Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009466.1 Hibiscus syriacus cultivar Beakdansim tig00114086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93824
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Found at i:11031 original size:33 final size:32
Alignment explanation
Indices: 10985--11072 Score: 104
Period size: 33 Copynumber: 2.7 Consensus size: 32
10975 CCCCGTGTGC
* * *
10985 GTGCGCTCGGTCACCATCGGTAATCCAAGGCGG
1 GTGC-CTCGGTCACCATCGGCAAACCAAGACGG
* *
11018 GTGGCCTCGGTCACCATCGACAAACCCAGACGG
1 GT-GCCTCGGTCACCATCGGCAAACCAAGACGG
*
11051 GTGTCTCGGTCACCATCGGCAA
1 GTGCCTCGGTCACCATCGGCAA
11073 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
32 18 0.38
33 27 0.57
34 2 0.04
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.17
Consensus pattern (32 bp):
GTGCCTCGGTCACCATCGGCAAACCAAGACGG
Found at i:11233 original size:32 final size:33
Alignment explanation
Indices: 11157--11241 Score: 109
Period size: 33 Copynumber: 2.6 Consensus size: 33
11147 GTGTGCGTGA
* * ** *
11157 GCCTCGGACACCATCGGCAATCCTGGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
11190 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
*
11222 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
11242 CCCCGGGCCA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 19 0.41
33 27 0.59
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
Found at i:11234 original size:169 final size:170
Alignment explanation
Indices: 10853--11432 Score: 1015
Period size: 169 Copynumber: 3.4 Consensus size: 170
10843 ACGTGTGCGT
**
10853 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
10918 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTC-GTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
10982 TGCGTGCG-CTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
11021 GCCTCGGTCACCATCGACAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
11085 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* **
11150 TGCGTGAGCCTCGGACACCATCGGCAATCCTGGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
11190 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
11255 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCCCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
11319 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
11359 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
11424 GTGCGGGAG
66 GTGCGGGAG
11433 CCTCGGTCAC
Statistics
Matches: 391, Mismatches: 18, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
167 50 0.13
168 80 0.20
169 199 0.51
170 62 0.16
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:11402 original size:32 final size:33
Alignment explanation
Indices: 11326--11410 Score: 136
Period size: 33 Copynumber: 2.6 Consensus size: 33
11316 TTGTGCGTGA
* *
11326 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
11359 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
*
11391 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
11411 CCCCGGGCCA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 19 0.39
33 30 0.61
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
Found at i:11457 original size:17 final size:17
Alignment explanation
Indices: 11435--11468 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
11425 TGCGGGAGCC
11435 TCGGTCACCATCGGCAG
1 TCGGTCACCATCGGCAG
11452 TCGGTCACCATCGGCAG
1 TCGGTCACCATCGGCAG
11469 GGCGGGTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.35, G:0.29, T:0.18
Consensus pattern (17 bp):
TCGGTCACCATCGGCAG
Found at i:11933 original size:11 final size:11
Alignment explanation
Indices: 11919--11950 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
11909 TCCCGGTGGT
11919 GCTCCGGCGAC
1 GCTCCGGCGAC
11930 GCTCCGGCGAC
1 GCTCCGGCGAC
11941 GCTCCGGCGA
1 GCTCCGGCGA
11951 GACATTATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.44, G:0.38, T:0.09
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:25611 original size:32 final size:33
Alignment explanation
Indices: 25535--25619 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
25525 GTGTGCGTGC
* * *
25535 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
25568 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
25600 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
25620 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:25745 original size:31 final size:31
Alignment explanation
Indices: 25703--25787 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 31
25693 CGTGGCGTGA
* * *
25703 GCCTCGG-CACCATCGGCAA-TCGGGCGGGT
1 GCCTCGGTCACCATCGGCAACCCAGACGGGT
25732 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGC-AACCCAGACGGGT
*
25765 GTCTCGGTCACCATCGGCAACCC
1 GCCTCGGTCACCATCGGCAACCC
25788 CGGGCCATTG
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
30 7 0.15
31 15 0.31
32 19 0.40
33 7 0.15
ACGTcount: A:0.18, C:0.38, G:0.31, T:0.14
Consensus pattern (31 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGGT
Found at i:25898 original size:166 final size:168
Alignment explanation
Indices: 25398--25967 Score: 972
Period size: 166 Copynumber: 3.4 Consensus size: 168
25388 ACGTGTGCGT
**
25398 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
25463 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGG-CCCC-TG
* * *
25528 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
129 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
25568 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
25632 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTGT-
*
25697 GCGTGAGCCTCGG-CACCATCGGCAAT--CGGGCGGGTG
130 GCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
25733 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
25798 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGC-GG-GTCTCGGTCACCATCAGGCCCTTGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTGTG
25861 CGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 CGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
25899 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
25964 GTGC
66 GTGC
25968 CTCGGTCACC
Statistics
Matches: 380, Mismatches: 15, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
163 13 0.03
164 35 0.09
165 66 0.17
166 119 0.31
167 14 0.04
168 16 0.04
169 63 0.17
170 54 0.14
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (168 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTGTG
CGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
Found at i:25942 original size:32 final size:33
Alignment explanation
Indices: 25866--25950 Score: 136
Period size: 33 Copynumber: 2.6 Consensus size: 33
25856 TTGTGCGTGA
* *
25866 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
25899 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
*
25931 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
25951 CCCCGGGCCA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 19 0.39
33 30 0.61
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
Found at i:26063 original size:32 final size:33
Alignment explanation
Indices: 26008--26071 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
25998 CACAGGCAGT
*
26008 CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAA
1 CCCAGACGGGTGGCCTCGGTCACCATCGGCAAA
*
26041 CCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 CCCAGACGGGTGGCCTCGGTCACCATCGGCAA
26072 CCCCGGCCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 19 0.66
33 10 0.34
ACGTcount: A:0.19, C:0.36, G:0.31, T:0.14
Consensus pattern (33 bp):
CCCAGACGGGTGGCCTCGGTCACCATCGGCAAA
Found at i:34615 original size:32 final size:33
Alignment explanation
Indices: 34539--34623 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
34529 GTGTGCGTGC
* * *
34539 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
34572 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
34604 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
34624 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:34784 original size:32 final size:33
Alignment explanation
Indices: 34708--34792 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
34698 GTGTGCGTGA
* *
34708 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
34741 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
34773 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
34793 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:34943 original size:168 final size:170
Alignment explanation
Indices: 34402--34982 Score: 1035
Period size: 169 Copynumber: 3.4 Consensus size: 170
34392 CCACGTGTGC
**
34402 GGCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT
1 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT
34467 GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGC-GGAGCCTCGGTCACCATCAGGCCCCCGT
66 GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGT
* *
34531 GTGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGT
131 GTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGT
34571 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATT
1 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT
* *
34635 GGTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGT
66 GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGT
34700 GTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGT
131 GTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGT
34740 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT
1 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT
* * *
34805 GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTT
66 GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGT
*
34869 G-GCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGT
131 GTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGT
*
34908 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATT
1 GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT
34973 GGTGCGGGAG
66 GGTGCGGGAG
34983 CCTCGGTCAC
Statistics
Matches: 397, Mismatches: 13, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
168 152 0.38
169 183 0.46
170 62 0.16
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT
GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGT
GTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGT
Found at i:34952 original size:32 final size:32
Alignment explanation
Indices: 34876--35065 Score: 184
Period size: 32 Copynumber: 5.6 Consensus size: 32
34866 CTTGGCGTGA
*
34876 GCCTCGGTCACCATCGGCAATCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
34908 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
* * * *
34941 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGA
1 GCCTCGGTCACCATCGGCAA--AC---CCA---G-GCGGGT
**
34982 GCCTCGGTCACCATCGGC-AGTCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
35013 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
35046 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
35066 CCGGGCCATT
Statistics
Matches: 130, Mismatches: 16, Indels: 23
0.77 0.09 0.14
Matches are distributed among these distances:
31 5 0.04
32 56 0.43
33 40 0.31
34 1 0.01
35 3 0.02
37 3 0.02
40 2 0.02
41 20 0.15
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
Found at i:35031 original size:105 final size:104
Alignment explanation
Indices: 34874--35085 Score: 381
Period size: 105 Copynumber: 2.0 Consensus size: 104
34864 CGCTTGGCGT
34874 GAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGG
1 GAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGG
*
34939 GTGTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGG
66 GTGTCTCGGTCACCATCGGCAA--CCGGGCCATTGGTGCGG
*
34980 GAGCCTCGGTCACCATCGGCAGT-CCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGG
1 GAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGG
35044 GTGTCTCGGTCACCATCGGCAACCGGGCCATTGGTGCGG
66 GTGTCTCGGTCACCATCGGCAACCGGGCCATTGGTGCGG
35083 GAG
1 GAG
35086 TGCCGCACAG
Statistics
Matches: 104, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
103 20 0.19
105 62 0.60
106 22 0.21
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (104 bp):
GAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGG
GTGTCTCGGTCACCATCGGCAACCGGGCCATTGGTGCGG
Found at i:35465 original size:11 final size:11
Alignment explanation
Indices: 35451--35482 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
35441 TCCCGGTGGT
35451 GCTCCGGCGAC
1 GCTCCGGCGAC
*
35462 GCTCCGGCGAT
1 GCTCCGGCGAC
35473 GCTCCGGCGA
1 GCTCCGGCGA
35483 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:43591 original size:32 final size:33
Alignment explanation
Indices: 43515--43599 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
43505 GTGTGCGTGC
* * *
43515 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
43548 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
43580 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
43600 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:43721 original size:33 final size:32
Alignment explanation
Indices: 43684--43766 Score: 116
Period size: 33 Copynumber: 2.6 Consensus size: 32
43674 GTGTGCGTGA
* *
43684 GCCTCGGTCACCATCGGCAATCCAAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGT
*
43716 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCAAGACGGGT
43749 --CTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
43767 CCCCGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
30 18 0.38
33 29 0.62
ACGTcount: A:0.20, C:0.36, G:0.29, T:0.14
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGT
Found at i:43893 original size:33 final size:33
Alignment explanation
Indices: 43851--44039 Score: 188
Period size: 33 Copynumber: 5.6 Consensus size: 33
43841 TTGTGCGTGA
43851 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
* *
43884 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
* * * * *
43916 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAATCCCAGG-C----G-G-GTG
*
43956 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
*
43990 GCCTCGGTCACCATCGGCAA-CCCAGAC-GGT-
1 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
*
44020 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
44040 CCCCGGGCCA
Statistics
Matches: 130, Mismatches: 17, Indels: 21
0.77 0.10 0.12
Matches are distributed among these distances:
30 19 0.15
31 3 0.02
32 28 0.22
33 50 0.38
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
Found at i:43968 original size:106 final size:104
Alignment explanation
Indices: 43843--44061 Score: 393
Period size: 106 Copynumber: 2.1 Consensus size: 104
43833 CAGGCCGCTT
*
43843 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGC-AACCC
*
43908 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
65 AGAC-GGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
43949 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAACCCA
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAACCCA
44014 GACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 GACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
44053 GTGCGGGAG
1 GTGCGGGAG
44062 TGCCGCACAG
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
104 44 0.40
105 9 0.08
106 57 0.52
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (104 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAACCCA
GACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:44028 original size:30 final size:32
Alignment explanation
Indices: 43957--44042 Score: 122
Period size: 30 Copynumber: 2.7 Consensus size: 32
43947 TGGTGCGGGA
* *
43957 GCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCA-ACCCAGACGGGTG
43990 GCCTCGGTCACCATCGGCAACCCAGAC-GGT-
1 GCCTCGGTCACCATCGGCAACCCAGACGGGTG
*
44020 GTCTCGGTCACCATCGGCAACCC
1 GCCTCGGTCACCATCGGCAACCC
44043 CGGGCCATTG
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
30 22 0.44
31 3 0.06
32 6 0.12
33 19 0.38
ACGTcount: A:0.16, C:0.40, G:0.29, T:0.15
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGGTG
Found at i:44039 original size:169 final size:170
Alignment explanation
Indices: 43378--43957 Score: 1033
Period size: 169 Copynumber: 3.4 Consensus size: 170
43368 ACGTGTGCGT
**
43378 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
43443 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
43508 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
43548 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
43612 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
43677 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
43717 GCCTCGGTCACCATCGGCAAACCCAGAC-GG-GTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
43780 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
43844 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
43884 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
43949 GTGCGGGAG
66 GTGCGGGAG
43958 CCTCGGTCAC
Statistics
Matches: 394, Mismatches: 13, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
167 96 0.24
168 66 0.17
169 178 0.45
170 54 0.14
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:44130 original size:104 final size:102
Alignment explanation
Indices: 43884--44192 Score: 318
Period size: 104 Copynumber: 3.1 Consensus size: 102
43874 CAGGCGGGTG
*
43884 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGC-AACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* ** ** * * *
43949 GTGCGGGAG-CCTCGGTCACCATC-GGCAGTCCCAG-GCGGGTG
64 GTGCGGGAGTAC-CGCACAGAACCGGGC-GT--CGGTGCGGG-A
43990 GCCTCGGTCACCATCGGCAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGT
1 GCCTCGGTCACCATCGGCAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGT
* *
44055 GCGGGAGTGCCGCACAGAACCGGGCGTTGGTGCGGGA
66 GCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
* *
44092 GCCTCGGTCACCATCGGCAACCCCCGACGG-G--T--G---CC-TCGGCAACCCCAGGCCATTGG
1 GCCTCGGTCACCATCGGCAA-CCCAGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGG
* *
44148 TGCGGGAGTACCGCACAGAACCGAGCGCTGGGTGCGGGA
65 TGCGGGAGTACCGCACAGAACCGGGCG-TCGGTGCGGGA
44187 GCCTCG
1 GCCTCG
44193 CACAGCGTCG
Statistics
Matches: 183, Mismatches: 15, Indels: 21
0.84 0.07 0.10
Matches are distributed among these distances:
94 45 0.25
95 18 0.10
98 1 0.01
100 1 0.01
102 22 0.12
103 13 0.07
104 52 0.28
105 13 0.07
106 18 0.10
ACGTcount: A:0.17, C:0.35, G:0.34, T:0.14
Consensus pattern (102 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGT
GCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
Found at i:44442 original size:11 final size:11
Alignment explanation
Indices: 44428--44459 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
44418 TCCCGGTGGT
44428 GCTCCGGCGAC
1 GCTCCGGCGAC
*
44439 GCTCCGGCGAT
1 GCTCCGGCGAC
44450 GCTCCGGCGA
1 GCTCCGGCGA
44460 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:52578 original size:32 final size:33
Alignment explanation
Indices: 52502--52586 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
52492 GTGTGCGTGC
* * *
52502 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
52535 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
52567 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
52587 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:52648 original size:169 final size:170
Alignment explanation
Indices: 52365--52946 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
52355 ACGTGTGCGT
**
52365 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
52430 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
52495 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
52535 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
52599 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
52664 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
52704 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
52769 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
52833 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
52873 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
52938 GTGCGGGAG
66 GTGCGGGAG
52947 CCTCGGTCAC
Statistics
Matches: 398, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
169 282 0.71
170 116 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:52747 original size:32 final size:33
Alignment explanation
Indices: 52671--52755 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
52661 GTGTGCGTGA
* *
52671 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
52704 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
52736 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
52756 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:52916 original size:32 final size:32
Alignment explanation
Indices: 52840--53029 Score: 200
Period size: 32 Copynumber: 5.6 Consensus size: 32
52830 TTGTGCGTGA
*
52840 GCCTCGGTCACCATCGGCAATCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
52872 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
* * * *
52905 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGA
1 GCCTCGGTCACCATCGGCAA--AC---CCA---G-GCGGGT
**
52946 GCCTCGGTCACCATCGGCAGTCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
52978 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
53010 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
53030 CCCCGGGCCA
Statistics
Matches: 132, Mismatches: 16, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
32 71 0.54
33 31 0.23
34 1 0.01
36 3 0.02
37 3 0.02
39 1 0.01
40 1 0.01
41 21 0.16
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
Found at i:53016 original size:105 final size:106
Alignment explanation
Indices: 52832--53051 Score: 406
Period size: 105 Copynumber: 2.1 Consensus size: 106
52822 CAGGCCGCTT
*
52832 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
52897 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
52938 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGT-GCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
53002 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
53043 GTGCGGGAG
1 GTGCGGGAG
53052 TGCCGCACAG
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
105 73 0.66
106 38 0.34
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:53430 original size:11 final size:11
Alignment explanation
Indices: 53416--53447 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
53406 TCCCGGTGGT
53416 GCTCCGGCGAC
1 GCTCCGGCGAC
*
53427 GCTCCGGCGAT
1 GCTCCGGCGAC
53438 GCTCCGGCGA
1 GCTCCGGCGA
53448 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:61568 original size:32 final size:33
Alignment explanation
Indices: 61492--61576 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
61482 GTGTGCGTGC
* * *
61492 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
61525 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
61557 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
61577 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:61638 original size:169 final size:170
Alignment explanation
Indices: 61355--61935 Score: 1042
Period size: 169 Copynumber: 3.4 Consensus size: 170
61345 ACGTGTGCGT
**
61355 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
61420 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
61485 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
61525 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
61589 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
61654 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
61694 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
61758 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
61822 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
61862 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
61927 GTGCGGGAG
66 GTGCGGGAG
61936 CCTCGGTCAC
Statistics
Matches: 397, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
168 99 0.25
169 244 0.61
170 54 0.14
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:61737 original size:32 final size:33
Alignment explanation
Indices: 61661--61745 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
61651 GTGTGCGTGA
* *
61661 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
61694 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
61726 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
61746 CCCCGGCCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:61871 original size:33 final size:33
Alignment explanation
Indices: 61829--62019 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
61819 TTGTGCGTGA
*
61829 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
61862 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
61894 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
61934 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
61968 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
62000 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
62020 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:61903 original size:65 final size:66
Alignment explanation
Indices: 61829--62019 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
61819 TTGTGCGTGA
*
61829 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
61894 -
66 G
* * * * * **
61894 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
61959 AGGCGGGTG
58 AGACGGGTG
* *
61968 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
62020 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:61946 original size:106 final size:106
Alignment explanation
Indices: 61821--62041 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
61811 CAGGCCGCTT
*
61821 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
61886 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
61927 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
61992 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
62033 GTGCGGGAG
1 GTGCGGGAG
62042 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:62421 original size:11 final size:11
Alignment explanation
Indices: 62407--62438 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
62397 TCCCGGTGGT
62407 GCTCCGGCGAC
1 GCTCCGGCGAC
*
62418 GCTCCGGCGAT
1 GCTCCGGCGAC
62429 GCTCCGGCGA
1 GCTCCGGCGA
62439 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:70555 original size:29 final size:30
Alignment explanation
Indices: 70474--70556 Score: 89
Period size: 29 Copynumber: 2.7 Consensus size: 30
70464 GTGCGTGCGC
* * *
70474 CTCGGTCACCATCGGTAATCCAAGGCGGGTGG
1 CTCGGTCACCATCGGCAA-CCCAGACGGGT-G
70506 CCTCGGTCACCATC-GCAAACCCAGACGGGT-
1 -CTCGGTCACCATCGGC-AACCCAGACGGGTG
70536 CTCGGTCACCATCGGCAACCC
1 CTCGGTCACCATCGGCAACCC
70557 CGGCCATTGG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
29 18 0.40
30 2 0.04
32 10 0.22
33 15 0.33
ACGTcount: A:0.20, C:0.37, G:0.27, T:0.16
Consensus pattern (30 bp):
CTCGGTCACCATCGGCAACCCAGACGGGTG
Found at i:70713 original size:32 final size:33
Alignment explanation
Indices: 70637--70721 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
70627 GTGTGCGTGA
* *
70637 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
70670 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
70702 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
70722 CCCCGGCCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:70802 original size:168 final size:170
Alignment explanation
Indices: 70335--70911 Score: 1006
Period size: 168 Copynumber: 3.4 Consensus size: 170
70325 ACGTGTGCGT
**
70335 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
70400 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
70465 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
70505 GCCTCGGTCACCATC-GCAAACCCAGAC-GG-GTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
70566 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGC-GGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
70630 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
70670 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
70734 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
70798 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
70838 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
70903 GTGCGGGAG
66 GTGCGGGAG
70912 CCTCGGTCAC
Statistics
Matches: 389, Mismatches: 13, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
165 82 0.21
166 53 0.14
167 26 0.07
168 166 0.43
169 47 0.12
170 15 0.04
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:70847 original size:33 final size:33
Alignment explanation
Indices: 70805--70995 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
70795 TTGTGCGTGA
*
70805 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
70838 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
70870 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
70910 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
70944 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
70976 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
70996 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:70879 original size:65 final size:66
Alignment explanation
Indices: 70805--70995 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
70795 TTGTGCGTGA
*
70805 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
70870 -
66 G
* * * * * **
70870 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
70935 AGGCGGGTG
58 AGACGGGTG
* *
70944 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
70996 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:70922 original size:106 final size:106
Alignment explanation
Indices: 70797--71017 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
70787 CAGGCCGCTT
*
70797 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
70862 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
70903 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
70968 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
71009 GTGCGGGAG
1 GTGCGGGAG
71018 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:71398 original size:11 final size:11
Alignment explanation
Indices: 71384--71415 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
71374 TCCCGGTGGT
71384 GCTCCGGCGAC
1 GCTCCGGCGAC
*
71395 GCTCCGGCGAT
1 GCTCCGGCGAC
71406 GCTCCGGCGA
1 GCTCCGGCGA
71416 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:79493 original size:32 final size:33
Alignment explanation
Indices: 79417--79501 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
79407 GTGTGCGTGC
* * *
79417 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
79450 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
79482 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
79502 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:79592 original size:169 final size:170
Alignment explanation
Indices: 79361--79860 Score: 898
Period size: 169 Copynumber: 3.0 Consensus size: 170
79351 TTGTGCGCCG
*
79361 CAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTGCGTGCGCCTCGGTC
1 CAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTC
*
79426 ACCATCGGTAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
66 ACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
79491 ACCATCGGCAACCCC-GGCCATTGGTGCGGGAGTGCCGCA
131 ACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCA
* *
79530 CAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTC
1 CAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTC
79595 ACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
66 ACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
79660 ACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCA
131 ACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCA
* * *
79700 CAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTGTGCGTGAGCCTCGGTC
1 CAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTC
*
79764 ACCATCGGCAATCCCAGGC-GGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
66 ACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
*
79828 ACCATCGGTAACCCCGGGCCATTGGTGCGGGAG
131 ACCATCGGCAACCCCGGGCCATTGGTGCGGGAG
79861 CCTCGGTCAC
Statistics
Matches: 319, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
168 77 0.24
169 180 0.56
170 62 0.19
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.17
Consensus pattern (170 bp):
CAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTC
ACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
ACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCA
Found at i:79662 original size:32 final size:33
Alignment explanation
Indices: 79586--79670 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
79576 GTGTGCGTGA
* *
79586 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
79619 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
79651 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
79671 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:79791 original size:32 final size:32
Alignment explanation
Indices: 79755--79943 Score: 175
Period size: 32 Copynumber: 5.6 Consensus size: 32
79745 TTGTGCGTGA
*
79755 GCCTCGGTCACCATCGGCAATCCCAGGCGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGTG
*
79787 GCCTCGGTCACCATCGGCAAACCCAGACGG-G
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGTG
* * * *
79818 TGTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 -GCCTCGGTCACCATCGGCAAACCCAGG-C---GGT----G
**
79859 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGC-GGTG
*
79893 GCCTCGGTCACCATCGGCAAACCCAGACGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGTG
*
79924 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
79944 CCCCGGGCCA
Statistics
Matches: 129, Mismatches: 18, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
31 20 0.16
32 53 0.41
33 26 0.20
34 1 0.01
36 2 0.02
38 3 0.02
40 1 0.01
41 23 0.18
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGTG
Found at i:79828 original size:64 final size:65
Alignment explanation
Indices: 79755--79943 Score: 193
Period size: 64 Copynumber: 2.8 Consensus size: 65
79745 TTGTGCGTGA
*
79755 GCCTCGGTCACCATCGGCAATCCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTG
* * * * **
79819 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C---GGT----G-GCCTCGGTCACCATCGGCAAACCC
*
79884 AGGCGGGTG
57 AGACGGGTG
* *
79893 GCCTCGGTCACCATCGGCAAACCCAGACGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGTGGCCTCGGTCACCATCGGCAA
79944 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
64 41 0.41
65 1 0.01
68 3 0.03
70 3 0.03
72 1 0.01
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (65 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTG
Found at i:79870 original size:105 final size:105
Alignment explanation
Indices: 79747--79965 Score: 395
Period size: 105 Copynumber: 2.1 Consensus size: 105
79737 CAGGCCGCTT
*
79747 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGC-GGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
79811 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGAC-GGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
79852 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
79917 AGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
79957 GTGCGGGAG
1 GTGCGGGAG
79966 TGCCGCACAG
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
105 78 0.71
106 32 0.29
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (105 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:79933 original size:31 final size:33
Alignment explanation
Indices: 79860--79943 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
79850 TGGTGCGGGA
** *
79860 GCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
79893 GCCTCGGTCACCATCGGCAAACCCAGAC-GGT-
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
*
79924 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
79944 CCCCGGGCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
31 19 0.40
32 3 0.06
33 25 0.53
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTG
Found at i:79943 original size:169 final size:166
Alignment explanation
Indices: 79289--79907 Score: 768
Period size: 169 Copynumber: 3.7 Consensus size: 166
79279 CCACGTGCGT
**
79289 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT-
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
79353 GTGC----GC-C-GCAGAACCGAGC-GT-TGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGCTCGGCA-CATCG-GCAGTCTGGTGCGGGAGCCTCGGTCACCATCAGG-CCCC-TG
* *
79410 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
127 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
79450 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
79514 GTGCGGGAG-TGCCGCACAGTACCG-AGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCG
66 GTGCGGGAGCT-CGGCACA-T-CGGCAG-TCTGGTGCGGGAGCCTCGGTCACCATCAGG-CCCC-
79577 TGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
125 TGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
79619 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * * *
79684 GTGCGGGAG-TGCCGCACAGAACCGAGC-GT-TGGTGCGGGAGTCTCGGTCACCATCAGGCCGCT
66 GTGCGGGAGCT-CGGCAC---ATCG-GCAGTCTGGTGCGGGAGCCTCGGTCACCATCAGGCC-CC
*
79746 TGTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGC-GGTG
125 TGTGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
79787 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
** *
79852 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAG-GCGGGTGGCCTCGGTCACCATC
66 GTGCGGGAG-CTCGG-CA-CATCGGCAGT-CTGGTGCGGG-AGCCTCGGTCACCATC
79908 GGCAAACCCA
Statistics
Matches: 411, Mismatches: 19, Indels: 47
0.86 0.04 0.10
Matches are distributed among these distances:
160 7 0.02
161 58 0.14
165 1 0.00
166 2 0.00
167 7 0.02
168 84 0.20
169 175 0.43
170 71 0.17
171 3 0.01
172 2 0.00
173 1 0.00
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.16
Consensus pattern (166 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGCTCGGCACATCGGCAGTCTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTGTGCG
TGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:80344 original size:11 final size:11
Alignment explanation
Indices: 80330--80361 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
80320 TCCCGGTGGT
80330 GCTCCGGCGAC
1 GCTCCGGCGAC
*
80341 GCTCCGGCGAT
1 GCTCCGGCGAC
80352 GCTCCGGCGA
1 GCTCCGGCGA
80362 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:88469 original size:32 final size:33
Alignment explanation
Indices: 88393--88477 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
88383 GTGTGCGTGC
* * *
88393 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
88426 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
88458 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
88478 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:88539 original size:169 final size:170
Alignment explanation
Indices: 88256--88837 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
88246 ACGTGTGCGT
**
88256 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
88321 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
88386 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
88426 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
88490 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
88555 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
88595 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
88660 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
88724 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
88764 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
88829 GTGCGGGAG
66 GTGCGGGAG
88838 CCTCGGTCAC
Statistics
Matches: 398, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
169 282 0.71
170 116 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:88638 original size:32 final size:33
Alignment explanation
Indices: 88562--88646 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
88552 GTGTGCGTGA
* *
88562 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
88595 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
88627 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
88647 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:88773 original size:33 final size:33
Alignment explanation
Indices: 88731--88921 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
88721 TTGTGCGTGA
*
88731 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
88764 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
88796 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
88836 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
88870 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
88902 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
88922 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:88805 original size:65 final size:66
Alignment explanation
Indices: 88731--88921 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
88721 TTGTGCGTGA
*
88731 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
88796 -
66 G
* * * * * **
88796 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
88861 AGGCGGGTG
58 AGACGGGTG
* *
88870 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
88922 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:88848 original size:106 final size:106
Alignment explanation
Indices: 88723--88943 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
88713 CAGGCCGCTT
*
88723 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
88788 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
88829 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
88894 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
88935 GTGCGGGAG
1 GTGCGGGAG
88944 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:89325 original size:11 final size:11
Alignment explanation
Indices: 89311--89342 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
89301 TCCCGGTGGT
89311 GCTCCGGCGAC
1 GCTCCGGCGAC
*
89322 GCTCCGGCGAT
1 GCTCCGGCGAC
89333 GCTCCGGCGA
1 GCTCCGGCGA
89343 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Done.