
3346500 CTTTCACTGAACA-CAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAATTTCCCGG
430 CTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGT
* *
3346564 GAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAATGTGACAATGTCCACGCCT
495 GAAGGTGGACCCTACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCT
* * * * * *
3346629 AGTAGGATTTCAGGGGAACTTATACGGTAACCCTGAGTAACAGTATTGTAAGCCTTATTACCTAC
560 AGCAGGATTTTAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTAC
3346694 GTCTGGA
625 GTCTGGA
* * * * * * * * *
3346701 ATTAGGCTTTTACGATAACCCATATAATTACCCTTGGTTCCTATGGCGGTAATTAAGCTTTCATT
1 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTCGTTCCTACGGCGATAATCAGGCTTTTATT
*
3346766 GGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
66 GGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
* * *
3346831 AAACGAATGACTCGATGAGCCTTTTACGACGTATATCCTATCTTTAATAGAGAGTTCTCCTCTAT
131 AAACGAATGACCCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTAT
* *
3346896 CTGAAAGTTTCATTCCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACCC
196 CTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTC
3346961 GAGATGGCTCAAAGCAATCAGTGCAAGAAAC------T-G--GAGTTATTGGTTGTAGCCGTACT
261 GAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACT
3347017 AATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGAT
326 AATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGAT
* *
3347082 TCAAAGTCCAACAATCAGAAACATCAGATTAAACTATCTCTCTCACTAAACACCAAAGCTTCAGT
391 TCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGT
* * *
3347147 TTGTAGCAGATAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTGGACCCCACCACCTGTTCTT
456 TTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGTGAAGGTGGACCCTACCACCTGTTCTT
* * *
3347212 TTGATCCATTTCAAGAAGAATGTGACAATGTCCACACCTAGCAGGATTTCAGGGGAACTCATACG
521 TTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACG
* * *
3347277 GTAACCCTAAGTAATAGGATTGTAAGCCTTATTACCTACGTCTAGA
586 GTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTGGA
* * * * * * * * * * * *
3347323 ATTAGGATTTTACAATAACCCATATAATTGCCCATGGTTCCTACGTCGGTAATTAGG-GTTTATT
1 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTCGTTCCTACGGCGATAATCAGGCTTTTATT
*
3347387 GGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
66 GGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
* * *
3347452 AAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTCTCTTTAATAGAGAGTTCTCCTCTAT
131 AAACGAATGACCCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTAT
3347517 CTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTC
196 CTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTC
3347582 GAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACT
261 GAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACT
3347647 AATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGAT
326 AATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGAT
* *
3347712 TCAAAGTCCAACAATCAGACATATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGT
391 TCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGT
3347777 TTGTAGCAGAGAGAGAATCTACC
456 TTGTAGCAGAGAGAGAATCTACC
3347800 CAAGAATCTA
Statistics
Matches: 2634, Mismatches: 263, Indels: 225
0.84 0.08 0.07
Matches are distributed among these distances:
617 2 0.00
618 4 0.00
619 10 0.00
620 17 0.01
621 361 0.14
622 237 0.09
623 5 0.00
624 10 0.00
625 16 0.01
626 10 0.00
627 14 0.01
628 13 0.00
629 177 0.07
630 1036 0.39
631 190 0.07
632 7 0.00
633 3 0.00
634 9 0.00
635 8 0.00
636 10 0.00
637 4 0.00
638 6 0.00
639 3 0.00
641 3 0.00
642 6 0.00
643 1 0.00
644 8 0.00
645 3 0.00
646 8 0.00
647 10 0.00
648 3 0.00
649 9 0.00
650 49 0.02
651 277 0.11
652 12 0.00
653 9 0.00
654 11 0.00
655 15 0.01
656 8 0.00
657 6 0.00
658 7 0.00
659 4 0.00
660 1 0.00
661 17 0.01
662 10 0.00
663 4 0.00
664 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (631 bp):
ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTCGTTCCTACGGCGATAATCAGGCTTTTATT
GGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
AAACGAATGACCCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTAT
CTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTC
GAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACT
AATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGAT
TCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGT
TTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGTGAAGGTGGACCCTACCACCTGTTCTT
TTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACG
GTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTGGA
Found at i:3347554 original size:621 final size:625
Alignment explanation
Indices: 3346222--3347799 Score: 2626
Period size: 621 Copynumber: 2.5 Consensus size: 625
3346212 TCAGCTCTCT
*
3346222 TTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGAATTCCCAAGA
1 TTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGA
* * * *
3346287 ATCCAATCAGCTGAACAACCTTAATGACAGCAGAAACCCAACTTGAGATGGCTTAAAGCAATCAG
66 ATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAG
* *
3346352 TGCAGGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCTGTACTAATTCCAAATCAAAATAGCTT
131 TGCAAGAAAC-----TTGG-AGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTT
*
3346417 GTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAATCCAACAATCAGAAA
190 GTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAA
* *
3346482 CATCAGATTAAACTTTCTCTTTCACTGAACA-CAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTA
255 CATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTA
**
3346546 CCTAATAAAATTTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAT
320 CCTAATAAAACGTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAT
* * * *
3346611 GTGACAATGTCCACGCCTAGTAGGATTTCAGGGGAACTTATACGGTAACCCTGAGTAACAGTATT
385 GTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATT
* *
3346676 GTAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATAATTACCCTTGGTTC
450 GTAAGCCTTATTACCTACGTCTAGAATTAGGCTTTTACGAGAACCCATATAATTACCCTTGGTTC
* * * *
3346741 CTATGGCGGTAATTAAGCTTTCATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAA
515 CTACGGCGGTAATCAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAA
*
3346806 TGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGCC
580 TGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTC
* *
3346852 TTTTACGACGTATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTTCATTCCCAAGA
1 TTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGA
*
3346917 ATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACCCGAGATGGCTCAAAGCAATCAG
66 ATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAG
3346982 TGCAAGAAAC-T-G-GAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACT
131 TGCAAGAAACTTGGAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACT
3347044 TGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAG
196 TGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAG
* * *
3347109 ATTAAACTATCTCTCTCACTAAACACCAAAGCTTCAGTTTGTAGCAGATAGAGAATCTACCTAAT
261 ATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAAT
3347174 AAAACGTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAATGTGACA
326 AAAACGTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAATGTGACA
* *
3347239 ATGTCCACACCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAATAGGATTGTAAGC
391 ATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGC
* * * * * *
3347304 CTTATTACCTACGTCTAGAATTAGGATTTTACAATAACCCATATAATTGCCCATGGTTCCTACGT
456 CTTATTACCTACGTCTAGAATTAGGCTTTTACGAGAACCCATATAATTACCCTTGGTTCCTACGG
* *
3347369 CGGTAATTAGG-GTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
521 CGGTAATCAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
*
3347433 AGTGTTACATTAATATATAAAATGAATGACTCGATGAGTC
586 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTC
*
3347473 TTTTACGCCGTATATCCTCTCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGA
1 TTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGA
3347538 ATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAG
66 ATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAG
3347603 TGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTT
131 TGCAAGAAAC-----TTGG-AGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTT
*
3347668 GTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGACA
190 GTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAA
*
3347733 TATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTA
255 CATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTA
3347798 CC
320 CC
3347800 CAAGAATCTA
Statistics
Matches: 894, Mismatches: 44, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
621 360 0.40
622 228 0.26
623 1 0.00
624 1 0.00
627 1 0.00
628 1 0.00
630 302 0.34
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (625 bp):
TTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGA
ATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAG
TGCAAGAAACTTGGAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACT
TGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAG
ATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAAT
AAAACGTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAATGTGACA
ATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGC
CTTATTACCTACGTCTAGAATTAGGCTTTTACGAGAACCCATATAATTACCCTTGGTTCCTACGG
CGGTAATCAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTC
Found at i:3348007 original size:267 final size:267
Alignment explanation
Indices: 3347531--3348066 Score: 1036
Period size: 267 Copynumber: 2.0 Consensus size: 267
3347521 AAGTTGCATT
3347531 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
3347596 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
3347661 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* *
3347726 TCAGACATATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
3347791 GAATCTA
261 GAATCTA
* *
3347798 CCCAAGAATCTAATCGGCTGAACAACCTTATTGACAGCAGAAATCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
3347863 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
3347928 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
3347993 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
3348058 GAATCTA
261 GAATCTA
3348065 CC
1 CC
3348067 TAATATAACG
Statistics
Matches: 265, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
267 265 1.00
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (267 bp):
CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
GAATCTA
Found at i:3349146 original size:630 final size:626
Alignment explanation
Indices: 3347798--3349062 Score: 2117
Period size: 630 Copynumber: 2.0 Consensus size: 626
3347788 AGAGAATCTA
* * *
3347798 CCCAAGAATCTAATCGGCTGAA-CAACCTTATTGACAGCAGAAATCC-AACTCGAGATGGCTCAA
1 CCCAAGAATCCAATCGGCT-AATCAACCTTATTGACACCAGAAACCCAAAC-CGAGATGGCTCAA
*
3347861 AGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCA
64 AG--A--AG-GCAAGAAACTCTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCA
*
3347926 AAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAAC
124 AAATAGCTTGAGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAAC
*
3347991 AATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGA
189 AATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAACAGAGA
* * *
3348056 GAGAATCTACCTAATATAACGTCTCGAGAAGGTGGACCCCACTACCTGTTCTTTTGATCTATTTC
254 GAGAATCTACCTAATAAAACGTCTCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTC
*
3348121 AAGAAGAAGGTGACAATATCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAACT
319 AAGAAGAAGGTGACAATATCCACGCCTAGCAGGATTTCAGGGGAACTCATACGATAACCCTAACT
*
3348186 AACAGAATTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATATCCCATATAATTAC
384 AACAGAATTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATAATTAC
* *
3348251 CCTTGGTTCTTAGGTCGGTAATTTGGCTTTTATTAGAACCCAGTATATTAAACTGAGCTGTGTTA
449 CCTTGGTTCTTACGTCGGTAATTAGGCTTTTATTAGAACCCAGTATATTAAACTGAGCTGTGTTA
3348316 AAGAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCG
514 AAGAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCG
*
3348381 TATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATT
579 TATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTACATT
* * * *
3348429 CCCCAGAATCCAATCGGCTGATCAACCTTATTGACAGCAGAAACCCAACCCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTAATCAACCTTATTGACACCAGAAACCCAAACCGAGATGGCTCAAAG
3348494 CAATCAGTGCAAGAAACTCTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 --A--AG-GCAAGAAACTCTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
3348559 ATAGCTT-AGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
126 ATAGCTTGAGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
*
3348623 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAATACCAAAGCTTCAGTTTGTAACAGAGAGA
191 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAACAGAGAGA
*
3348688 GAATCTACCTAATAAAACGTC-CGGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCA
256 GAATCTACCTAATAAAACGTCTC-GAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCA
* *
3348752 AGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGATAACCCTAAGTA
320 AGAAGAAGGTGACAATATCCACGCCTAGCAGGATTTCAGGGGAACTCATACGATAACCCTAACTA
* * * *
3348817 ATAGGATTGTAAGTCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATAATTA-C
385 ACAGAATTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATAATTACC
** *
3348881 CTTTTTTCTTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAA
450 CTTGGTTCTTACGTCGGTAATTAGGCTTTTATTAGAACCCAGTATATTAAACTGAGCTGTGTTAA
3348946 AGAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGT
515 AGAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGT
3349011 ATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTACATT
580 ATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTACATT
3349058 CCCAA
1 CCCAA
3349063 TAATTTTTTC
Statistics
Matches: 603, Mismatches: 28, Indels: 8
0.94 0.04 0.01
Matches are distributed among these distances:
629 177 0.29
630 298 0.49
631 126 0.21
632 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (626 bp):
CCCAAGAATCCAATCGGCTAATCAACCTTATTGACACCAGAAACCCAAACCGAGATGGCTCAAAG
AAGGCAAGAAACTCTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGC
TTGAGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGA
AACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAACAGAGAGAGAATC
TACCTAATAAAACGTCTCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGA
AGGTGACAATATCCACGCCTAGCAGGATTTCAGGGGAACTCATACGATAACCCTAACTAACAGAA
TTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATAATTACCCTTGGT
TCTTACGTCGGTAATTAGGCTTTTATTAGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAG
AATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCC
TATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTACATT
Found at i:3349198 original size:184 final size:184
Alignment explanation
Indices: 3348882--3349246 Score: 669
Period size: 184 Copynumber: 2.0 Consensus size: 184
3348872 TATAATTACC
3348882 TTTTTTCTTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
1 TTTTTTCTTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
*
3348947 GAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
66 GAGAAAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
*
3349012 TATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTACATTCCCAATAA
131 TATCCTATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTACATTCCCAATAA
3349066 TTTTTTCATT-CGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAA
1 TTTTTTC-TTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAA
* *
3349130 AGAGAAAATGCTCTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGTCGT
65 AGAGAAAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGT
*
3349195 ATATCCTATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAA
130 ATATCCTATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTACATTCCCAA
3349247 GAATCCAATC
Statistics
Matches: 175, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
184 173 0.99
185 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (184 bp):
TTTTTTCTTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
GAGAAAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
TATCCTATCTTTAATAGAGAGTTCGCCTCTATCTGAAAGTTACATTCCCAATAA
Found at i:3349831 original size:814 final size:813
Alignment explanation
Indices: 3348264--3349876 Score: 2787
Period size: 814 Copynumber: 2.0 Consensus size: 813
3348254 TGGTTCTTAG
* *
3348264 GTCGGTAATTTGGCTTTTATTAGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCT
1 GTCGGTAATTAGGCTTTTATTAGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAATGCT
3348329 CTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTT
66 CTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTT
* * *
3348394 TAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCCAGAATCCAATCGGCTGATCAACCTTA
131 TAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTA
*
3348459 TTGACAGCAGAAACCCAACCCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTCTAGTTGGAAGA
196 TTGACAGCAGAAACCCAACCCGAGATGGATCAAAGCAATCAGTGCAAGAAACTCTAGTTGGAAGA
3348524 GTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTAGACTTGACAAGAGGTAAAGTAT
261 GTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTAGACTTGACAAGAGGTAAAGTAT
*
3348589 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCA
326 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAATTTCTCTGTCA
* * * *
3348654 CTAAATACCAAAGCTTCAGTTTGTAACAGAGAGAGAATCTACCTAATAAAACGTCCGGGGAAGGT
391 CTAAACACCAAAGCTTCAGTTTATAACAGAGAGAGAATCTACCTAATAAAACATCCCGGGAAGGT
*
3348719 GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGG
456 GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACACCTAGCAGG
* * * * *
3348784 ATTTCAGGGGAACTCATACGATAACCCTAAGTAATAGGATTGTAAGTCTTATTACCTACGTCTGG
521 ATTTCAAGGGAACTCATACGATAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACCTATGG
* ** * *
3348849 AATTAGGCTTTTACGATAACCCATATAATTACCTTTTTTCTTACGTCGGTAATTAGGCTTTTATT
586 AATTAGGCTTTTACGAGAACCCATATAATTACCTTGGTTCCTACGTCGGTAATTAGGCATTTATT
*
3348914 GGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
651 GGAACCCAATATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
* *
3348979 AAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTAT
716 AAATGAATGAATCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTATAT
3349044 CTGAAAGTTACATTCCCAATAATTTTTTCATTC
781 CTGAAAGTTACATTCCCAATAATTTTTTCATTC
*
3349077 GTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAATGCT
1 GTCGGTAATTAGGCTTTTATTAGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAATGCT
* *
3349142 CTAGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGTCGTATATCCTATCTT
66 CTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTT
3349207 TAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTA
131 TAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTA
* *
3349272 TTGACAGCAGAAACCCAACTCGAGATGGATCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGA
196 TTGACAGCAGAAACCCAACCCGAGATGGATCAAAGCAATCAGTGCAAGAAACTCTAGTTGGAAGA
*
3349337 GTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTA
261 GTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTT-AGACTTGACAAGAGGTAAAGTA
*
3349402 TACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAATTTCTCTTTC
325 TACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAATTTCTCTGTC
* *
3349467 ACTTAACACCAAAGCTTCAGTTTATAGCAGAGAGAGAATCTACCTAATAAAACATCCCGGGAAGG
390 ACTAAACACCAAAGCTTCAGTTTATAACAGAGAGAGAATCTACCTAATAAAACATCCCGGGAAGG
*
3349532 TGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCATACCTAGCAG
455 TGGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACACCTAGCAG
* * *
3349597 GATTTCAAGGGAACTCATATGGTAACCCTAAGTAACAGGATTTTAAGCCTTATTACCTACCTATG
520 GATTTCAAGGGAACTCATACGATAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACCTATG
* * * *
3349662 GAATTTGGCTTTTACGAGAACCCGTATCATTATCCTTGGTTCCTACGTCGGTAATTTGG-ATTTA
585 GAATTAGGCTTTTACGAGAACCCATATAATTA-CCTTGGTTCCTACGTCGGTAATTAGGCATTTA
*
3349726 TTGGAATCCAATATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATA
649 TTGGAACCCAATATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATA
*
3349791 TGAAATGAATGAATCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTAT
714 TAAAATGAATGAATCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTAT
**
3349856 ATCTGAAAGTTGTATTCCCAA
779 ATCTGAAAGTTACATTCCCAA
3349877 GAATCCAATC
Statistics
Matches: 752, Mismatches: 46, Indels: 3
0.94 0.06 0.00
Matches are distributed among these distances:
813 291 0.39
814 439 0.58
815 22 0.03
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (813 bp):
GTCGGTAATTAGGCTTTTATTAGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAATGCT
CTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTT
TAATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTA
TTGACAGCAGAAACCCAACCCGAGATGGATCAAAGCAATCAGTGCAAGAAACTCTAGTTGGAAGA
GTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTAGACTTGACAAGAGGTAAAGTAT
ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAATTTCTCTGTCA
CTAAACACCAAAGCTTCAGTTTATAACAGAGAGAGAATCTACCTAATAAAACATCCCGGGAAGGT
GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACACCTAGCAGG
ATTTCAAGGGAACTCATACGATAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACCTATGG
AATTAGGCTTTTACGAGAACCCATATAATTACCTTGGTTCCTACGTCGGTAATTAGGCATTTATT
GGAACCCAATATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCTAGTGTTACATTAATATATA
AAATGAATGAATCGATGAGTCTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTATAT
CTGAAAGTTACATTCCCAATAATTTTTTCATTC
Found at i:3353344 original size:631 final size:631
Alignment explanation
Indices: 3349079--3361516 Score: 17735
Period size: 631 Copynumber: 19.7 Consensus size: 631
3349069 TTTCATTCGT
* *
3349079 CGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAAAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* * *
3349144 AGTGTTACATTAATATATAAAATGAATTACTCGATGAGTCTTTTACGTCGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
*
3349209 ATAGAGAGTTCGCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
*
3349274 GACAGCAGAAACCCAACTCGAGATGGATCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
3349339 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
* *
3349404 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAAATTTCTCTTTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
* * *
3349469 TTAACACCAAAGCTTCAGTTTATAGCAGAGAGAGAATCTACCTAATAAAACATCCCGGGAAGGTG
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
**
3349534 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCATACCTAGCAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* * * * *
3349599 TTTCAAGGGAACTCATATGGTAACCCTAAGTAACAGGATTTTAAGCCTTATTACCTACCTATGGA
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGGA
* * * * *
3349664 ATTTGGCTTTTACGAGAACCCGTATCATTATCCTTGGTTCCTACGT
586 ATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
* * *
3349710 CGGTAATTTGG-ATTTATTGGAATCCA-ATATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTC
1 CGGTAATTAGGCTTTTATTGGAACCCAGA-ATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTC
* * *
3349773 TAGTGTTACATTAATATATGAAATGAATGAATCGATGAGTCTTTTACGCCGTATATCCTATCTTT
65 TAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTT
* *
3349838 AATAGAGAGTTCTCCTATATCTGAAAGTTGTATTCCCAAGAATCCAATCGGCTGAACAACCTTAT
130 AATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTAT
* * *
3349903 TGACAGCAGAAACCCAACTCGTGACGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGAAGAG
195 TGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAG
* *
3349968 TTATTGGTTGTAGCTGTACTAATTCCAAATCAAAATAGCTTGTGACTTGAGAAGAGGTAAAGTAT
260 TTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTAT
*
3350033 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGACACATCAGATTAAAC--TCTCTGTCA
325 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCA
* * * * *
3350096 CTAAAGACCAAAGCTTCAGTTTGTAGTAGAGAGATAATCTACCTAATAAAACATCACGGGAAGGT
390 CTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGT
* ** * *
3350161 GGACCCCACCACCTGTTCTTTTGATCTATTTCAAGAAGAATATGACAATGTCCACACCTAACAGG
455 GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGG
* * *
3350226 ATTTCAGAGGAACTCATACGGTAACCCTAAGTGACAGGATTGTAAGCCTTATTACCTACGTATGG
520 ATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGG
* * * * * *
3350291 AATTAGGCTTTTACAATAACCCATATAATTACCCTT-TTTTCTAAGT
585 AATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
* * ** *
3350337 CGGTAATTAGCCTTTTACTGGAACCCATTATATTAAATTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* *
3350402 AGTGTTACATTAATATATAAAACGAATGACCCGATGAGTCGTTTACGCCGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* * *
3350467 ATAGAGAG-T-T-CTCTATCTGAAAGTTGTATTCCCAAGAATACAATCGGATGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
3350529 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
*
3350594 TATTGGTTGTAGCCGTACTAATTCCAAATAAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
* * * *
3350659 CCATCAACTAACAGTGGATTCAAATTCCAACAATCAGAAACATCAGATTAAACTTTCTATATCAG
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
*
3350724 TAAACACCAAAGCTTCAGTTTGTAGC--AGAGAGAATCTACCTAAT-AAACGTCCCGAGAAGGTG
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
*
3350786 GACCCTACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* * * * *
3350851 TTTCAGTGGAACTCATATGCTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTAGA
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGGA
* *
3350916 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTGGTTCCTACGG
586 ATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
* * ** * *
3350962 CGGTAATCAGGTTTTTATTGGAACATAGCATATTTAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* *
3351027 AGTGTTACTTTAATATATGAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* * *
3351092 ATAGAGAGTTCTCCTCTATATGAAAGTTGCATTCCCAAGAATCCAAACGACTGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
3351157 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
*
3351222 TATTGGTTGTAGCCATACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
*
3351287 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGACACATCAGATTAAA-TTTCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
* * *
3351351 TAAACATCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCT-A-AGAA--T-CC---AA--TC
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
*** * * **** * ** * * * *
3351406 GACTGAACAACCTTATTGACAGCAGAAACCCAACTC--G-AGATGGCTCAAAGCAATTGT-AATG
456 GACCCCACCACC-TGTT--CTTTTG--ATCCATTTCAAGAAGAAGG-T--GA-CAA-TGTCCACG
* * * * * * ** ** * * * *
3351467 ACTTAG-ATAGATTT---GGGAAATAGAGAAGAAAAAAGC-AGAG-AGAAAGTAGTAGAATAG--
511 -CCTAGCA-GGATTTCAGGGGAACT-CATACG-GTAACCCTA-AGTA-ACAGGA-TTGTA-AGCC
** * *** ** * * * ** ** * * *
3351524 AGATGAAAGAAATCT-TAATT---CATTCAAAATATGCC-TA--ATTTGCTCTT--TACACATTA
568 TTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATCA-TTACCCTTGGTTC-C--TA
*
3351580 C-T
629 CGG
*** * * * * * * * **** *
3351582 ATTTTATT-TG-TTTACAAT-GTACCATAGAACCTAACTAAA-TGCCAGCTGTGTCCTTGA-ATA
1 CGGTAATTAGGCTTT-TATTGGAACC-CAGAA--T-ATTAAACTG--AGCTGTGTTAAAGAGAGA
* * * * * * * * ** *
3351642 ACCGTTCT-GTTATTTCCTCAGGTATTTGGCCACTAAATGGGCTAGCTGATCTGTTTGTGGACTT
59 A-TGCTCTAG-TGTTACATTA---ATAT----A-TAAA------A-C-GA-ATG--ACTCGA--T
* * *
3351706 CAGCTCTCTTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCAATCTGAAAGTTGAA
101 GAG---TC-TTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCA
** *
3351771 TTCCCAAGAATCCAATCATCTGAACAACCTTATTGACAACAGAAACCCAACTCGAGATGGCTCAA
162 TTCCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAA
* **
3351836 AGCAATCAGTGCAAGAAACTCTAGTTGGAAGAGTTATTGGTTGTAGTTGTACTAATTCCAAATCA
227 AGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCA
* *
3351901 AAATAGCTTGTGACTTGACAAGAGGTAGAGTATACCATCAACTAACAGTGGATTCAAAATCCAAC
292 AAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAAC
* * *
3351966 AATCAGAAATATCAGATTAAACTTTCTCTTTCACTGAACACCAAAGCTTCAGTTTGTAGCAGAGA
357 AATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGA
* **
3352031 GA-AATATACCTAATAAAATTTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTC
422 GAGAATCTACCTAATAAAACGTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTC
* * *
3352095 AAGAAGAATGTGACAATGTCCACGCCTAGCAGGATTTCAGGAGAACTCATACGGTAACCCTGAGT
487 AAGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGT
* * *
3352160 AACAGTATTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATAATTAC
552 AACAGGATTGTAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATCATTAC
*
3352225 CCTTGGTTTCTACGG
617 CCTTGGTTCCTACGG
* * *
3352240 CGGTAATTAAGCTTTCATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* * *
3352305 TGTGTTACATTAATATATAAAACGAATGACTCGATGAGCCTTTTATGCCGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* * *
3352370 ATAGATAGTTCTCCTCTATCTGAAAGTTGCATTCCTAAGAATCCAATCCGCTGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
*
3352435 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
*
3352500 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTCTA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
* *
3352565 CCATCAACTAACAGTGGATTCAAAGTCCAATAATCAGAAACAACAGATTAAACTTTCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
* *
3352630 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACATAATAAAACGTCCCGGGAAGGTA
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
* * * *
3352695 GACCCCACCACATGTTCTTTTGATCCAGTTCAAGAAGAAGGTGATAATGTCTACGCCTAGCAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* * *
3352760 TTTTAGGGGAACTCATACGGTAACCCTAAGGAACAGGATTGTAAGTCTTATTACCTACGTCTGGA
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGGA
* * * *
3352825 TTTAGGCTTTTAGGAGAACCCATATCATTACCCTTGGTTCCCACGG
586 ATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
*
3352871 CGGTAATCAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* * * *
3352936 GGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACTCCATATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
3353001 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
*
3353066 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAGACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
3353131 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
3353196 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
* *
3353261 TAAACACAAAAGCTTCAGTTTGTAACAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
*
3353326 GACCCCACCACCTGTTCTTTTGATCCATTTCAAAAAGAAGGTGACAATGTCCACGCCTAGCAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* * * * *
3353391 TTTCAAGGGAACTCATACGGAAACCCTGAGTAACAGTATTGTAAGCCTTATTACCTACAG-CTAG
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTAC-GTCTGG
*
3353455 AATTAGGCTTTTACGATAACCCATAT-ATTTACCCTTGGTTCTTACGG
585 AATTAGGCTTTTACGATAACCCATATCA-TTACCCTTGGTTCCTACGG
* * * *
3353502 TGGTAATTAAGCTTTAATTGGAACCCAGCATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
3353567 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACG-CGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* *
3353631 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGATGAACAACCTTAAT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
*
3353696 GACAGTAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
*
3353761 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGAAAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
*
3353826 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTCCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
**
3353891 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAATTTCCCGGGAAGGTG
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
3353956 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* *
3354021 TTTCAGGGGAACTCATACGGTAACCCTGAGTAACAGTATTGTAAGCCTTATTACCTACGTCTGGA
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGGA
3354086 ATTAGGCTTTTACGATAACCCATA--ATTACCCTTGGTTCCTACGG
586 ATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
* * *
3354130 CGGTAATTAAGCTTTCATTGGAACCCA-ATATATTAAACTGAGATGTGTTAAAGAGAGAATGCTC
1 CGGTAATTAGGCTTTTATTGGAACCCAGA-ATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTC
* *
3354194 TAGTGTTACATTAATATATAAAACGAATGACTCGATGAGCCTTTTACGACGTATATCCTATCTTT
65 TAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTT
* ** * * *
3354259 AATAGAGAGTTCTCCTATATCTGAAAGTTTTATTCCTAAGAATCCAATCAGTTGAACAACCTTAT
130 AATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTAT
*
3354324 TGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGAAGAG
195 TGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAG
* *
3354389 TTATTGGTTGTAGCCATACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGATAAAGTAT
260 TTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTAT
* *
3354454 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAAAAACATCAGATTAAACTTTCTCTATCA
325 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCA
* *
3354519 CTAAACACCAAAGCTTCAGTTTATAGCAGAGAGAGAATCTACCTAATAAAACATCCCGGGAAGGT
390 CTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGT
**
3354584 GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCATACCTAGCAGG
455 GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGG
* * * * *
3354649 ATTTCAAGGGAACTCATATGGTAACCCTAAGTAACAGGATTTTAAGCCTTATTACCTACCTATGG
520 ATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGG
* * * * *
3354714 AATTTGGCTTTTACGAGAACCCGTATCATTATCCTTGGTTCCTACGT
585 AATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
* * *
3354761 CGGTAATTTGGATTTTATTGGAATCCA-ATATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTC
1 CGGTAATTAGGCTTTTATTGGAACCCAGA-ATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTC
* * *
3354825 TAGTGTTACATTAATATATGAAATGAATGAATCGATGAGTCTTTTACGCCGTATATCCTATCTTT
65 TAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTT
* *
3354890 AATAGAGAGTTCTCCTATATCTGAAAGTTGTATTCCCAAGAATCCAATCGGCTGAACAACCTTAT
130 AATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTAT
* * *
3354955 TGACAGCAGAAACCCAACTCGTGACGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGAAGAG
195 TGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAG
*
3355020 TTATTGGTTGTAGCTGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTAT
260 TTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTAT
*
3355085 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGACACATCAGATTAAAC--TCTCTGTCA
325 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCA
* * * * *
3355148 CTAAAGACCAAAGCTTCAGTTTGTAGTAGAGAGATAATCTACCTAATAAAACATCACGGGAAGGT
390 CTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGT
* ** * *
3355213 GGACCCCACCACCTGTTCTTTTGATCTATTTCAAGAAGAATATGACAATGTCCACACCTAACAGG
455 GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGG
* * *
3355278 ATTTCAGAGGAACTCATACGGTAACCCTAAGTGACAGGATTGTAAGCCTTATTACCTACGTATGG
520 ATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGG
* * * * * *
3355343 AATTAGGCTTTTACAATAACCCATATAATTACCCTT-TTTTCTAAGT
585 AATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
* * ** *
3355389 CGGTAATTAGCCTTTTACTGGAACCCATTATATTAAATTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* *
3355454 AGTGTTACATTAATATATAAAACGAATGACCCGATGAGTCGTTTACGCCGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* * *
3355519 ATAGAGAG-T-T-CTCTATCTGAAAGTTGTATTCCCAAGAATACAATCGGATGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
3355581 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
*
3355646 TATTGGTTGTAGCCGTACTAATTCCAAATAAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
* * * *
3355711 CCATCAACTAACAGTGGATTCAAATTCCAACAATCAGAAACATCAGATTAAACTTTCTATATCAG
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
*
3355776 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGAGAAGGTG
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
*
3355841 GACCCTACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* * * * *
3355906 TTTCAGTGGAACTCATATGCTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTAGA
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGGA
* *
3355971 ATTAGGCTTTTACGAGAACCCGTATCATTACCCTTGGTTCCTACGG
586 ATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
* * ** * *
3356017 CGGTAATCAGGTTTTTATTGGAACATAGCATATTTAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* *
3356082 AGTGTTACTTTAATATATGAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* * *
3356147 ATAGAGAGTTCTCCTCTATATGAAAGTTGCATTCCCAAGAATCCAAACGACTGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
3356212 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
*
3356277 TATTGGTTGTAGCCATACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
*
3356342 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGACACATCAGATTAAACTTTCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
* * *
3356407 TAAACATCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCT-A-AGAA--T-CC---AA--TC
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
*** * * **** * ** * * * *
3356462 GACTGAACAACCTTATTGACAGCAGAAACCCAACTC--G-AGATGGCTCAAAGCAATTGT-AATG
456 GACCCCACCACC-TGTT--CTTTTG--ATCCATTTCAAGAAGAAGG-T--GA-CAA-TGTCCACG
* * * * * * * ** * * * *
3356523 ACTTAG-ATAGATTT---GGGAAATAGAGAAGAAGAAAAGC-AGAG-AGAAAGTAGTAGAATAG-
511 -CCTAGCA-GGATTTCAGGGGAACT-CATACG--GTAACCCTA-AGTA-ACAGGA-TTGTA-AGC
** * *** ** * * * ** ** * * *
3356581 -AGATGAAAGAAATCT-TAATT---CATTCAAAATATGCC-TA--ATTTGCTCTT--TACACATT
567 CTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATCA-TTACCCTTGGTTC-C--T
*
3356636 AC-T
628 ACGG
*** * * * * * * * **** *
3356639 ATTTTATT-TG-TTTACAAT-GTACCATAGAACCTAACTAAA-TGCCAGCTGTTGTCCTTGA-AT
1 CGGTAATTAGGCTTT-TATTGGAACC-CAGAA--T-ATTAAACTG--AGCTG-TGTTAAAGAGAG
* * * * * * * * ** *
3356699 AACCGTTCT-GTTATTTCCTCAGGTATTTGGCCACTAAATGGGCTAGCTGATCTGTTTGTGGACT
58 AA-TGCTCTAG-TGTTACATTA---ATAT----A-TAAA------A-C-GA-ATG--ACTCGA--
* * *
3356763 TCAGCTCTCTTTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCAATCTGAAAGTTGA
100 TGAG---TC-TTTTACGCCGTATATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGC
** *
3356828 ATTCCCAAGAATCCAATCATCTGAACAACCTTATTGACAACAGAAACCCAACTCGAGATGGCTCA
161 ATTCCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCA
* **
3356893 AAGCAATCAGTGCAAGAAACTCTAGTTGGAAGAGTTATTGGTTGTAGTTGTACTAATTCCAAATC
226 AAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATC
* *
3356958 AAAATAGCTTGTGACTTGACAAGAGGTAGAGTATACCATCAACTAACAGTGGATTCAAAATCCAA
291 AAAATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAA
* * *
3357023 CAATCAGAAATATCAGATTAAACTTTCTCTTTCACTGAACACCAAAGCTTCAGTTTGTAGCAGAG
356 CAATCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAG
* **
3357088 AGAGAATATACCTAATAAAATTTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTT
421 AGAGAATCTACCTAATAAAACGTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTT
* * *
3357153 CAAGAAGAATGTGACAATGTCCACGCCTAGCAGGATTTCAGGAGAACTCATACGGTAACCCTGAG
486 CAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAG
* * *
3357218 TAACAGTATTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATAATTA
551 TAACAGGATTGTAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATCATTA
*
3357283 CCCTTGGTTTCTACGG
616 CCCTTGGTTCCTACGG
* * *
3357299 CGGTAATTAAGCTTTCATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* * *
3357364 TGTGTTACATTAATATATAAAACGAATGACTCGATGAGCCTTTTATGCCGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* * *
3357429 ATAGATAGTTCTCCTCTATCTGAAAGTTGCATTCCTAAGAATCCAATCCGCTGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
*
3357494 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
*
3357559 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTCTA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
* *
3357624 CCATCAACTAACAGTGGATTCAAAGTCCAATAATCAGAAACAACAGATTAAACTTTCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
* *
3357689 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACATAATAAAACGTCCCGGGAAGGTA
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
* * *
3357754 GACCCCACCACCTGTTCTTTTGATCCAGTTCAAGAAGAAGGTGATAATGTCTACGCCTAGCAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* * *
3357819 TTTTAGGGGAACTCATACGGTAACCCTAAGGAACAGGATTGTAAGTCTTATTACCTACGTCTGGA
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGGA
* * * *
3357884 TTTAGGCTTTTAGGAGAACCCATATCATTACCCTTGGTTCCCACGG
586 ATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
*
3357930 CGGTAATCAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* * * *
3357995 GGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACTCCATATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
3358060 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
*
3358125 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAGACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
3358190 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
3358255 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
* *
3358320 TAAACACAAAAGCTTCAGTTTGTAACAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
*
3358385 GACCCCACCACCTGTTCTTTTGATCCATTTCAAAAAGAAGGTGACAATGTCCACGCCTAGCAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* * * * *
3358450 TTTCAAGGGAACTCATACGGAAACCCTGAGTAACAGTATTGTAAGCCTTATTACCTACAG-CTAG
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTAC-GTCTGG
*
3358514 AATTAGGCTTTTACGATAACCCATAT-ATTTACCCTTGGTTCTTACGG
585 AATTAGGCTTTTACGATAACCCATATCA-TTACCCTTGGTTCCTACGG
* * * *
3358561 TGGTAATTAAGCTTTAATTGGAACCCAGCATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
3358626 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* *
3358691 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGATGAACAACCTTAAT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
*
3358756 GACAGTAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
*
3358821 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGAAAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
*
3358886 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTCCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
**
3358951 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAATTTCCCGGGAAGGTG
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
3359016 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* *
3359081 TTTCAGGGGAACTCATACGGTAACCCTGAGTAACAGTATTGTAAGCCTTATTACCTACGTCTGGA
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGGA
*
3359146 ATTAGGCTTTTACGATAACCCATATAATTACCCTTGGTTCCTACGG
586 ATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
* * *
3359192 CGGTAATTAAGCTTTCATTGGAACCCA-ATATATTAAACTGAGATGTGTTAAAGAGAGAATGCTC
1 CGGTAATTAGGCTTTTATTGGAACCCAGA-ATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTC
* *
3359256 TAGTGTTACATTAATATATAAAACGAATGACTCGATGAGCCTTTTACGACGTATATCCTATCTTT
65 TAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTT
* ** * * *
3359321 AATAGAGAGTTCTCCTATATCTGAAAGTTTTATTCCTAAGAATCCAATCAGTTGAACAACCTTAT
130 AATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTAT
*
3359386 TGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGAAGAG
195 TGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAG
* *
3359451 TTATTGGTTGTAGCCATACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGATAAAGTAT
260 TTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTAT
* *
3359516 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAAAAACATCAGATTAAACTTTCTCTATCA
325 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCA
* *
3359581 CTAAACACCAAAGCTTCAGTTTATAGCAGAGAGAGAATCTACCTAATAAAACATCCCGGGAAGGT
390 CTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGT
**
3359646 GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCATACCTAGCAGG
455 GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGG
* *
3359711 ATTTCAAGGGAACTCATACGGTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTGG
520 ATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGG
* * * *
3359776 AATTAGGCTTTTACGAGAACTCGTATCATTACCCTTGGTTCCTACGT
585 AATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
*
3359823 CGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* *
3359888 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGTCGTATATCATATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* * *
3359953 GTTGAGAGTTCTCTTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
*
3360018 GACAGCTGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
3360083 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
* * *
3360148 CCATCAACTAACAGTGGATACAAAGTCCAACAATCATAAACATCATATTAAACTTTCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
* * * **
3360213 TAAGCACCAAAGCTTCAATTTGTAGTAGAGAGAGAATCTATTTAATAAAACGTCCCGGGAAGGTG
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
* ** * *
3360278 GACCCTACCACCAATTCTTTTGATCCATTTCAAGAAGAAGGCGACAATGTCCACGCCTAACAGGA
456 GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
* * *
3360343 TTTCAGGGGAACTCATACGGTAACCCTGAGTAACAGTATTGTAAGCCTTATTACCTACGGCTGGA
521 TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGGA
*
3360408 ATTAGGCTTTTACGATAACCCATATAATTACCCTTGGTTCCTACGG
586 ATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
* * * *
3360454 CGGTAATTAAGCTTTAATCT-GAACCCAGTATATTAAACTTAGCTGTGTTAAAGAGAGAATGCTC
1 CGGTAATTAGGCTTTTAT-TGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTC
* * * *
3360518 TAGTGTTACATTAATATAAAAAATGAATGACCCGATGATTCTTTTACGCCGTATATCCTATCTTT
65 TAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTT
*
3360583 AATAGAGAGTTCTCCTCTATCTGAAAGTTACATTCCCAAGAATCCAATCGGCTGAACAACCTTAT
130 AATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTAT
*
3360648 TGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTATAGTTGGAAGAG
195 TGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAG
* *
3360713 TTATTGGTTATAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGATAAAGTAT
260 TTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTAT
* * *
3360778 ACCATCAACTAACAGTGGATTCAAAGTCCAATAATCAGAAACATCATATTAAACTTTCTCTATCA
325 ACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCA
3360843 CTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGT
390 CTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGT
* *
3360908 GGACCCCACCACCTGTTCTTTTGATCTATTTCAAGAAGAAGGTGACAATGTCTACGCCTAGCAGG
455 GGACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGG
* * *
3360973 ATTTTAGGGGAACTCATACAGTAACCCTAAGTAACAGGATTATAAGCCTTATTACCTACGTCTGG
520 ATTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGG
* * *
3361038 AATTAGGCTTTTACGAGAACCCGTATCATTACCCTTGGTTCCTACGT
585 AATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
*
3361085 CGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
1 CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
* * *
3361150 AGTGTTACATTATTATCTAAAACGAATGACTCGATGAGTCTTATACGCCGTATATCCTATCTTTA
66 AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
* *
3361215 TTAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAAAAACCTTATT
131 ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
*
3361280 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTAGAAGAGT
196 GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
3361345 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
261 TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
* *
3361410 CCATCAACTAACAGTGGATTCAAAGTCCAATAATCAGACACATCAGATTAAACTTTCTCTGTCAC
326 CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
* *
3361475 TAAACACCAATGATTCAGTTTGTAGCAGAGAGAGAATCTACC
391 TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACC
3361517 CAAGAATCCA
Statistics
Matches: 10557, Mismatches: 1024, Indels: 452
0.88 0.09 0.04
Matches are distributed among these distances:
618 8 0.00
619 9 0.00
620 26 0.00
621 29 0.00
622 35 0.00
623 39 0.00
624 184 0.02
625 628 0.06
626 56 0.01
627 325 0.03
628 974 0.09
629 709 0.07
630 1133 0.11
631 5386 0.51
632 5 0.00
633 1 0.00
634 6 0.00
635 3 0.00
636 3 0.00
637 4 0.00
638 3 0.00
639 6 0.00
640 6 0.00
641 3 0.00
642 6 0.00
643 2 0.00
644 3 0.00
645 3 0.00
647 9 0.00
648 270 0.03
649 44 0.00
650 7 0.00
651 323 0.03
652 30 0.00
653 25 0.00
654 35 0.00
655 36 0.00
656 51 0.00
657 25 0.00
658 37 0.00
659 23 0.00
660 21 0.00
661 18 0.00
662 8 0.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (631 bp):
CGGTAATTAGGCTTTTATTGGAACCCAGAATATTAAACTGAGCTGTGTTAAAGAGAGAATGCTCT
AGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTATATCCTATCTTTA
ATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCTGAACAACCTTATT
GACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTGTAGTTGGAAGAGT
TATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAAGAGGTAAAGTATA
CCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGAAACATCAGATTAAACTTTCTCTGTCAC
TAAACACCAAAGCTTCAGTTTGTAGCAGAGAGAGAATCTACCTAATAAAACGTCCCGGGAAGGTG
GACCCCACCACCTGTTCTTTTGATCCATTTCAAGAAGAAGGTGACAATGTCCACGCCTAGCAGGA
TTTCAGGGGAACTCATACGGTAACCCTAAGTAACAGGATTGTAAGCCTTATTACCTACGTCTGGA
ATTAGGCTTTTACGATAACCCATATCATTACCCTTGGTTCCTACGG
Found at i:3361723 original size:267 final size:267
Alignment explanation
Indices: 3361248--3361783 Score: 955
Period size: 267 Copynumber: 2.0 Consensus size: 267
3361238 AAGTTGCATT
*
3361248 CCCAAGAATCCAATCGGCTGAAAAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCCGAAAAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
* *
3361313 CAATCAGTGCAAGAAACTGTAGTTAGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 CAATAAGTGCAAGAAACTATAGTTAGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
*
3361378 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAATAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* * * *
3361443 TCAGACACATCAGATTAAACTTTCTCTGTCACTAAACACCAATGATTCAGTTTGTAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTATCTGTCACTAAACACCAAAGATTCAGTTTATAGCAGAGAGA
3361508 GAATCTA
261 GAATCTA
*
3361515 CCCAAGAATCCAATCGGCCGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCCGAAAAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
*
3361580 CAATAAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 CAATAAGTGCAAGAAACTATAGTTAGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
3361645 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* * *
3361710 TCCGAAACATCAGATTAAACTTTATCTTTCACTAAACACCAAAGCTTCAGTTTATAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTATCTGTCACTAAACACCAAAGATTCAGTTTATAGCAGAGAGA
3361775 GAATCTA
261 GAATCTA
3361782 CC
1 CC
3361784 TAATAAAACG
Statistics
Matches: 256, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
267 256 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (267 bp):
CCCAAGAATCCAATCGGCCGAAAAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
CAATAAGTGCAAGAAACTATAGTTAGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
TCAGAAACATCAGATTAAACTTTATCTGTCACTAAACACCAAAGATTCAGTTTATAGCAGAGAGA
GAATCTA
Found at i:3362352 original size:898 final size:898
Alignment explanation
Indices: 3360617--3362414 Score: 3182
Period size: 898 Copynumber: 2.0 Consensus size: 898
3360607 AAGTTACATT
*
3360617 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCCGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
*
3360682 CAATCAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTATAGCCGTACTAATTCCAAATCAAA
66 CAATAAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTATAGCCGTACTAATTCCAAATCAAA
*
3360747 ATAGCTTGTGACTTGACAAGAGATAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAATAA
131 ATAGCTTGTGACTTGACAAGAGATAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* * *
3360812 TCAGAAACATCATATTAAACTTTCTCTATCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTATCTATCACTAAACACCAAAGCTTCAGTTTATAGCAGAGAGA
* *
3360877 GAATCTACCTAATAAAACGTCCCGGGAAGGTGGACCCCACCACCTGTTCTTTTGATCTATTTCAA
261 GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
* *
3360942 GAAGAAGGTGACAATGTCTACGCCTAGCAGGATTTTAGGGGAACTCATACAGTAACCCTAAGTAA
326 GAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACAGTAACCCTAAGTAA
** * * *
3361007 CAGGATTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGAGAACCCGTATCATTACCC
391 CAAAATTATAAACCTTATTACCTACGTCTGGAATTAGGCTTTTACGAGAACCCATATAATTACCC
3361072 TTGGTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
456 TTGGTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
* * *
3361137 GAGAGAATGCTCTAGTGTTACATTATTATCTAAAACGAATGACTCGATGAGTCTTATACGCCGTA
521 GAGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTATACCCCGTA
*
3361202 TATCCTATCTTTATTAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCT
586 TATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCT
*
3361267 GAAAAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAGCAATCAGTGCAAGAAACTG
651 GAAAAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCACAAAGCAATCAGTGCAAGAAACTG
3361332 TAGTTAGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAA
716 TAGTTAGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAA
*
3361397 GAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAATAATCAGACACATCAGATTAAA
781 GAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGACACATCAGATTAAA
*
3361462 CTTTCTCTGTCACTAAACACCAATGATTCAGTTTGTAGCAGAGAGAGAATCTA
846 CTTTCTCTGTCACTAAACACCAAAGATTCAGTTTGTAGCAGAGAGAGAATCTA
3361515 CCCAAGAATCCAATCGGCCGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCCGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
*
3361580 CAATAAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 CAATAAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTATAGCCGTACTAATTCCAAATCAAA
*
3361645 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGATAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* *
3361710 TCCGAAACATCAGATTAAACTTTATCTTTCACTAAACACCAAAGCTTCAGTTTATAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTATCTATCACTAAACACCAAAGCTTCAGTTTATAGCAGAGAGA
3361775 GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
261 GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
* * * *
3361840 GAAGAATGTGACAATGTCCACGCCTAGTAGGATTTCAGGGGAACTTATACGGTAACCCTAAGTAA
326 GAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACAGTAACCCTAAGTAA
* * *
3361905 CAAAATTGTAAACCTTATTACCTACGTCTGGAATTAGTCTTTTACGATAACCCATATAATTACCC
391 CAAAATTATAAACCTTATTACCTACGTCTGGAATTAGGCTTTTACGAGAACCCATATAATTACCC
* * *
3361970 TTGGTTCCTATGTCGGTAATTTGGCTTTTATTGGAACCCAGTATATTAAACTGAGTTGTGTTAAA
456 TTGGTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
* *
3362035 GAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACCCCGTA
521 GAGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTATACCCCGTA
* *
3362100 TATCCTATCTTTAATAGAGAGTTTTCCTCTATCTGAAAGTTGTATTCCCAAGAATCCAATCGGCT
586 TATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCT
*
3362165 GAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCACAAAGCAATCAGTGCAAGAAACTG
651 GAAAAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCACAAAGCAATCAGTGCAAGAAACTG
* *
3362230 TAGTTGGAAGAGTTATTGGTTGTAGCTGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAA
716 TAGTTAGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAA
3362295 GAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGACACATCAGATTAAA
781 GAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGACACATCAGATTAAA
* * *
3362360 CTTTCTCTGTCACTAAATACCAAAGCTTCAGTTTGTAGTAGAGAGAGAATCTA
846 CTTTCTCTGTCACTAAACACCAAAGATTCAGTTTGTAGCAGAGAGAGAATCTA
3362413 CC
1 CC
3362415 TAATAAACCG
Statistics
Matches: 854, Mismatches: 46, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
898 854 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (898 bp):
CCCAAGAATCCAATCGGCCGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
CAATAAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTATAGCCGTACTAATTCCAAATCAAA
ATAGCTTGTGACTTGACAAGAGATAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
TCAGAAACATCAGATTAAACTTTATCTATCACTAAACACCAAAGCTTCAGTTTATAGCAGAGAGA
GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
GAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACAGTAACCCTAAGTAA
CAAAATTATAAACCTTATTACCTACGTCTGGAATTAGGCTTTTACGAGAACCCATATAATTACCC
TTGGTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
GAGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTATACCCCGTA
TATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATTCCCAAGAATCCAATCGGCT
GAAAAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCACAAAGCAATCAGTGCAAGAAACTG
TAGTTAGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAAATAGCTTGTGACTTGACAA
GAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAATCAGACACATCAGATTAAA
CTTTCTCTGTCACTAAACACCAAAGATTCAGTTTGTAGCAGAGAGAGAATCTA
Found at i:3362732 original size:631 final size:630
Alignment explanation
Indices: 3361515--3365045 Score: 6050
Period size: 631 Copynumber: 5.6 Consensus size: 630
3361505 AGAGAATCTA
*
3361515 CCCAAGAATCCAATCGGCCGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
* *
3361580 CAATAAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
3361645 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* * * *
3361710 TCCGAAACATCAGATTAAACTTTATCTTTCACTAAACACCAAAGCTTCAGTTTATAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
3361775 GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
261 GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
* * *
3361840 GAAGAATGTGACAATGTCCACGCCTAGTAGGATTTCAGGGGAACTTATACGGTAACCCTAAGTAA
326 GAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAA
** * * * * *
3361905 CAAAATTGTAAACCTTATTACCTACGTCTGGAATTAGTCTTTTACGATAACCCATATAATTACCC
391 CAGGATTGTAAGCCTTATTACCTACCTCTGGAATTAGGCTTTTACGAGAACCCATATCATTACCC
** * * *
3361970 TTGGTTCCTATGTCGGTAATTTGGCTTTTATTGGAACCCAGTATATTAAACTGAGTTGTGTTAAA
456 TTTTTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
*
3362035 GAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACCCCGTA
521 GAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
*
3362100 TATCCTATCTTTAATAGAGAGTTTTCCTCTATCTGAAAGTTGTATT
586 TATCCTATCTTTAATAGAGAGTTTT-CTCTATCTGAAAGTTGCATT
*
3362146 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCACAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
*
3362211 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCTGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
3362276 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* * *
3362341 TCAGACACATCAGATTAAACTTTCTCTGTCACTAAATACCAAAGCTTCAGTTTGTAGTAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
* * **
3362406 GAATCTACCTAATAAACCGTCGC-AGGAAGGTGGACCCCACCACCTGTAGTTTTGATCCATTTCA
261 GAATCTACCTAATAAAACGTCCCGA-GAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCA
*
3362470 AGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTTAGGGGAACTCATACGGTAACCCTAAGTA
325 AGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTA
3362535 ACAGGATTGTAAGCCTTATTACCTACCTCTGGAATTAGGCTTTTACGAGAACCCATATCATTACC
390 ACAGGATTGTAAGCCTTATTACCTACCTCTGGAATTAGGCTTTTACGAGAACCCATATCATTACC
* * * *
3362600 CTTTTTTCATACGTTGGTAATTAGGCTTTTATTAGAACCCAGTATATTAAATTGAGCTGTGTTAA
455 CTTTTTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAA
* *
3362665 AGAGTGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTATTTTACGCCGT
520 AGAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGT
*
3362730 ATATCCTATCTTTAATAGAGAGTTCTACTCTATCTGAAAGTTGCATT
585 ATATCCTATCTTTAATAGAGAGTT-TTCTCTATCTGAAAGTTGCATT
3362777 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
3362842 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
*
3362907 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCGTCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* * *
3362972 TCAGACACATCAGATTAAACTTTCTCTGTCACTAAAGACCAAAGCTTCAGTTTATAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
* *
3363037 GAATCTACCTAATAAAATGTCCCGTGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
261 GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
* * * *
3363102 GACGAAGGTGACATTGTCCACGCCTAGCAGGATTTTAGGGGAACTAATACGGTAACCCTAAGTAA
326 GAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAA
* * * * *
3363167 CATGATTATAAGCCTTATTACCTACGTCTGGAATTAGGCTTTTACGATAACCCATATAATTACCC
391 CAGGATTGTAAGCCTTATTACCTACCTCTGGAATTAGGCTTTTACGAGAACCCATATCATTACCC
* *
3363232 TTTTTTCATACGTCGGTAATTAGGCTTTTATTGGAACCCAATATATTAAACTGAGCTGTGTTAAA
456 TTTTTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
*
3363297 GAGAGAATGCTCTAGTGTTACATTAATATATAAAACGAATGACTCGATGAGTCTTTTACGCCGTA
521 GAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
*
3363362 TATCCTATCTTTAATAGAGAGTTCTCCTCTATCTGAAAGTTGCATT
586 TATCCTATCTTTAATAGAGAGTT-TTCTCTATCTGAAAGTTGCATT
3363408 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
3363473 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
*
3363538 ATAGCTTGTGACTTGACAATAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
*
3363603 TCAGAAACATCAGATTAAACTTTCTCTATCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
*
3363668 GAATCTACCTAATAAAACGTCCCGAGAAGGTAGACCCCACCACCTGTTCTTTTGATCCATTTCAA
261 GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
*
3363733 GAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACAGTAACCCTAAGTAA
326 GAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAA
* * *
3363798 CAGGATTGTAAGCCTTGTTACCTACATCTGGAATTAGGCTTTTACGAGAACCCGTATCATTACCC
391 CAGGATTGTAAGCCTTATTACCTACCTCTGGAATTAGGCTTTTACGAGAACCCATATCATTACCC
** *
3363863 TTCGTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACGGAGCTGTGTTAAA
456 TTTTTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
* *
3363928 GAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGTCTCGATGAGTCTTTTACGCCGTC
521 GAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
3363993 TATCCTATCTTTAATAGAGAGTTCTTCTCTATCTGAAAGTTGCATT
586 TATCCTATCTTTAATAGAGAGTT-TTCTCTATCTGAAAGTTGCATT
*
3364039 CCCAAGAATCCAATCGGCTAAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
* * *
3364104 TAATCAGTGCAAGAAACGGTAGTTGGAAGAGTTATTGGTTGTAGCTGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
*
3364169 ATAGCTTATGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* * *
3364234 TCAGACACATCAGATTAAAC--TCTCTGTCACTAAAGACCAAAGCTTCAGTTTGTAGTAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
* * * *
3364297 GAATCTACCTAATAAAACGTCCTGGGAAGGTAGACCGCACCACCTGTTCTTTTGATCCATTTCAA
261 GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
* * *
3364362 GAAGAATGTGACAATGTCCACGCCTAGTAGGATTTTAGGGGAACTCATACGGTAACCCTAAGTAA
326 GAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAA
* *
3364427 AAGGATTGTAAGCTTTATTACCTACCTCTGGAATTAGGCTTTTACGAGAACCCATATCATTACCC
391 CAGGATTGTAAGCCTTATTACCTACCTCTGGAATTAGGCTTTTACGAGAACCCATATCATTACCC
3364492 TTTTTTCCTACGTCGGT-ATCTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAA
456 TTTTTTCCTACGTCGGTAAT-TAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAA
*
3364556 AGAGAAAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGT
520 AGAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGT
3364621 ATATCCTATCTTTAATAGAGAG--TTCTCTATCTGAAAGTTGCATT
585 ATATCCTATCTTTAATAGAGAGTTTTCTCTATCTGAAAGTTGCATT
3364665 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
1 CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
* *
3364730 CAATCAGTGCAAGAAACTATAGTTGGAAGAGTTATTGGCTGTAGCCGTACTAATTCCAAATCAAA
66 CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
3364795 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
131 ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
* * **
3364860 TAAGAAACAGCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAATAGAGAGA
196 TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
*
3364925 GAATCTACCTAATAAAACATCCC-AGGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCA
261 GAATCTACCTAATAAAACGTCCCGA-GAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCA
* * *
3364989 AGAAGAAGGTGACAATGTTCACGCCTAGTAGGATTTCAGGGGAACTCATACGTTAAC
325 AGAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAAC
3365046 AATTGTTAAT
Statistics
Matches: 2745, Mismatches: 148, Indels: 17
0.94 0.05 0.01
Matches are distributed among these distances:
626 227 0.08
628 154 0.06
629 365 0.13
630 1 0.00
631 1997 0.73
632 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (630 bp):
CCCAAGAATCCAATCGGCTGAACAACCTTATTGACAGCAGAAACCCAACTCGAGATGGCTCAAAG
CAATCAGTGCAAGAAACTGTAGTTGGAAGAGTTATTGGTTGTAGCCGTACTAATTCCAAATCAAA
ATAGCTTGTGACTTGACAAGAGGTAAAGTATACCATCAACTAACAGTGGATTCAAAGTCCAACAA
TCAGAAACATCAGATTAAACTTTCTCTGTCACTAAACACCAAAGCTTCAGTTTGTAGCAGAGAGA
GAATCTACCTAATAAAACGTCCCGAGAAGGTGGACCCCACCACCTGTTCTTTTGATCCATTTCAA
GAAGAAGGTGACAATGTCCACGCCTAGCAGGATTTCAGGGGAACTCATACGGTAACCCTAAGTAA
CAGGATTGTAAGCCTTATTACCTACCTCTGGAATTAGGCTTTTACGAGAACCCATATCATTACCC
TTTTTTCCTACGTCGGTAATTAGGCTTTTATTGGAACCCAGTATATTAAACTGAGCTGTGTTAAA
GAGAGAATGCTCTAGTGTTACATTAATATATAAAATGAATGACTCGATGAGTCTTTTACGCCGTA
TATCCTATCTTTAATAGAGAGTTTTCTCTATCTGAAAGTTGCATT
Found at i:3367029 original size:11 final size:11
Alignment explanation
Indices: 3367013--3367037 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3367003 GAGGCCCAAT
3367013 CCATTTAAAAC
1 CCATTTAAAAC
3367024 CCATTTAAAAC
1 CCATTTAAAAC
3367035 CCA
1 CCA
3367038 AATCAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (11 bp):
CCATTTAAAAC
Found at i:3367119 original size:17 final size:17
Alignment explanation
Indices: 3367097--3367135 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
3367087 TGAATCAAAT
3367097 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
3367114 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
3367131 -AATTA
1 TAATTA
3367136 ATTGTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Found at i:3368016 original size:38 final size:37
Alignment explanation
Indices: 3367974--3368272 Score: 187
Period size: 38 Copynumber: 8.2 Consensus size: 37
3367964 ATTTTTAAAC
* *
3367974 TATATTATATTTTTAAAAAAGATTTCAAAACTATACA-
1 TATA-TATATTTTTAAAAAAGATTTTAAAACTATATAT
* * *
3368011 T-TATATAGTTTTCAAAATG-TTTTAAAA--ATATA-
1 TATATATATTTTTAAAAAAGATTTTAAAACTATATAT
* * *
3368043 TATA-A-GTTTTCAAAAAATATTTCTAAAACTATATAT
1 TATATATATTTTTAAAAAAGATTT-TAAAACTATATAT
* *
3368079 TATATA-ATTTTTTAAAAATGTTTTTTAAAACTATATAT
1 TATATATA-TTTTTAAAAAAG-ATTTTAAAACTATATAT
* *
3368117 TATATA-ATTTTTCAAAAATGTTTTTAAAACTATATAT
1 TATATATATTTTT-AAAAAAGATTTTAAAACTATATAT
* * * *
3368154 TATATA-ATTTTTTCAAAAATATTTTTAAAACGATGTAT
1 TATATATA-TTTTTAAAAAAGA-TTTTAAAACTATATAT
* *
3368192 TATATA-ATTTCTCAAAAATG-TTTTAAAAAACTATATAT
1 TATATATATTT-TTAAAAAAGATTTT--AAAACTATATAT
* ** *
3368230 TATATA-AGTTTTCAAAATTG-TTTTAAAAACTATATAA
1 TATATATA-TTTTTAAAAAAGATTTT-AAAACTATATAT
3368267 TATATA
1 TATATA
3368273 AATATTTTCA
Statistics
Matches: 216, Mismatches: 30, Indels: 32
0.78 0.11 0.12
Matches are distributed among these distances:
31 7 0.03
32 9 0.04
33 7 0.03
34 7 0.03
35 18 0.08
36 10 0.05
37 56 0.26
38 96 0.44
39 6 0.03
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (37 bp):
TATATATATTTTTAAAAAAGATTTTAAAACTATATAT
Found at i:3368151 original size:75 final size:74
Alignment explanation
Indices: 3367982--3368285 Score: 320
Period size: 75 Copynumber: 4.1 Consensus size: 74
3367972 ACTATATTAT
* * * * * *
3367982 ATTTTT-AAAAAAGATTTCAAAACTATACATTATAT-A-GTTTTCAAAATG-TTTT-AAA--A-A
1 ATTTTTCAAAAATGTTTTTAAAACTATATATTATATAATTTTTTAAAAATGTTTTTAAAACTATA
3368039 TA-TATATA
66 TATTATATA
* * *
3368047 AGTTTTCAAAAAATATTTCTAAAACTATATATTATATAATTTTTTAAAAATGTTTTTTAAAACTA
1 ATTTTTC-AAAAATGTTTTTAAAACTATATATTATATAATTTTTTAAAAATG-TTTTTAAAACTA
3368112 TATATTATATA
64 TATATTATATA
* *
3368123 ATTTTTCAAAAATGTTTTTAAAACTATATATTATATAATTTTTTCAAAAATATTTTTAAAACGAT
1 ATTTTTCAAAAATGTTTTTAAAACTATATATTATATAATTTTTT-AAAAATGTTTTTAAAACTAT
*
3368188 GTATTATATA
65 ATATTATATA
* * * * * *
3368198 ATTTCTCAAAAATGTTTTAAAAAACTATATATTATATAAGTTTTCAAAATTGTTTTAAAAACTAT
1 ATTTTTCAAAAATGTTTT-TAAAACTATATATTATATAATTTTTTAAAAATGTTTTTAAAACTAT
*
3368263 ATAATATATAA
65 ATATTATAT-A
3368274 ATATTTTCAAAA
1 AT-TTTTCAAAA
3368286 CTATATATTA
Statistics
Matches: 198, Mismatches: 26, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
65 5 0.03
67 23 0.12
68 1 0.01
69 10 0.05
71 4 0.02
72 3 0.02
74 1 0.01
75 99 0.50
76 44 0.22
77 8 0.04
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.45
Consensus pattern (74 bp):
ATTTTTCAAAAATGTTTTTAAAACTATATATTATATAATTTTTTAAAAATGTTTTTAAAACTATA
TATTATATA
Found at i:3368172 original size:113 final size:110
Alignment explanation
Indices: 3367974--3368337 Score: 391
Period size: 113 Copynumber: 3.4 Consensus size: 110
3367964 ATTTTTAAAC
* * * * *
3367974 TATATTATATTTTTAAAAAAG-ATTTCAAAACTATACATTATAT-AGTTTTC-AAAATG-TTTTA
1 TATATAAT-TTTTTAAAAATGTTTTTAAAAACTATATATTATATAAGTTTTCAAAAATGTTTTTA
*
3368035 AAA--ATATATATA-AGTTTTCAAAAAATATTTCTAAAACTATATAT
65 AAACTATATATATATAATTTTC-AAAAATATTTCTAAAACTATATAT
* *
3368079 TATATAATTTTTTAAAAATGTTTTTTAAAACTATATATTATATAATTTTTCAAAAATGTTTTTAA
1 TATATAATTTTTTAAAAATGTTTTTAAAAACTATATATTATATAAGTTTTCAAAAATGTTTTTAA
* * *
3368144 AACTATATATTATATAATTTTTTCAAAAATATTTTTAAAACGATGTAT
66 AACTATATA-TATATAA--TTTTCAAAAATATTTCTAAAACTATATAT
* * * * *
3368192 TATATAATTTCTCAAAAATGTTTTAAAAAACTATATATTATATAAGTTTTCAAAATTGTTTTAAA
1 TATATAATTTTTTAAAAATGTTTTTAAAAACTATATATTATATAAGTTTTCAAAAATGTTTTTAA
*
3368257 AACTATATA-ATAT-A---T-AAATAT-TTTC-AAAACTATATAT
66 AACTATATATATATAATTTTCAAAAATATTTCTAAAACTATATAT
* * *
3368294 TATAT-ATATTTTAAAAATGTTTTCAAAAACTATATAATATATAA
1 TATATAATTTTTTAAAAATGTTTTTAAAAACTATATATTATATAA
3368338 AATTTTGAAA
Statistics
Matches: 223, Mismatches: 26, Indels: 24
0.82 0.10 0.09
Matches are distributed among these distances:
101 34 0.15
102 15 0.07
103 3 0.01
104 16 0.07
105 27 0.12
106 6 0.03
107 6 0.03
108 8 0.04
110 6 0.03
111 8 0.04
112 1 0.00
113 88 0.39
114 5 0.02
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (110 bp):
TATATAATTTTTTAAAAATGTTTTTAAAAACTATATATTATATAAGTTTTCAAAAATGTTTTTAA
AACTATATATATATAATTTTCAAAAATATTTCTAAAACTATATAT
Found at i:3368289 original size:64 final size:63
Alignment explanation
Indices: 3368218--3368348 Score: 203
Period size: 64 Copynumber: 2.1 Consensus size: 63
3368208 AATGTTTTAA
*
3368218 AAAACTATATATTATATA-AGTTTTCAAAATTGTTTT-AAAAACTATATAATATATAAATATTTT
1 AAAACTATATATTATATATA-TTTT-AAAAATGTTTTCAAAAACTATATAATATATAAA-ATTTT
3368281 C
63 C
*
3368282 AAAACTATATATTATATATATTTTAAAAATGTTTTCAAAAACTATATAATATATAAAATTTTG
1 AAAACTATATATTATATATATTTTAAAAATGTTTTCAAAAACTATATAATATATAAAATTTTC
3368345 AAAA
1 AAAA
3368349 TCATTTTCTG
Statistics
Matches: 63, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
63 19 0.30
64 43 0.68
65 1 0.02
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (63 bp):
AAAACTATATATTATATATATTTTAAAAATGTTTTCAAAAACTATATAATATATAAAATTTTC
Found at i:3368297 original size:25 final size:27
Alignment explanation
Indices: 3368250--3368310 Score: 90
Period size: 25 Copynumber: 2.3 Consensus size: 27
3368240 TTCAAAATTG
3368250 TTTTAAAAACTATATAATATATAAATA
1 TTTTAAAAACTATATAATATATAAATA
* *
3368277 TTTTCAAAACTATAT-AT-TATATATA
1 TTTTAAAAACTATATAATATATAAATA
3368302 TTTTAAAAA
1 TTTTAAAAA
3368311 TGTTTTCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 15 0.48
26 2 0.06
27 14 0.45
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (27 bp):
TTTTAAAAACTATATAATATATAAATA
Found at i:3368302 original size:75 final size:74
Alignment explanation
Indices: 3368001--3368322 Score: 278
Period size: 75 Copynumber: 4.4 Consensus size: 74
3367991 AAAGATTTCA
* *
3368001 AAACTATACATTATAT-A-GTTTTC-AAAATG-TTTT-AAA--A-ATA-TATATAAGTTTTCAAA
1 AAACTATATATTATATAATGTTTTCAAAAATGTTTTTAAAACTATATATTATATAATTTTTC-AA
3368057 AAATATT-TCT
65 AAATATTAT-T
*
3368067 AAAACTATATATTATATAAT-TTTTTAAAAATGTTTTTTAAAACTATATATTATATAATTTTTCA
1 -AAACTATATATTATATAATGTTTTCAAAAATG-TTTTTAAAACTATATATTATATAATTTTTCA
* *
3368131 AAAATGTTTTT
64 AAAATATTATT
* * * * *
3368142 AAAACTATATATTATATAATTTTTTCAAAAATATTTTTAAAACGATGTATTATATAATTTCTCAA
1 -AAACTATATATTATATAATGTTTTCAAAAATGTTTTTAAAACTATATATTATATAATTTTTCAA
*
3368207 AAATGTT-TT
65 AAATATTATT
* * *
3368216 AAAAAACTATATATTATATAA-GTTTTCAAAATTGTTTTAAAAACTATATAATATATAAATATTT
1 ---AAACTATATATTATATAATGTTTTCAAAAATGTTTTTAAAACTATATATTATAT-AAT-TTT
*
3368280 TCAAAACTATATATT
61 TCAAAAATAT-TATT
* * *
3368295 ATA-TATATTTTA-AAAATGTTTTCAAAAA
1 AAACTATATATTATATAATGTTTTCAAAAA
3368323 CTATATAATA
Statistics
Matches: 213, Mismatches: 23, Indels: 30
0.80 0.09 0.11
Matches are distributed among these distances:
67 15 0.07
68 5 0.02
69 6 0.03
71 4 0.02
72 3 0.01
74 6 0.03
75 114 0.54
76 47 0.22
77 10 0.05
78 1 0.00
79 2 0.01
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (74 bp):
AAACTATATATTATATAATGTTTTCAAAAATGTTTTTAAAACTATATATTATATAATTTTTCAAA
AATATTATT
Found at i:3368375 original size:40 final size:37
Alignment explanation
Indices: 3368272--3368375 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 37
3368262 TATAATATAT
*
3368272 AAATATTTTC-AAAACTATATATTATATATATTTTAA
1 AAATATTTTCAAAAACTATATATTATATAAATTTTAA
* * *
3368308 AAATGTTTTCAAAAACTATATAATATATAAAATTTTGA
1 AAATATTTTCAAAAACTATATATTATAT-AAATTTTAA
* *
3368346 AAATCATTTTCTGAAAATTATATATTATAT
1 AAAT-ATTTTC-AAAAACTATATATTATAT
3368376 TTCGTCAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
36 9 0.16
37 16 0.29
38 11 0.20
39 5 0.09
40 15 0.27
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (37 bp):
AAATATTTTCAAAAACTATATATTATATAAATTTTAA
Found at i:3377923 original size:5 final size:5
Alignment explanation
Indices: 3377915--3377952 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
3377905 TAATTCATTA
3377915 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
3377953 GATACAAGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:3379534 original size:6 final size:6
Alignment explanation
Indices: 3379523--3379550 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
3379513 CTTAATTGCG
3379523 AAAATT AAAATT AAAATT AAAATT AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAA
3379551 AACGATTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:3382001 original size:120 final size:120
Alignment explanation
Indices: 3381632--3382032 Score: 523
Period size: 121 Copynumber: 3.3 Consensus size: 120
3381622 GACACTCCTT
* * * * * *
3381632 CCTTGAGTTGGTTATCCTTCATCGTGAAGTTGAAATCCAATCTAGAGATGGATATTGCTTGTGGG
1 CCTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAA-GT--A-TTGCATGTTGCTTGTGGG
* *
3381697 CACGATATCCTTCGTCGTGAAGTTGAAATCTTGGATGGCCCATTCATTGTGAAGTTGAG
62 CACGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAG
* * ** * **
3381756 CCTTAAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTATGCAC
1 CCTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAAGTATTGCA-TGTTGCTTGTGGGCAC
* *
3381821 GATATCCTTCGTCATGAAGTTGAAATCGTGGATGGCCCCTTCGTTGTGAAGTTGAG
65 GATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAG
* * *
3381877 CCTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGTATTGTATGTTGGTTGTGGGCACG
1 CCTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAAGTATTGCATGTTGCTTGTGGGCACG
* * * *
3381942 ATATCCTCCATCGTGGAGTTGAAATCGTGGATGACCCATTCGTTGTGAAGTTGAG
66 ATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAG
* *
3381997 CCTTGAATTGGATATCATTCATCGTGAAGTTAAAAT
1 CCTTGAATTGGATATCCTTCATCGTGAAGTTGAAAT
3382033 AGTGGATGGC
Statistics
Matches: 242, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
120 98 0.40
121 108 0.45
124 36 0.15
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (120 bp):
CCTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAAGTATTGCATGTTGCTTGTGGGCACG
ATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAG
Found at i:3382053 original size:66 final size:66
Alignment explanation
Indices: 3381941--3382098 Score: 226
Period size: 66 Copynumber: 2.4 Consensus size: 66
3381931 TTGTGGGCAC
* * * * *
3381941 GATATCCTCCATCGTGGAGTTGAAATCGTGGATGACCCATTCGTTGTGAAGTTGAGCCTTGAATT
1 GATATCCTTCATCGTGAAGTTAAAATAGTGGATGACCCATTCGTTGTAAAGTTGAGCCTTGAATT
3382006 G
66 G
* * * *
3382007 GATATCATTCATCGTGAAGTTAAAATAGTGGATGGCCCCTTTGTTGTAAAGTTGAGCCTTGAATT
1 GATATCCTTCATCGTGAAGTTAAAATAGTGGATGACCCATTCGTTGTAAAGTTGAGCCTTGAATT
3382072 G
66 G
*
3382073 GATATCCTTCGTCGTGAAGTTAAAAT
1 GATATCCTTCATCGTGAAGTTAAAAT
3382099 CCAAGTATTG
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 81 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.34
Consensus pattern (66 bp):
GATATCCTTCATCGTGAAGTTAAAATAGTGGATGACCCATTCGTTGTAAAGTTGAGCCTTGAATT
G
Found at i:3382061 original size:186 final size:186
Alignment explanation
Indices: 3381821--3382219 Score: 591
Period size: 186 Copynumber: 2.1 Consensus size: 186
3381811 TTGTATGCAC
* * * *
3381821 GATATCCTTCGTCATGAAGTTGAAATCGTGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGAATT
1 GATATCATTCATCATGAAGTTGAAATAGTGGATGGCCCCTTCGTTGTAAAGTTGAGCCTTGAATT
* ** * * *
3381886 GGATATCCTTCGTCGTGAAGTTGAAATCCAAGTATTGTATGTTGGTTGTGGGCACGATATCCTCC
66 GGATATCCTTCGTCGTGAAGTTAAAATCCAAGTATTGTATGTTACTGGTGGACACAATATCCTCC
* * ** *
3381951 ATCGTGGAGTTGAAATCGTGGATGACCCATTCGTTGTGAAGTTGAGCCTTGAATTG
131 ATCATGAAGTCAAAATCATGGATGACCCATTCGTTGTGAAGTTGAGCCTTGAATTG
* * *
3382007 GATATCATTCATCGTGAAGTTAAAATAGTGGATGGCCCCTTTGTTGTAAAGTTGAGCCTTGAATT
1 GATATCATTCATCATGAAGTTGAAATAGTGGATGGCCCCTTCGTTGTAAAGTTGAGCCTTGAATT
* *
3382072 GGATATCCTTCGTCGTGAAGTTAAAATCCAAGTATTGTATGTTACTGGTGGATACAATATCCTTC
66 GGATATCCTTCGTCGTGAAGTTAAAATCCAAGTATTGTATGTTACTGGTGGACACAATATCCTCC
* * *
3382137 GTCATGAAGTCAAAATCATGGATGTCCCCTTCGTTGTGAAGTTGAGCCTTGAATTG
131 ATCATGAAGTCAAAATCATGGATGACCCATTCGTTGTGAAGTTGAGCCTTGAATTG
3382193 GATATCATTCATCATGAAGTTGAAATA
1 GATATCATTCATCATGAAGTTGAAATA
3382220 CAATCTGGTT
Statistics
Matches: 188, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
186 188 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (186 bp):
GATATCATTCATCATGAAGTTGAAATAGTGGATGGCCCCTTCGTTGTAAAGTTGAGCCTTGAATT
GGATATCCTTCGTCGTGAAGTTAAAATCCAAGTATTGTATGTTACTGGTGGACACAATATCCTCC
ATCATGAAGTCAAAATCATGGATGACCCATTCGTTGTGAAGTTGAGCCTTGAATTG
Found at i:3382241 original size:45 final size:45
Alignment explanation
Indices: 3382185--3382275 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
3382175 AAGTTGAGCC
*
3382185 TTGAATTGGATATCATTCATCATGAAGTTGAAATACAATCTGGTT
1 TTGAATTGGATATCATTCATCATGAAGTTGAAATACAATCTAGTT
* * * ** *
3382230 TTGAGTTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTAGTT
1 TTGAATTGGATATCATTCATCATGAAGTTGAAATACAATCTAGTT
3382275 T
1 T
3382276 CATCGAATTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.40
Consensus pattern (45 bp):
TTGAATTGGATATCATTCATCATGAAGTTGAAATACAATCTAGTT
Found at i:3383263 original size:23 final size:23
Alignment explanation
Indices: 3383237--3383295 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
3383227 ACCCTAAACA
3383237 TTTTCTCTTT-TTTTGGTC-TTTTC
1 TTTTCT-TTTCTTTT-GTCTTTTTC
*
3383260 TTTTCTTTTCTTTTTTCTTTTTC
1 TTTTCTTTTCTTTTGTCTTTTTC
*
3383283 TTTTTTTCTTCTT
1 TTTTCTT-TTCTT
3383296 CGACTTAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 5 0.16
23 21 0.68
24 5 0.16
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (23 bp):
TTTTCTTTTCTTTTGTCTTTTTC
Found at i:3383277 original size:12 final size:13
Alignment explanation
Indices: 3383260--3383288 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
3383250 TGGTCTTTTC
3383260 TTTTC-TTTTCTT
1 TTTTCTTTTTCTT
3383272 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
3383285 TTTT
1 TTTT
3383289 TCTTCTTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:3383277 original size:17 final size:16
Alignment explanation
Indices: 3383255--3383295 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
3383245 TTTTTTGGTC
3383255 TTTTCTTTTCTTTTCTT
1 TTTTCTTTTCTTTT-TT
3383272 TTTTCTTTTTCTTTTTT
1 TTTTC-TTTTCTTTTTT
*
3383289 TCTTCTT
1 TTTTCTT
3383296 CGACTTAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 11 0.50
18 9 0.41
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTCTTTTCTTTTTT
Found at i:3390359 original size:16 final size:16
Alignment explanation
Indices: 3390338--3390370 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
3390328 TGACGAGATG
3390338 CCTTATGTACTTGCTC
1 CCTTATGTACTTGCTC
3390354 CCTTATGTACTTGCTC
1 CCTTATGTACTTGCTC
3390370 C
1 C
3390371 AGGAAATCGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.33, G:0.12, T:0.42
Consensus pattern (16 bp):
CCTTATGTACTTGCTC
Found at i:3391627 original size:11 final size:11
Alignment explanation
Indices: 3391611--3391639 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
3391601 TTGTTCGAAT
3391611 AACTCCACCAC
1 AACTCCACCAC
3391622 AACTCCACCAC
1 AACTCCACCAC
3391633 AACTCCA
1 AACTCCA
3391640 TCAATGTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.52, G:0.00, T:0.10
Consensus pattern (11 bp):
AACTCCACCAC
Found at i:3393259 original size:18 final size:18
Alignment explanation
Indices: 3393236--3393279 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
3393226 ATCTAAGTTC
3393236 AAACATCCATATAATCC-A
1 AAACATCCA-ATAATCCAA
3393254 AAACAT--AATAATCCAA
1 AAACATCCAATAATCCAA
3393270 AAACATCCAA
1 AAACATCCAA
3393280 AATGTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 8 0.35
18 8 0.35
ACGTcount: A:0.57, C:0.25, G:0.00, T:0.18
Consensus pattern (18 bp):
AAACATCCAATAATCCAA
Found at i:3395018 original size:20 final size:21
Alignment explanation
Indices: 3394979--3395018 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
3394969 TAAACTTTAA
* *
3394979 GATCATCAATTTTCTTTTGAT
1 GATCATCAATTTACTCTTGAT
3395000 GATCATC-ATTTACTCTTGA
1 GATCATCAATTTACTCTTGA
3395019 AAGTAAGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.47
Consensus pattern (21 bp):
GATCATCAATTTACTCTTGAT
Found at i:3404589 original size:128 final size:128
Alignment explanation
Indices: 3404361--3405095 Score: 1335
Period size: 128 Copynumber: 5.7 Consensus size: 128
3404351 ACTATTCACA
* *
3404361 TGAAGGCGCGTTCCCGGGGGCTCACCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* *
3404426 TTATGTCACTCATGTCCCTCGGGGATACTATTCATATCAGTACCTATTATTTCTCAAGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
*
3404489 TGAAGGCGCGTTCCTGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* * *
3404554 TTATGTCACACATGTCCCTCGGGAACACTATTCATATCAGTACCTATTATTTCTCAAGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
*
3404617 TGAAGGAGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
*
3404682 TTATGTCACTCATGTCCCTCAGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
*
3404745 TGAAGGCGCGTTCCCGGGGGCGTGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
*
3404810 TTATGTCACTCATATCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
*
3404873 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTTAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
3404938 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
*
3405001 TGAAGGCACGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
*
3405066 TTATGTCACTCATGTCCCTCGGGGATACTA
66 TTATGTCACTCATGTCCCTCGGGGACACTA
3405096 AATGGATTGT
Statistics
Matches: 585, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
128 585 1.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.33
Consensus pattern (128 bp):
TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
Found at i:3405530 original size:34 final size:34
Alignment explanation
Indices: 3405491--3405597 Score: 151
Period size: 34 Copynumber: 3.1 Consensus size: 34
3405481 TAAGTTGAAA
* *
3405491 TTTAATGTTAAATTTTGAATACTATAATTTATAT
1 TTTAATTTTAAATTTTGAATAATATAATTTATAT
* * *
3405525 TTTAATTTTAAATTTCGAATAATATTATTTTTAT
1 TTTAATTTTAAATTTTGAATAATATAATTTATAT
* *
3405559 TTTTATTTTAAATTTTGAATAATATAATTTGTAT
1 TTTAATTTTAAATTTTGAATAATATAATTTATAT
3405593 TTTAA
1 TTTAA
3405598 AAACATTTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 63 1.00
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (34 bp):
TTTAATTTTAAATTTTGAATAATATAATTTATAT
Found at i:3406171 original size:21 final size:21
Alignment explanation
Indices: 3406118--3406232 Score: 153
Period size: 21 Copynumber: 5.5 Consensus size: 21
3406108 TATGGTATAA
*
3406118 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
* *
3406139 AA-CATGATGGGCTAGGAATGT
1 AACCCTG-CGGGCTAGGAATGT
*
3406160 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
3406181 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
3406202 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
3406223 AACCCTGCGG
1 AACCCTGCGG
3406233 AGATGGCATA
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.07
21 70 0.85
22 6 0.07
ACGTcount: A:0.23, C:0.24, G:0.34, T:0.19
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:3406226 original size:42 final size:42
Alignment explanation
Indices: 3406118--3406226 Score: 173
Period size: 42 Copynumber: 2.6 Consensus size: 42
3406108 TATGGTATAA
* * * *
3406118 AACCCTGCGGGCTAGGCATGTAACATGATGGGCTAGGAATGT
1 AACCCTGCGGGCTCGGAATGTAACCTGACGGGCTAGGAATGT
*
3406160 AACCCTGCGGGCTCGGAATGTAACCTGGCGGGCTAGGAATGT
1 AACCCTGCGGGCTCGGAATGTAACCTGACGGGCTAGGAATGT
3406202 AACCCTGCGGGCTCGGAATGTAACC
1 AACCCTGCGGGCTCGGAATGTAACC
3406227 CTGCGGAGAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.24, C:0.24, G:0.33, T:0.19
Consensus pattern (42 bp):
AACCCTGCGGGCTCGGAATGTAACCTGACGGGCTAGGAATGT
Found at i:3406262 original size:21 final size:21
Alignment explanation
Indices: 3406236--3406283 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
3406226 CCTGCGGAGA
*
3406236 TGGCATATGAACTGGTGGGCT
1 TGGCATATGAACTGGAGGGCT
*
3406257 TGGCATATGAAGTGGAGGGCT
1 TGGCATATGAACTGGAGGGCT
*
3406278 GGGCAT
1 TGGCAT
3406284 GTGCCCCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.42, T:0.25
Consensus pattern (21 bp):
TGGCATATGAACTGGAGGGCT
Found at i:3408017 original size:36 final size:32
Alignment explanation
Indices: 3407972--3408041 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 32
3407962 TTAATAAAGA
* *
3407972 AATAATATTTACATAAATATATTAATATAAAATAT
1 AATAATATTTA-A-AAAAATACTAATATAAAA-AT
3408007 AATAACTATTTAAAAAAATACTAATATAAAAAT
1 AATAA-TATTTAAAAAAATACTAATATAAAAAT
3408040 AA
1 AA
3408042 ATTTCTTACC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 4 0.12
34 16 0.50
35 6 0.19
36 6 0.19
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.34
Consensus pattern (32 bp):
AATAATATTTAAAAAAATACTAATATAAAAAT
Found at i:3408036 original size:16 final size:18
Alignment explanation
Indices: 3407994--3408041 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
3407984 ATAAATATAT
3407994 TAATATAAAATATAATAAC
1 TAATATAAAA-ATAATAAC
*
3408013 T-ATTTAAAAA-AAT-AC
1 TAATATAAAAATAATAAC
3408028 TAATATAAAAATAA
1 TAATATAAAAATAA
3408042 ATTTCTTACC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 3 0.12
16 11 0.44
17 3 0.12
18 7 0.28
19 1 0.04
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
TAATATAAAAATAATAAC
Found at i:3408718 original size:9 final size:8
Alignment explanation
Indices: 3408672--3408721 Score: 55
Period size: 8 Copynumber: 6.0 Consensus size: 8
3408662 GGTTAGCATT
*
3408672 TTATTTTA
1 TTATATTA
* *
3408680 TTTTATTT
1 TTATATTA
3408688 TTATATTA
1 TTATATTA
3408696 TTATTATTA
1 TTA-TATTA
3408705 TTATATTA
1 TTATATTA
3408713 TATATATTA
1 T-TATATTA
3408722 AATAATTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
8 20 0.57
9 15 0.43
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (8 bp):
TTATATTA
Found at i:3408721 original size:17 final size:17
Alignment explanation
Indices: 3408672--3408713 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
3408662 GGTTAGCATT
* *
3408672 TTATTTTATT-TTATTT
1 TTATATTATTATTATTA
3408688 TTATATTATTATTATTA
1 TTATATTATTATTATTA
3408705 TTATATTAT
1 TTATATTAT
3408714 ATATATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATATTATTATTATTA
Found at i:3408928 original size:24 final size:24
Alignment explanation
Indices: 3408881--3408928 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
3408871 GCCTACTGCA
* *
3408881 CTGCACTGCCGCGCCGCCGCTGTC
1 CTGCACTGCCGCACCGCCACTGTC
*
3408905 CTGCACTGCCGCACCGCCATTGTC
1 CTGCACTGCCGCACCGCCACTGTC
3408929 TGCTGTTATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.08, C:0.48, G:0.25, T:0.19
Consensus pattern (24 bp):
CTGCACTGCCGCACCGCCACTGTC
Found at i:3411104 original size:21 final size:22
Alignment explanation
Indices: 3411078--3411118 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
3411068 CCAAGACATG
3411078 GAGTATCGGTAC-TCCTTTAAT
1 GAGTATCGGTACTTCCTTTAAT
*
3411099 GAGTATTGGTACTTCCTTTA
1 GAGTATCGGTACTTCCTTTA
3411119 TAATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (22 bp):
GAGTATCGGTACTTCCTTTAAT
Found at i:3411587 original size:7 final size:7
Alignment explanation
Indices: 3411577--3411605 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
3411567 AATAGTACCC
3411577 GAACAGT
1 GAACAGT
3411584 GAACAGT
1 GAACAGT
3411591 GAACAGT
1 GAACAGT
3411598 GAACAGT
1 GAACAGT
3411605 G
1 G
3411606 GGGGAATCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.31, T:0.14
Consensus pattern (7 bp):
GAACAGT
Found at i:3413795 original size:15 final size:15
Alignment explanation
Indices: 3413777--3413860 Score: 84
Period size: 15 Copynumber: 5.7 Consensus size: 15
3413767 ATTTGGTTTT
3413777 TTATTATTATATTTA
1 TTATTATTATATTTA
* *
3413792 TTATTTTTATTTTTA
1 TTATTATTATATTTA
* *
3413807 TTACTATTATTTTTA
1 TTATTATTATATTTA
*
3413822 TTATTAATATTATTT-
1 TTATTATTA-TATTTA
3413837 TTATTATTA-ATATTA
1 TTATTATTATAT-TTA
3413852 TTATT-TTAT
1 TTATTATTAT
3413861 TACATATACA
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
13 2 0.04
14 5 0.09
15 46 0.81
16 4 0.07
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATTATTATATTTA
Found at i:3413800 original size:21 final size:20
Alignment explanation
Indices: 3413774--3413862 Score: 105
Period size: 21 Copynumber: 4.5 Consensus size: 20
3413764 TACATTTGGT
3413774 TTTTTATTATTATATTTATTA
1 TTTTTATTATTA-ATTTATTA
*
3413795 TTTTTATT-TTTATTACTATTA
1 TTTTTATTATTAATT--TATTA
3413816 TTTTTATTATTAA--TATTA
1 TTTTTATTATTAATTTATTA
3413834 TTTTTATTATTAATATTATTA
1 TTTTTATTATTAAT-TTATTA
3413855 -TTTTATTA
1 TTTTTATTA
3413863 CATATACAAC
Statistics
Matches: 60, Mismatches: 2, Indels: 13
0.80 0.03 0.17
Matches are distributed among these distances:
18 18 0.30
19 3 0.05
20 10 0.17
21 26 0.43
22 3 0.05
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTTATTATTAATTTATTA
Found at i:3413814 original size:18 final size:18
Alignment explanation
Indices: 3413774--3413867 Score: 68
Period size: 18 Copynumber: 5.1 Consensus size: 18
3413764 TACATTTGGT
*
3413774 TTTTTATTATTATATTTATTA
1 TTTTTATT-TT-TA-TTAATA
*
3413795 TTTTTATTTTTATTACTA
1 TTTTTATTTTTATTAATA
*
3413813 TTATTT-TTATTATTAATA
1 TT-TTTATTTTTATTAATA
*
3413831 TTATTT-TTATTATTAATA
1 TT-TTTATTTTTATTAATA
*
3413849 TTATTA-TTTTATTACATA
1 TTTTTATTTTTATTA-ATA
3413867 T
1 T
3413868 ACAACCCAAG
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
17 9 0.14
18 41 0.63
19 5 0.08
20 2 0.03
21 8 0.12
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTATTTTTATTAATA
Found at i:3414393 original size:17 final size:18
Alignment explanation
Indices: 3414371--3414404 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
3414361 CAGAGGGAGA
3414371 GACGAACACA-CAACAGT
1 GACGAACACATCAACAGT
3414388 GACGAACACATCAACAG
1 GACGAACACATCAACAG
3414405 CAACTGAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.47, C:0.29, G:0.18, T:0.06
Consensus pattern (18 bp):
GACGAACACATCAACAGT
Found at i:3415352 original size:148 final size:146
Alignment explanation
Indices: 3415230--3415501 Score: 331
Period size: 149 Copynumber: 1.9 Consensus size: 146
3415220 TATTATTATT
*
3415230 TTAATCATATTA-ATATATATTATTT-GATTAA-TTTT-A-ATTTATTTAT-TTTTTAATATCAA
1 TTAATC-TATTATATAT-TATT-TTTAGATAAAGTTTTAATATTTATTTATATTTTTAATATCAA
* * * *
3415289 AGAAAGGGGCAGTCTTAAAGCAACTAGATGTCTGTTTTCTGATATTTTTAAATAAATAAATATTT
63 AGAAA-GAGCAGTCTTAAAGCAACTAGAAGTC-CTTTTCTGATATTTCTAAATAAATAAATA-TT
**
3415354 TACTTTTATAAAATTGTATATA
125 TACAATTATAAAATTGTATATA
* *
3415376 TTAATCTATTTTTTATTATTTTTAGATAAATGTTTTAATATTTATTTATATTTTTAATATCAAAG
1 TTAATCTATTATATATTATTTTTAGATAAA-GTTTTAATATTTATTTATATTTTTAATATCAAAG
* * *
3415441 AAAGAGCTGTCTTAAGGCACCTAGAAGTCCTTTTCTGATATTTCTAAATAAATAAATATTT
65 AAAGAGCAGTCTTAAAGCAACTAGAAGTCCTTTTCTGATATTTCTAAATAAATAAATATTT
3415502 TATTTATAAA
Statistics
Matches: 109, Mismatches: 10, Indels: 13
0.83 0.08 0.10
Matches are distributed among these distances:
144 3 0.03
145 13 0.12
146 9 0.08
147 7 0.06
148 28 0.26
149 31 0.28
150 18 0.17
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.47
Consensus pattern (146 bp):
TTAATCTATTATATATTATTTTTAGATAAAGTTTTAATATTTATTTATATTTTTAATATCAAAGA
AAGAGCAGTCTTAAAGCAACTAGAAGTCCTTTTCTGATATTTCTAAATAAATAAATATTTACAAT
TATAAAATTGTATATA
Found at i:3416055 original size:11 final size:11
Alignment explanation
Indices: 3416039--3416079 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
3416029 TTTTATTACT
3416039 TATTATTTTTA
1 TATTATTTTTA
3416050 TATTA-TTTTA
1 TATTATTTTTA
3416060 TTATTATTTTT-
1 -TATTATTTTTA
3416071 TATTTATTT
1 TA-TTATTT
3416080 ATTTTATTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 16 0.59
12 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TATTATTTTTA
Found at i:3416058 original size:26 final size:26
Alignment explanation
Indices: 3416029--3416087 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
3416019 CTTTCAAATT
3416029 TTTTATTACTTATTATTTT-TATA-TTA
1 TTTTATTA-TTATT-TTTTATATATTTA
*
3416055 TTTTATTATTATTTTTTATTTATTTA
1 TTTTATTATTATTTTTTATATATTTA
3416081 TTTTATT
1 TTTTATT
3416088 CAAGTATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 8 0.27
26 18 0.60
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTTATTATTATTTTTTATATATTTA
Found at i:3416066 original size:22 final size:21
Alignment explanation
Indices: 3416030--3416087 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 21
3416020 TTTCAAATTT
3416030 TTTA-TTACTTATTA-TTTTTA
1 TTTATTTA-TTATTATTTTTTA
3416050 TATTATTTTATTATTATTTTTTA
1 T-TTA-TTTATTATTATTTTTTA
3416073 TTTATTTATT-TTATT
1 TTTATTTATTATTATT
3416088 CAAGTATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
20 6 0.18
21 9 0.26
22 9 0.26
23 10 0.29
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTATTTATTATTATTTTTTA
Found at i:3417611 original size:8 final size:7
Alignment explanation
Indices: 3417587--3417628 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
3417577 TTTTCATACA
3417587 TGCA-TT
1 TGCATTT
3417593 TGCATTT
1 TGCATTT
3417600 TGCATCTT
1 TGCAT-TT
3417608 TGCATTT
1 TGCATTT
* *
3417615 TTCATTG
1 TGCATTT
3417622 TGCATTT
1 TGCATTT
3417629 ATACTTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
6 4 0.13
7 19 0.63
8 7 0.23
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.55
Consensus pattern (7 bp):
TGCATTT
Done.