Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009465.1 Hibiscus syriacus cultivar Beakdansim tig00113809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63520
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Found at i:7958 original size:33 final size:32
Alignment explanation
Indices: 7921--8009 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
7911 GCGTGAGCCC
*
7921 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
7954 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
7986 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
8010 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:8097 original size:32 final size:32
Alignment explanation
Indices: 8056--8188 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
8046 GTGCGTGAGG
* *
8056 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
8088 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
8120 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
8152 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
8184 CTCGG
1 CTCGG
8189 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:8312 original size:31 final size:31
Alignment explanation
Indices: 8271--8368 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
8261 CAACCCCCGA
8271 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
8302 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
8333 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
8365 CGGG
1 CGGG
8369 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:8333 original size:63 final size:63
Alignment explanation
Indices: 8234--8368 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
8224 GCCGAGAGTT
*
8234 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
8297 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
8360 GGGTGCGGG
1 GGGTGCGGG
8369 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:8345 original size:157 final size:158
Alignment explanation
Indices: 8152--8440 Score: 451
Period size: 157 Copynumber: 1.8 Consensus size: 158
8142 AGACGGGTGT
* *
8152 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCAC-GGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
8216 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
66 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
8278 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
128 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
8309 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
8374 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
8439 GG
131 GG
8441 TCACCATTGG
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
157 83 0.69
158 35 0.29
159 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (158 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
GGCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:8477 original size:32 final size:32
Alignment explanation
Indices: 8403--8536 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
8393 GTGCGTGAGG
* *
8403 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
8436 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
8468 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
8500 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
8532 CTCGG
1 CTCGG
8537 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:8619 original size:95 final size:95
Alignment explanation
Indices: 8297--8685 Score: 369
Period size: 95 Copynumber: 4.1 Consensus size: 95
8287 CCCAGGCCAC
8297 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
8362 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
8391 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
8454 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
8489 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
8553 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
8583 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
8648 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
8678 GGGTGCGG
1 GGGTGCGG
8686 CAGCCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
93 4 0.02
94 39 0.17
95 117 0.52
96 27 0.12
97 33 0.15
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:21570 original size:33 final size:32
Alignment explanation
Indices: 21533--21621 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
21523 GCGTGAGCCC
*
21533 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
21566 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
21598 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
21622 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:21709 original size:32 final size:32
Alignment explanation
Indices: 21668--21800 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
21658 GTGCGTGAGG
* *
21668 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
21700 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
21732 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
21764 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
21796 CTCGG
1 CTCGG
21801 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:21925 original size:31 final size:31
Alignment explanation
Indices: 21884--21981 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
21874 CAACCCCCGA
21884 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
21915 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
21946 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
21978 CGGG
1 CGGG
21982 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:21946 original size:63 final size:63
Alignment explanation
Indices: 21847--21981 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
21837 GCCGAGAGTT
*
21847 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
21910 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
21973 GGGTGCGGG
1 GGGTGCGGG
21982 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:21957 original size:95 final size:94
Alignment explanation
Indices: 21732--21958 Score: 244
Period size: 95 Copynumber: 2.4 Consensus size: 94
21722 AGACGGGTGT
* *
21732 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
21797 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
21826 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGACGGG
*
21888 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
62 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
21921 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
21959 CAACCCCAGG
Statistics
Matches: 100, Mismatches: 25, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
93 1 0.01
94 7 0.07
95 84 0.84
96 7 0.07
97 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:21958 original size:158 final size:158
Alignment explanation
Indices: 21764--22053 Score: 460
Period size: 158 Copynumber: 1.8 Consensus size: 158
21754 AGACGGGTGT
* *
21764 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
21829 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
66 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
21891 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
128 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
21922 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
21987 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
22052 GG
131 GG
22054 TCACCATTGG
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
157 33 0.27
158 86 0.71
159 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.37, T:0.12
Consensus pattern (158 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
GGCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:22090 original size:32 final size:32
Alignment explanation
Indices: 22016--22149 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
22006 GTGCGTGAGG
* *
22016 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
22049 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
22081 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
22113 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
22145 CTCGG
1 CTCGG
22150 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:22232 original size:95 final size:95
Alignment explanation
Indices: 21910--22298 Score: 369
Period size: 95 Copynumber: 4.1 Consensus size: 95
21900 CCCAGGCCAC
21910 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
21975 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
22004 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
22067 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
22102 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
22166 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
22196 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
22261 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
22291 GGGTGCGG
1 GGGTGCGG
22299 CAGCCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
93 4 0.02
94 39 0.17
95 117 0.52
96 27 0.12
97 33 0.15
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:22245 original size:349 final size:348
Alignment explanation
Indices: 21607--22267 Score: 1196
Period size: 349 Copynumber: 1.9 Consensus size: 348
21597 TCGGTCACCA
**
21607 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
21672 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
*
21737 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGC
131 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
* * *
21802 AACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCA
196 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
*
21867 CCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
261 CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
21932 ATCGGCAACCCCCGACGGGTGCC
326 ATCGGCAACCCCCGACGGGTGCC
*
21955 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
22020 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
22085 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
22150 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
195 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
22215 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
260 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
22268 AGTGCCGCAC
Statistics
Matches: 299, Mismatches: 13, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
348 76 0.25
349 223 0.75
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (348 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
CCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACC
ATCGGCAACCCCCGACGGGTGCC
Found at i:30534 original size:33 final size:32
Alignment explanation
Indices: 30497--30585 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
30487 GCGTGAGCCC
*
30497 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
30530 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
30562 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
30586 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:30699 original size:32 final size:32
Alignment explanation
Indices: 30632--30763 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
30622 GTGCGTGAGG
* *
30632 CTCGGTCACCATCGGC-AACCCAGGC-GGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
30663 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
30695 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
30727 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
30759 CTCGG
1 CTCGG
30764 CAACCCCAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 16 0.17
32 75 0.80
33 3 0.03
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:30888 original size:62 final size:63
Alignment explanation
Indices: 30810--30943 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
30800 GCCGAGAGTT
*
30810 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
30873 -GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
30935 GGGTGCGGG
1 GGGTGCGGG
30944 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 61 0.88
63 8 0.12
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:30956 original size:157 final size:157
Alignment explanation
Indices: 30727--31015 Score: 458
Period size: 157 Copynumber: 1.8 Consensus size: 157
30717 AGACGGGTGT
* *
30727 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
30792 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
66 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
30854 CTCGGCAACCCCAGGCCACGGTGCGGGGGC
128 CTCGGCAACCCCAGGCCACGGTGCGGGGGC
30884 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
30949 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
31014 GG
131 GG
31016 TCACCATTGG
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
156 33 0.27
157 86 0.71
158 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (157 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
GGCAACCCCAGGCCACGGTGCGGGGGC
Found at i:31052 original size:32 final size:32
Alignment explanation
Indices: 30978--31110 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
30968 GTGCGTGAGG
* *
30978 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
31011 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
31043 CTCGGTCACCATCGGCAAACCC-GACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
31074 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
31106 CTCGG
1 CTCGG
31111 CAACCCCAGG
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 30 0.33
32 34 0.38
33 26 0.29
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:31101 original size:63 final size:65
Alignment explanation
Indices: 30978--31110 Score: 180
Period size: 63 Copynumber: 2.1 Consensus size: 65
30968 GTGCGTGAGG
* * * * *
30978 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
* * *
31043 CTCGGTCACCATCGGCAAACCC-GACGGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
31106 CTCGG
1 CTCGG
31111 CAACCCCAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 33 0.55
64 6 0.10
65 21 0.35
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (65 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:31205 original size:347 final size:347
Alignment explanation
Indices: 30571--31228 Score: 1176
Period size: 347 Copynumber: 1.9 Consensus size: 347
30561 TCGGTCACCA
**
30571 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
30636 GTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGT
66 GTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGT
*
30701 CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCA
131 CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
* * *
30766 ACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCAC
196 ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
*
30831 CATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCA-CGGTGCGGGGGCCTCGGTCACCA
261 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCATCGGTGCGGGGGCCTCGGTCACCA
30895 TCGGCAACCCCCGACGGGTGCC
326 TCGGCAACCCCCGACGGGTGCC
*
30917 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
30982 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGC-GGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
31047 GTCACCATCGGCAAACCC-GACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
129 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
31111 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
194 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* *
31176 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
259 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCATCGGTGCGGG
31229 AGTGCCGCAC
Statistics
Matches: 297, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
346 76 0.26
347 155 0.52
348 66 0.22
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (347 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGT
CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCATCGGTGCGGGGGCCTCGGTCACCA
TCGGCAACCCCCGACGGGTGCC
Found at i:31247 original size:95 final size:95
Alignment explanation
Indices: 30873--31259 Score: 372
Period size: 95 Copynumber: 4.1 Consensus size: 95
30863 CCCAGGCCAC
30873 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
30938 TGCGGGAGTGCCGCACAGAACCGAGCGTT-
66 TGCGGGAGTGCCGCACAGAACCGAGAGTTG
* * * * *** * *
30967 GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAAA
1 GGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCAC
*** * ** ** * ****
31030 GCCAGACGGGTGT-CTCGGTCACCATCG-GCAAACC
63 GGGTG-CGGGAGTGC-CGCACAGAACCGAG-AGTTG
* * * *
31064 CG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
31128 TGCGGGAGTGCCGCACAGAGCCGAGAGTTG
66 TGCGGGAGTGCCGCACAGAACCGAGAGTTG
* * **
31158 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
* *
31223 TGCGGGAGTGCCGCACAGAACCGAGCGCTG
66 TGCGGGAGTGCCGCACAGAACCGAGAGTTG
31253 GGTGCGG
1 GGTGCGG
31260 CAGCCTCGCA
Statistics
Matches: 222, Mismatches: 59, Indels: 23
0.73 0.19 0.08
Matches are distributed among these distances:
94 48 0.22
95 130 0.59
96 43 0.19
97 1 0.00
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
TGCGGGAGTGCCGCACAGAACCGAGAGTTG
Found at i:39445 original size:32 final size:32
Alignment explanation
Indices: 39406--39492 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 32
39396 GCGTGAGCCC
*
39406 CGGTCACCATCGGCAATCCCAGGC-GGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
39438 CGGTCACCATC-GCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
39469 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
39493 CATTGGTGAG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
31 22 0.50
32 22 0.50
ACGTcount: A:0.21, C:0.38, G:0.26, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:39609 original size:31 final size:32
Alignment explanation
Indices: 39539--39669 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
39529 GTGCGTGAGG
* *
39539 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
39571 CTCGGTCACCATCGGCAAACCC-GACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
39602 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
39634 CTCGGTCACCATCGGCAACCCCCGAC-GGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
39665 CTCGG
1 CTCGG
39670 CAACCCCAGG
Statistics
Matches: 92, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
31 32 0.35
32 55 0.60
33 5 0.05
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:39638 original size:63 final size:63
Alignment explanation
Indices: 39537--39669 Score: 198
Period size: 63 Copynumber: 2.1 Consensus size: 63
39527 TGGTGCGTGA
*
39537 GGCTCGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA-ACCCGACGGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAACACCCGAC-GGT
* * *
39600 GTCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGGTGGCCTCGGTCACCATCGGCAACACCCGACGGT
39663 GGCTCGG
1 GGCTCGG
39670 CAACCCCAGG
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
63 45 0.71
64 18 0.29
ACGTcount: A:0.17, C:0.37, G:0.32, T:0.14
Consensus pattern (63 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAACACCCGACGGT
Found at i:39793 original size:61 final size:63
Alignment explanation
Indices: 39716--39848 Score: 243
Period size: 62 Copynumber: 2.1 Consensus size: 63
39706 GCCGAGAGTT
*
39716 GGGTGCGGGGTCCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
39778 -GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
39840 GGGTGCGGG
1 GGGTGCGGG
39849 AGTGCCGCAC
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
61 23 0.34
62 37 0.54
63 8 0.12
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:39861 original size:156 final size:156
Alignment explanation
Indices: 39634--39920 Score: 438
Period size: 156 Copynumber: 1.8 Consensus size: 156
39624 AGACGGGTGT
* *
39634 CTCGGTCACCATCGGCAACCCCCGACGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCC
1 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
39699 GGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATC-GCAACCCCCGACGGGT-GCC
66 GCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGCC
39760 TCGGCAACCCCAGGCCACGGTGCGGGGGC
128 TCGGCAACCCCAGGCCACGGTGCGGGGGC
39789 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
39854 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
65 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
39919 GG
130 GG
39921 TCACCATTGG
Statistics
Matches: 119, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
155 45 0.38
156 65 0.55
157 9 0.08
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (156 bp):
CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
GCAACCCCAGGCCACGGTGCGGGGGC
Found at i:39925 original size:33 final size:31
Alignment explanation
Indices: 39883--39998 Score: 162
Period size: 31 Copynumber: 3.7 Consensus size: 31
39873 GTGCGTGAGG
* *
39883 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAA-CCCAGACGGGT-GT
* *
39916 CTCGGTCACCATTGGCAAAGCCAGAC-GGTGT
1 CTCGGTCACCATCGGC-AACCCAGACGGGTGT
39947 CTCGGTCACCATCGGCAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAACCCAGACGGGTGT
39978 CTCGGTCACCATCGGCAACCC
1 CTCGGTCACCATCGGCAACCC
39999 CCGACGGTGC
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
30 8 0.11
31 42 0.56
32 3 0.04
33 20 0.27
34 2 0.03
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.16
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAACCCAGACGGGTGT
Found at i:39926 original size:188 final size:187
Alignment explanation
Indices: 39727--40083 Score: 483
Period size: 188 Copynumber: 1.9 Consensus size: 187
39717 GGTGCGGGGT
* * * ***
39727 CCTCGGTCACCA-TCGCAACCCCCGACGGGTGCCTCGG-CAACC-CCAGGCCACGGTG-CGGGGG
1 CCTCGGTCACCATTCGCAAACCCAGAC-GGTGCCTCGGTC-ACCACC-GGCAACCCAGACGGGGG
39788 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTG
63 CCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTG
*
39853 CCGCACAGAACCGAGCGTT-GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGG
127 CC-CACAGAACCGAGAGTTGGGTGCG-G-GGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGG
* * * * * *
39915 CCTCGGTCACCATTGGCAAAGCCAGACGGTGTCTCGGTCACCATCGGCAACCCAGACGGGTGTCT
1 CCTCGGTCACCATTCGCAAACCCAGACGGTGCCTCGGTCACCACCGGCAACCCAGACGGGGGCCT
39980 CGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCCA
66 CGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCCA
*
40045 CAGAGCCGAGAGTTGGGTGCGGGGCCTCGGTCACCATCG
131 CAGAACCGAGAGTTGGGTGCGGGGCCTCGGTCACCATCG
40084 CAACACCCGA
Statistics
Matches: 149, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
186 2 0.01
187 29 0.19
188 75 0.50
189 43 0.29
ACGTcount: A:0.17, C:0.37, G:0.34, T:0.13
Consensus pattern (187 bp):
CCTCGGTCACCATTCGCAAACCCAGACGGTGCCTCGGTCACCACCGGCAACCCAGACGGGGGCCT
CGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCCA
CAGAACCGAGAGTTGGGTGCGGGGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGG
Found at i:39954 original size:31 final size:32
Alignment explanation
Indices: 39883--40013 Score: 160
Period size: 31 Copynumber: 4.2 Consensus size: 32
39873 GTGCGTGAGG
* *
39883 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
39916 CTCGGTCACCATTGGCAAAGCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
39947 CTCGGTCACCATCGGC-AACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
39978 CTCGGTCACCATCGGCAACCCCCGAC-GGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
40009 CTCGG
1 CTCGG
40014 CAACCCCAGG
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
30 8 0.09
31 46 0.53
32 10 0.12
33 22 0.26
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:40005 original size:62 final size:64
Alignment explanation
Indices: 39883--40013 Score: 185
Period size: 62 Copynumber: 2.1 Consensus size: 64
39873 GTGCGTGAGG
* * * *
39883 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGTGT
1 CTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGC
* * *
39947 CTCGGTCACCATCGGCAA-CCCAGACGGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGTGC
1 CTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGC
40009 CTCGG
1 CTCGG
40014 CAACCCCAGG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 32 0.53
63 10 0.17
64 18 0.30
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.16
Consensus pattern (64 bp):
CTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGC
Found at i:40100 original size:92 final size:93
Alignment explanation
Indices: 39778--40159 Score: 294
Period size: 92 Copynumber: 4.1 Consensus size: 93
39768 CCCAGGCCAC
*
39778 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGC-GGGGCCTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGG
* *
39843 TGCGGGAGTGCCGCACAGAACCGAGCG-TT
64 TGCGGGAGTGCCGCACAGAACCGAGAGCTG
* * *
39872 GGTGCGTGAGG-CTCGGTCACCATCGGCAATC-CCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGTGCG-G-GGCCTCGGTCACCATCGGCAA-CACCCGAC-GGT-GCCTCGG-CAACC-----CCA
* ** * *
39934 AGCCA-GACGGTGTCTCG-GT-CAC-CATCGGCAACCCAGA-C-G
55 GGCCACG--GGTG-CGGGAGTGC-CGCA-CAG-AACCGAGAGCTG
* *
39973 GGT-----GTCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 GGTGCGGGGCCTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTG
* *
40033 CGGGAGTGCC-CACAGAGCCGAGAGTTG
66 CGGGAGTGCCGCACAGAACCGAGAGCTG
* **
40060 GGTGCGGGGCCTCGGTCACCATC-GCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGT
1 GGTGCGGGGCCTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGT
*
40124 GCGGGAGTGCCGCACAGAACCGAGCGCTG
65 GCGGGAGTGCCGCACAGAACCGAGAGCTG
40153 GGTGCGG
1 GGTGCGG
40160 CAGCCTCGCA
Statistics
Matches: 228, Mismatches: 28, Indels: 65
0.71 0.09 0.20
Matches are distributed among these distances:
85 6 0.03
86 4 0.02
87 13 0.06
88 7 0.03
89 1 0.00
91 11 0.05
92 51 0.22
93 32 0.14
94 37 0.16
95 35 0.15
96 1 0.00
99 1 0.00
100 9 0.04
101 12 0.05
102 8 0.04
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (93 bp):
GGTGCGGGGCCTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTG
CGGGAGTGCCGCACAGAACCGAGAGCTG
Found at i:48306 original size:33 final size:31
Alignment explanation
Indices: 48269--48355 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 31
48259 GCGTGAGCCC
*
48269 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGC-GGT-GCCT
* ** *
48302 CGGTCACCA-CGGCAAAACCATACGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGTGCCT
*
48332 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
48356 CATTGGTGAG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
30 12 0.27
31 13 0.30
32 10 0.23
33 9 0.20
ACGTcount: A:0.21, C:0.38, G:0.28, T:0.14
Consensus pattern (31 bp):
CGGTCACCATCGGCAAACCCAGGCGGTGCCT
Found at i:48500 original size:32 final size:32
Alignment explanation
Indices: 48402--48532 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
48392 GTGCGTGAGG
* *
48402 CTCGGTCACCATC-GC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
48433 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
48464 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
48496 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
48528 CTCGG
1 CTCGG
48533 CAACCCCAGG
Statistics
Matches: 92, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
31 40 0.43
32 44 0.48
33 8 0.09
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:48509 original size:63 final size:63
Alignment explanation
Indices: 48400--48532 Score: 189
Period size: 63 Copynumber: 2.1 Consensus size: 63
48390 TGGTGCGTGA
*
48400 GGCTCGGTCACCATCGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGAC-GGT
1 GGCTCGGTCACCATCGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * *
48462 GTCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATC-GC-AACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
48526 GGCTCGG
1 GGCTCGG
48533 CAACCCCAGG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
62 14 0.23
63 27 0.44
64 21 0.34
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (63 bp):
GGCTCGGTCACCATCGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:48656 original size:30 final size:30
Alignment explanation
Indices: 48616--48711 Score: 79
Period size: 31 Copynumber: 3.1 Consensus size: 30
48606 CAACCCCCGA
48616 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGG-GCCTCGGCAACCCCAGGCCACGGGTG
* * ****
48647 CGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGGCCTCGG-CAACC-CCAGGCCACGGGTG
*
48677 ACGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGGCCTCGGCAACCCCAGGCCACGGGTG
48708 CGGG
1 CGGG
48712 AGTGCCGCAC
Statistics
Matches: 46, Mismatches: 14, Indels: 11
0.65 0.20 0.15
Matches are distributed among these distances:
30 21 0.46
31 25 0.54
ACGTcount: A:0.14, C:0.41, G:0.36, T:0.09
Consensus pattern (30 bp):
CGGGGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:48707 original size:61 final size:63
Alignment explanation
Indices: 48579--48711 Score: 252
Period size: 61 Copynumber: 2.1 Consensus size: 63
48569 GCCGAGAGTT
48579 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
48642 GGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
48703 GGGTGCGGG
1 GGGTGCGGG
48712 AGTGCCGCAC
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
61 33 0.47
62 27 0.39
63 10 0.14
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:48808 original size:187 final size:185
Alignment explanation
Indices: 48590--48948 Score: 487
Period size: 187 Copynumber: 1.9 Consensus size: 185
48580 GGTGCGGGGT
* * * ** *
48590 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG-CAACC-CCAGGC-CA-CGGGTGCGGG
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTC-ACCACC-GGCAAACCCAG-ACGGG
48651 GCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTG
63 GCCTCGGTCACCATCGGCAACCCCCGACGG-GCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTG
48716 CCGCACAGAACCGAGCGTT-GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGTGG
127 CCGCACAGAACCGA--GTTGGGTGCG-G-GGCCTCGGTCACCATCGGCAATCCCAGGCGGTGG
* * * * * *
48777 CCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCGGTCACCATCGGCAAACCCAGACGGTGTC
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCACCGGCAAACCCAGACGGGGCC
48842 TCGGTCACCATCGGCAACCCCCGACGGGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGC
66 TCGGTCACCATCGGCAACCCCCGACGGGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGC
*
48907 ACAGAGCCGAGTTGGGTGCGGGGCCTCGGTCACCATCGGCAA
131 ACAGAACCGAGTTGGGTGCGGGGCCTCGGTCACCATCGGCAA
48949 CACCCACGGG
Statistics
Matches: 153, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
184 2 0.01
185 22 0.14
186 6 0.04
187 86 0.56
188 35 0.23
189 2 0.01
ACGTcount: A:0.17, C:0.37, G:0.33, T:0.13
Consensus pattern (185 bp):
CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCACCGGCAAACCCAGACGGGGCC
TCGGTCACCATCGGCAACCCCCGACGGGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGC
ACAGAACCGAGTTGGGTGCGGGGCCTCGGTCACCATCGGCAATCCCAGGCGGTGG
Found at i:48843 original size:31 final size:31
Alignment explanation
Indices: 48746--48868 Score: 165
Period size: 32 Copynumber: 3.9 Consensus size: 31
48736 GTGCGTGAGG
* * *
48746 CTCGGTCACCATCGGCAATCCCAGGCGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGT-GT
* *
48778 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
48810 CTCGGTCACCATCGGCAAACCCAGACGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGTGT
* *
48841 CTCGGTCACCATCGGCAACCCCCGACGG
1 CTCGGTCACCATCGGCAAACCCAGACGG
48869 GCCTCGGCAA
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 31 0.38
32 47 0.58
33 3 0.04
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAAACCCAGACGGTGT
Found at i:48995 original size:91 final size:90
Alignment explanation
Indices: 48642--49008 Score: 276
Period size: 91 Copynumber: 4.0 Consensus size: 90
48632 CCCAGGCCAC
*
48642 GGGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GGGTGCGGGGCCTCGGTCACCATCGGCAACACCCGACGG-GCCTCGGCAACCCCAGGCCACGGGT
48707 GCGGGAGTGCCGCACAGAACCGAGCGTT
65 GCGGGAGTGCCGCACAGAACCGA--GTT
* * *
48735 -GGTGCGTGAGG-CTCGGTCACCATCGGCAATC-CCAGGCGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-G-GGCCTCGGTCACCATCGGCAA-CACCCGAC-G-GGCCTCGG-CAACC-----CCA
* ** * *
48796 AGCCAGACGGGTGTCTCG-GT-CAC-CATCGGCAAACCCA---
55 GGCC--ACGGGTG-CGGGAGTGC-CGCA-CAG--AACCGAGTT
* * * *
48833 --G-ACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGCCTCGGCAACCCCAGGCCACGGGTG
1 GGGTGCGGGGCCTCGGTCACCATCGGCAACACCCGACGGGCCTCGGCAACCCCAGGCCACGGGTG
*
48895 CGGGAGTGCCGCACAGAGCCGAGTT
66 CGGGAGTGCCGCACAGAACCGAGTT
* **
48920 GGGTGCGGGGCCTCGGTCACCATCGGCAACACCC-ACGGGTGCCTCGGCAACCCCAGTCCATTGG
1 GGGTGCGGGGCCTCGGTCACCATCGGCAACACCCGAC-GG-GCCTCGGCAACCCCAGGCCACGGG
48984 TGCGGGAGTGCCGCACAGAACCGAG
64 TGCGGGAGTGCCGCACAGAACCGAG
49009 CGCTGGGTGC
Statistics
Matches: 215, Mismatches: 27, Indels: 66
0.70 0.09 0.21
Matches are distributed among these distances:
84 4 0.02
85 2 0.01
86 12 0.06
87 3 0.01
88 5 0.02
89 3 0.01
90 28 0.13
91 45 0.21
92 7 0.03
93 34 0.16
94 17 0.08
95 25 0.12
96 2 0.01
97 1 0.00
99 5 0.02
100 3 0.01
101 12 0.06
102 2 0.01
103 5 0.02
ACGTcount: A:0.18, C:0.35, G:0.34, T:0.13
Consensus pattern (90 bp):
GGGTGCGGGGCCTCGGTCACCATCGGCAACACCCGACGGGCCTCGGCAACCCCAGGCCACGGGTG
CGGGAGTGCCGCACAGAACCGAGTT
Found at i:57114 original size:32 final size:32
Alignment explanation
Indices: 57078--57163 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 32
57068 CGTGAGCCCC
*
57078 GTCACCATCGGCAATCCCAGGC-GGTGGCCTCG
1 GTCACCATCGGCAAACCCAGGCGGGT-GCCTCG
* ** *
57110 GTCACCATCGGCAAAACCATACGGGTGTCTCG
1 GTCACCATCGGCAAACCCAGGCGGGTGCCTCG
*
57142 GTCACCATCGGCAACCCCAGGC
1 GTCACCATCGGCAAACCCAGGC
57164 CATTGGTGAG
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
32 41 0.93
33 3 0.07
ACGTcount: A:0.21, C:0.37, G:0.27, T:0.15
Consensus pattern (32 bp):
GTCACCATCGGCAAACCCAGGCGGGTGCCTCG
Found at i:57247 original size:31 final size:32
Alignment explanation
Indices: 57212--57337 Score: 177
Period size: 31 Copynumber: 4.0 Consensus size: 32
57202 CGTGAGGCTC
* *
57212 GTCACCATCGGC-AACCCAGGCGGGTGGCCTC-
1 GTCACCATCGGCAAACCCAGACGGGT-GTCTCG
57243 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
57275 GTCACCATCGGCAAACCCAGAC-GGTGTCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
* * *
57306 GTCACCATCGGCAACCCCCGACGGGTGGCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
57338 CAACCCCAGG
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
31 45 0.52
32 42 0.48
ACGTcount: A:0.19, C:0.37, G:0.29, T:0.14
Consensus pattern (32 bp):
GTCACCATCGGCAAACCCAGACGGGTGTCTCG
Found at i:57312 original size:63 final size:63
Alignment explanation
Indices: 57207--57337 Score: 178
Period size: 63 Copynumber: 2.1 Consensus size: 63
57197 TGGTGCGTGA
*
57207 GGCTC-GTCACCATCGGCAACCCAGGCGGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGT
* * * *
57269 GTCTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGGTGGCCTC-GTCACCATCGGCAAACCCAGACGGGT
57332 GGCTCG
1 GGCTCG
57338 CAACCCCAGG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
62 8 0.13
63 44 0.73
64 8 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (63 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGT
Found at i:57480 original size:62 final size:61
Alignment explanation
Indices: 57383--57513 Score: 237
Period size: 62 Copynumber: 2.1 Consensus size: 61
57373 GCCGAGAGTT
*
57383 GGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTC-GCAACCCCAGGCCAC
57445 GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCAC
57506 -GGTGCGGG
1 GGGTGCGGG
57514 AGTGCCGCAC
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
60 8 0.12
61 15 0.22
62 45 0.66
ACGTcount: A:0.14, C:0.40, G:0.35, T:0.11
Consensus pattern (61 bp):
GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCAC
Found at i:57490 original size:31 final size:31
Alignment explanation
Indices: 57390--57491 Score: 93
Period size: 31 Copynumber: 3.3 Consensus size: 31
57380 GTTGGGTGCG
57390 GGGT-CCTCGTCACCATCGGCAACCCCCGAC
1 GGGTGCCTCGTCACCATCGGCAACCCCCGAC
* * * ****
57420 GGGTGCCTCGGCAACC-CCAGGCCACGGGTG-C
1 GGGTGCCTCGTC-ACCATC-GGCAACCCCCGAC
*
57451 GGGGGCCTCGTCACCATCGGCAACCCCCGAC
1 GGGTGCCTCGTCACCATCGGCAACCCCCGAC
57482 GGGTGCCTCG
1 GGGTGCCTCG
57492 CAACCCCAGG
Statistics
Matches: 51, Mismatches: 16, Indels: 9
0.67 0.21 0.12
Matches are distributed among these distances:
30 13 0.25
31 29 0.57
32 9 0.18
ACGTcount: A:0.14, C:0.42, G:0.32, T:0.12
Consensus pattern (31 bp):
GGGTGCCTCGTCACCATCGGCAACCCCCGAC
Found at i:57526 original size:154 final size:153
Alignment explanation
Indices: 57306--57583 Score: 411
Period size: 154 Copynumber: 1.8 Consensus size: 153
57296 CGGTGTCTCG
* * *
57306 GTCACCATCGGCAACCCCCGACGGGTGGCTCGCAACCCCAGGCCACGGGTCGGGAGTTCCGGACA
1 GTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCACGGGTCGGGAGTGCCGCACA
* *
57371 GAGCCGAGAGTTGGGTGCG-G-GGTCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
66 GAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGG-GCCTCGGCA
57433 ACCCCAGGCCACGGGTGCGGGGGCCTC
127 ACCCCAGGCCACGGGTGCGGGGGCCTC
57460 GTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCAC-GGTGCGGGAGTGCCGCAC
1 GTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCACGGGT-CGGGAGTGCCGCAC
* * *
57524 AGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGGCCTCGG
65 AGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGGCCTCGG
57584 TCACCATTGG
Statistics
Matches: 112, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
153 19 0.17
154 91 0.81
155 2 0.02
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (153 bp):
GTCACCATCGGCAACCCCCGACGGGTGCCTCGCAACCCCAGGCCACGGGTCGGGAGTGCCGCACA
GAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGGCCTCGGCAACCC
CAGGCCACGGGTGCGGGGGCCTC
Found at i:57586 original size:31 final size:30
Alignment explanation
Indices: 57548--57675 Score: 150
Period size: 31 Copynumber: 4.2 Consensus size: 30
57538 GTGCGTGAGG
*
57548 CTCGGTCACCATCGGCAATCCCAGGCGGGGC
1 CTCGGTCACCATCGGCAA-CCCAGACGGGGC
* * *
57579 CTCGGTCACCATTGGCAAGCCAGAC-GGGT
1 CTCGGTCACCATCGGCAACCCAGACGGGGC
*
57608 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGC-AACCCAGACGGG-GC
* *
57640 CTCGGTCACCATCGGCAACCCCCGACGGTGC
1 CTCGGTCACCATCGGCAA-CCCAGACGGGGC
57671 CTCGG
1 CTCGG
57676 CAACCCCAGG
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
29 18 0.21
30 13 0.15
31 27 0.32
32 26 0.31
ACGTcount: A:0.18, C:0.38, G:0.30, T:0.15
Consensus pattern (30 bp):
CTCGGTCACCATCGGCAACCCAGACGGGGC
Found at i:57803 original size:96 final size:95
Alignment explanation
Indices: 57640--57813 Score: 294
Period size: 96 Copynumber: 1.8 Consensus size: 95
57630 AGACGGGTGT
*
57640 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
1 CTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
*
57705 GCACAGAGCCGAGAGTTTGGGTGCGGGGGC
66 GCACAGAACCGAGAGTTTGGGTGCGGGGGC
* **
57735 CTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
57800 CGCACAGAACCGAG
65 CGCACAGAACCGAG
57814 CGCTGGGTGC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
95 25 0.34
96 48 0.66
ACGTcount: A:0.18, C:0.36, G:0.34, T:0.12
Consensus pattern (95 bp):
CTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTTGGGTGCGGGGGC
Found at i:57832 original size:95 final size:95
Alignment explanation
Indices: 57640--57833 Score: 291
Period size: 96 Copynumber: 2.0 Consensus size: 95
57630 AGACGGGTGT
*
57640 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
1 CTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * **
57705 GCACAGAGCCGAGAGTTTGGGTGCGGGGGC
66 GCACAGAACCGAGAGTCTGGGTGCGGCAGC
* **
57735 CTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
*
57800 CGCACAGAACCGAGCG-CTGGGTGCGGCAGC
65 CGCACAGAACCGAGAGTCTGGGTGCGGCAGC
57830 CTCG
1 CTCG
57834 CACAGCGTCG
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
95 40 0.45
96 49 0.55
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (95 bp):
CTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTCTGGGTGCGGCAGC
Done.