Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009471.1 Hibiscus syriacus cultivar Beakdansim tig00114144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66572
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Found at i:1873 original size:32 final size:32
Alignment explanation
Indices: 1814--1945 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
1804 GCCTGGGTTG
* *
1814 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1845 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
1877 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
1909 CCGAGGCCACCC-CCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
1941 CCGAG
1 CCGAG
1946 CCTCACGCAC
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
31 14 0.16
32 70 0.78
33 6 0.07
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:2037 original size:31 final size:32
Alignment explanation
Indices: 2002--2105 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
1992 GCCTGGGTTG
2002 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
2033 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
2064 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
2096 CCGAGG-ACCC
1 CCGAGGCACCC
2106 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:2076 original size:62 final size:62
Alignment explanation
Indices: 1980--2112 Score: 241
Period size: 63 Copynumber: 2.1 Consensus size: 62
1970 GTGCGGCACT
*
1980 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
2041 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
2104 CCCGCACCC
1 CCCGCACCC
2113 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
61 16 0.23
62 20 0.29
63 33 0.48
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:2201 original size:32 final size:32
Alignment explanation
Indices: 2159--2291 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
2149 CCTGGGGTTG
* *
2159 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
2191 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
2223 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
2255 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
2287 CCGAG
1 CCGAG
2292 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:2278 original size:64 final size:64
Alignment explanation
Indices: 2159--2424 Score: 211
Period size: 64 Copynumber: 4.0 Consensus size: 64
2149 CCTGGGGTTG
* * * * * *
2159 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGCCACCCGCCTGGGATTGCCGATGGTGA
2223 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA-GCCACCCGCCTGGGATTGCCGATGGTGA
* * * * * * *** *
2287 CCGAGCCTCACGCACCAACG-CTCGGTTCTTCGGCA--CT-CCCTCA-CCAATGGCCTGGGGTTG
1 CCGAG----A--CACC--CGTCTGGGTT-TGCCG-ATGGTGACC-GAGCCACCCGCCTGGGATTG
2347 CCGATGGTGA
55 CCGATGGTGA
* *
2357 CCGAGACACCCGTATGGTTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA-GCCACCCGCCTGGGATTGCCGATGGTGA
2422 CCG
1 CCG
2425 GGGCTCACGC
Statistics
Matches: 157, Mismatches: 26, Indels: 37
0.71 0.12 0.17
Matches are distributed among these distances:
61 1 0.01
62 5 0.03
63 6 0.04
64 57 0.36
65 38 0.24
66 1 0.01
68 1 0.01
69 10 0.06
70 24 0.15
71 8 0.05
72 5 0.03
73 1 0.01
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (64 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGCCACCCGCCTGGGATTGCCGATGGTGA
Found at i:2413 original size:33 final size:32
Alignment explanation
Indices: 2336--2424 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
2326 CTCACCAATG
*
2336 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
2368 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
2401 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
2425 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:10746 original size:95 final size:94
Alignment explanation
Indices: 10592--10977 Score: 370
Period size: 95 Copynumber: 4.1 Consensus size: 94
10582 TGCGAGGCTG
* ** *
10592 CCGCACCCAGCGCTC-GTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
10656 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
10686 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
10751 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
10780 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
10842 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
10877 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
10941 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
10970 CCGCACCC
1 CCGCACCC
10978 GTGGCCTGGG
Statistics
Matches: 220, Mismatches: 59, Indels: 26
0.72 0.19 0.09
Matches are distributed among these distances:
93 25 0.11
94 63 0.29
95 85 0.39
96 24 0.11
97 23 0.10
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:10799 original size:32 final size:32
Alignment explanation
Indices: 10740--10872 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
10730 CCTGGGGTTG
* *
10740 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
10771 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
10803 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
10835 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
10868 CCGAG
1 CCGAG
10873 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:10860 original size:65 final size:63
Alignment explanation
Indices: 10740--10872 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
10730 CCTGGGGTTG
* * * * *
10740 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
10803 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
10868 CCGAG
1 CCGAG
10873 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:10965 original size:31 final size:31
Alignment explanation
Indices: 10930--11031 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
10920 CCTGGGGTTG
10930 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** *
10961 CCGAGGCCCCCG-CACCCGTGGCC--TGGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCCGAT-GG-TGA
10991 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
11022 CCGAGG-ACCC
1 CCGAGGCACCC
11032 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
29 1 0.02
30 25 0.46
31 27 0.50
32 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.39, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:11003 original size:61 final size:62
Alignment explanation
Indices: 10907--11038 Score: 248
Period size: 61 Copynumber: 2.1 Consensus size: 62
10897 GTGCGGCACT
*
10907 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
10969 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
11030 CCCGCACCC
1 CCCGCACCC
11039 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 53 0.77
62 16 0.23
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:11037 original size:154 final size:156
Alignment explanation
Indices: 10835--11119 Score: 445
Period size: 154 Copynumber: 1.8 Consensus size: 156
10825 CCAATGGTGA
*
10835 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA-CCAACGCTCGGTTCTGT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCCAACGCTCGGCTCTGT
* * *
10899 GCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCG
66 -CCGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCG
10964 AGGCCCCCGCACCCGTGGCCTGGGTTG
130 AGGCCCCCGCACCCGTGGCCTGGGTTG
* * *
10991 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCACCCAACGCTCGGCTCT
11052 GTCCGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACC
64 GTCCGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACC
11117 GAG
129 GAG
11120 ACACCCGTCT
Statistics
Matches: 119, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
154 87 0.73
155 24 0.20
156 8 0.07
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (156 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCCAACGCTCGGCTCTGT
CCGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGCCTGGGTTG
Found at i:11143 original size:32 final size:32
Alignment explanation
Indices: 11084--11214 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
11074 CCTGGGGTTG
* *
11084 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
11115 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
11147 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
11179 CCGAGGCCACCCGCCT-GG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
11210 CCGAG
1 CCGAG
11215 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
30 1 0.01
31 30 0.32
32 54 0.57
33 9 0.10
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:11201 original size:63 final size:63
Alignment explanation
Indices: 11084--11214 Score: 194
Period size: 63 Copynumber: 2.1 Consensus size: 63
11074 CCTGGGGTTG
* *
11084 CCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGCCTGGGTTTGCCGATGGTGA
* *
11147 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCT-GG-TTGCCGATGGTGA
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGA-GACACCCGCCTGGGTTTGCCGATGGTGA
11210 CCGAG
1 CCGAG
11215 CCTCACGCAC
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
63 31 0.50
64 22 0.35
65 9 0.15
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGCCTGGGTTTGCCGATGGTGA
Found at i:11338 original size:33 final size:32
Alignment explanation
Indices: 11261--11349 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
11251 CTCACCAATG
*
11261 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
11293 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
11326 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
11350 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:19691 original size:95 final size:94
Alignment explanation
Indices: 19536--19923 Score: 372
Period size: 95 Copynumber: 4.1 Consensus size: 94
19526 TGCGAGGCTG
* ** *
19536 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
19601 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
19631 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
19696 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
19725 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
19787 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
19822 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
19886 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTC-GGGGTTGCCGATGGTGACCGAGGCCC
19916 CCGCACCC
1 CCGCACCC
19924 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 60, Indels: 24
0.72 0.20 0.08
Matches are distributed among these distances:
94 70 0.32
95 104 0.47
96 24 0.11
97 23 0.10
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:19744 original size:32 final size:32
Alignment explanation
Indices: 19685--19817 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
19675 CCTGGGGTTG
* *
19685 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
19716 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
19748 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
19780 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
19813 CCGAG
1 CCGAG
19818 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:19805 original size:65 final size:63
Alignment explanation
Indices: 19685--19817 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
19675 CCTGGGGTTG
* * * * *
19685 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
19748 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
19813 CCGAG
1 CCGAG
19818 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:19930 original size:63 final size:62
Alignment explanation
Indices: 19852--19985 Score: 250
Period size: 63 Copynumber: 2.1 Consensus size: 62
19842 GTGCGGCACT
*
19852 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGAC
19915 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
19977 CCCGCACCC
1 CCCGCACCC
19986 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 33 0.47
63 37 0.53
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:19944 original size:31 final size:31
Alignment explanation
Indices: 19852--19949 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
19842 GTGCGGCACT
19852 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
19883 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
19915 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
19946 CCCG
1 CCCG
19950 TCGGGGTTGC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:19950 original size:190 final size:190
Alignment explanation
Indices: 19609--19974 Score: 510
Period size: 190 Copynumber: 1.9 Consensus size: 190
19599 CCGTCGGGTG
* *
19609 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
19674 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGC
66 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
* *
19739 CGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 CGAGGGTGACCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
19800 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
19863 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-T
65 GGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTT
* * *
19926 GGCCTG-GGGTTG-CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGG
128 GGCC-GAGGG-TGACCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGG
19975 ACCCCGCACC
Statistics
Matches: 156, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
189 20 0.13
190 83 0.53
191 53 0.34
ACGTcount: A:0.13, C:0.35, G:0.36, T:0.17
Consensus pattern (190 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
CGAGGGTGACCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:19973 original size:31 final size:32
Alignment explanation
Indices: 19875--19978 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
19865 CCTGGGGTTG
*
19875 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
19907 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
19938 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
19969 CCGAGG-ACCC
1 CCGAGGCACCC
19979 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 7 0.13
31 32 0.59
32 15 0.28
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:19973 original size:94 final size:96
Alignment explanation
Indices: 19875--20106 Score: 242
Period size: 94 Copynumber: 2.4 Consensus size: 96
19865 CCTGGGGTTG
* * *
19875 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAG-GCCCCCGCACCCGTGGCCTGGGGTTGC
1 CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGGTTGC
*
19939 CGAGGCACCCGTC-GGGGTTGCCGATGGTGA
66 CGAGCCACCCGTCGGGGGTTGCCGATGGTGA
* *** * * * * *
19969 CCGAGG-ACCCCGCACCCAACTCT-CGGCT-CTGTCCG-GAACTCCCGCACCCGTGGCCTGGGGT
1 CCGAGGCA-CCCG-TCCGGGCT-TGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGGT
20030 TGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 TGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
* * *
20064 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCC
1 CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGA-ACCC
20107 GTCTGGGTTT
Statistics
Matches: 103, Mismatches: 25, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
93 3 0.03
94 57 0.55
95 36 0.35
96 4 0.04
97 3 0.03
ACGTcount: A:0.13, C:0.36, G:0.36, T:0.16
Consensus pattern (96 bp):
CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGGTTGC
CGAGCCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:20015 original size:157 final size:158
Alignment explanation
Indices: 19780--20068 Score: 460
Period size: 157 Copynumber: 1.8 Consensus size: 158
19770 CCAATGGTGA
* *
19780 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
19845 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
19910 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
19938 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
19999 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
20064 CCGAG
128 CCGAG
20069 ACACCCGTCT
Statistics
Matches: 121, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
156 24 0.20
157 89 0.74
158 8 0.07
ACGTcount: A:0.12, C:0.37, G:0.36, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:20074 original size:32 final size:32
Alignment explanation
Indices: 20032--20164 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
20022 CCTGGGGTTG
* *
20032 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
20064 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
20096 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
20128 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
20160 CCGAG
1 CCGAG
20165 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:20215 original size:347 final size:348
Alignment explanation
Indices: 19567--20225 Score: 1187
Period size: 347 Copynumber: 1.9 Consensus size: 348
19557 GTGCGGCACT
*
19567 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
* * *
19632 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
19697 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
131 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
19762 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
196 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
**
19827 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG
261 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGG
19892 GGTTGCCGATGGTGACCGAGGCC
326 GGTTGCCGATGGTGACCGAGGCC
** *
19915 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG-GTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
19979 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
20044 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
131 TC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
* *
20109 CTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGC
195 CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
*
20173 ACCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
260 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
20226 TGGTGACCGA
Statistics
Matches: 298, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
347 163 0.55
348 135 0.45
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (348 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGG
GGTTGCCGATGGTGACCGAGGCC
Found at i:20288 original size:33 final size:32
Alignment explanation
Indices: 20211--20299 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
20201 CTCACCAATG
*
20211 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
20243 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
20276 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
20300 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:28669 original size:32 final size:32
Alignment explanation
Indices: 28633--28766 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
28623 CCTGGGGTTG
* * *
28633 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
28665 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
28697 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
28729 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
28762 CCGAG
1 CCGAG
28767 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:28860 original size:32 final size:32
Alignment explanation
Indices: 28824--28928 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
28814 CCTGGGGTTG
28824 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
28856 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
28887 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
28919 CCGAGG-ACCC
1 CCGAGGCACCC
28929 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:28879 original size:63 final size:63
Alignment explanation
Indices: 28801--28935 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
28791 GTGCGGCACT
*
28801 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
28864 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
28927 CCCGCACCC
1 CCCGCACCC
28936 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:28893 original size:31 final size:31
Alignment explanation
Indices: 28801--28898 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
28791 GTGCGGCACT
28801 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
28832 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
28864 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
28895 CCCG
1 CCCG
28899 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:29041 original size:32 final size:32
Alignment explanation
Indices: 28982--29113 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
28972 CCTGGGGTTG
* *
28982 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
29013 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
29045 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
29077 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
29109 CCGAG
1 CCGAG
29114 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:29049 original size:158 final size:159
Alignment explanation
Indices: 28665--29084 Score: 532
Period size: 158 Copynumber: 2.7 Consensus size: 159
28655 CCGATGGTGA
* * * *
28665 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * *
28730 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGAGG-CACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
28794 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
28824 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * *
28886 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
28948 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
28982 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* *
29046 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
29085 ACCCGCCTGG
Statistics
Matches: 221, Mismatches: 30, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
157 64 0.29
158 114 0.52
159 43 0.19
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:29123 original size:158 final size:156
Alignment explanation
Indices: 28665--29247 Score: 443
Period size: 158 Copynumber: 3.6 Consensus size: 156
28655 CCGATGGTGA
* * * * *
28665 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *
28730 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG-
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC-CACCCACCAAAGTTCGG--ATGTGC
28794 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGC-CTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
28824 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * * * * *
28886 G-CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-CCGCACCCAACTCTCGGCTC
63 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG-CCACC-CACCAAAGT-TCGGATG
*
28948 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
125 TG-CCGG-CCTCCCGCACCCGTGGCCTGGGGTTG
28982 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *** *
29046 CGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGTTGCCGATGGTGAC
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTT-CGGAT-GTG-C
* * *
29110 CGAGCCTCACGCACCAACGCTCGGTTCTGTGCG--G
128 CG-GCCTCCCGCACC--CG-T-GG-CCTG-GGGTTG
*** ** * *
29144 CACTCCCTCACCAAT-GGCCTGGGTTGCCGATGGTGACCGAGACACCCGTATGGTTTTGCCGATG
1 C-CGAGC-CACCCGTCGG---GGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATG
29208 GTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
61 GTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
29248 GGCTCACGCA
Statistics
Matches: 337, Mismatches: 56, Indels: 53
0.76 0.13 0.12
Matches are distributed among these distances:
156 6 0.02
157 75 0.22
158 116 0.34
159 42 0.12
160 2 0.01
161 1 0.00
162 4 0.01
163 5 0.01
164 8 0.02
167 50 0.15
168 28 0.08
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (156 bp):
CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTTCGGATGTGCCGG
CCTCCCGCACCCGTGGCCTGGGGTTG
Found at i:29236 original size:33 final size:31
Alignment explanation
Indices: 29160--29247 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
29150 CTCACCAATG
29160 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
29191 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
29224 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
29248 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:37594 original size:95 final size:94
Alignment explanation
Indices: 37439--37825 Score: 379
Period size: 95 Copynumber: 4.1 Consensus size: 94
37429 TGCGAGGCTG
* ** *
37439 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
37504 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
37534 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
37599 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
37628 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
37690 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
37725 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
37789 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
37818 CCGCACCC
1 CCGCACCC
37826 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 59, Indels: 25
0.72 0.19 0.08
Matches are distributed among these distances:
93 25 0.11
94 50 0.23
95 99 0.45
96 24 0.11
97 23 0.10
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:37647 original size:32 final size:32
Alignment explanation
Indices: 37588--37720 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
37578 CCTGGGGTTG
* *
37588 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
37619 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
37651 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
37683 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
37716 CCGAG
1 CCGAG
37721 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:37708 original size:65 final size:63
Alignment explanation
Indices: 37588--37720 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
37578 CCTGGGGTTG
* * * * *
37588 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
37651 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
37716 CCGAG
1 CCGAG
37721 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:37813 original size:31 final size:32
Alignment explanation
Indices: 37778--37881 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
37768 CCTGGGGTTG
37778 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
37809 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
37840 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
37872 CCGAGG-ACCC
1 CCGAGGCACCC
37882 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:37831 original size:62 final size:63
Alignment explanation
Indices: 37755--37888 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
37745 GTGCGGCACT
*
37755 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
37817 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
37880 CCCGCACCC
1 CCCGCACCC
37889 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:37916 original size:157 final size:158
Alignment explanation
Indices: 37683--37971 Score: 451
Period size: 157 Copynumber: 1.8 Consensus size: 158
37673 CCAATGGTGA
* * *
37683 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
37748 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
37812 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
37840 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
37902 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
37967 CCGAG
128 CCGAG
37972 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
156 31 0.26
157 65 0.54
158 24 0.20
ACGTcount: A:0.12, C:0.37, G:0.36, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:37977 original size:32 final size:32
Alignment explanation
Indices: 37935--38067 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
37925 CCTGGGGTTG
* *
37935 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
37967 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
37999 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
38031 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
38063 CCGAG
1 CCGAG
38068 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:38054 original size:64 final size:65
Alignment explanation
Indices: 37935--38201 Score: 217
Period size: 64 Copynumber: 4.0 Consensus size: 65
37925 CCTGGGGTTG
* * * * * *
37935 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
37999 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
* * **** ***
38063 CCGAGCCTCACGCACCAACG-CTCGG-TT-CTG-TGCG-GCACTCCCTCACCAATGGCCTGGG-T
1 CCGAG----A--CACC--CGTCTGGGTTTGCCGATG-GTG-A--CCGAGGCCACCCGCCTGGGAT
38122 TGCCGATGGTGA
54 TGCCGATGGTGA
* *
38134 CCGAGACACCCGTATGGTTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
38199 CCG
1 CCG
38202 GGCTCACGCA
Statistics
Matches: 159, Mismatches: 25, Indels: 37
0.72 0.11 0.17
Matches are distributed among these distances:
63 2 0.01
64 65 0.41
65 34 0.21
66 4 0.03
67 4 0.03
68 4 0.03
69 4 0.03
70 6 0.04
71 34 0.21
72 2 0.01
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (65 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
Found at i:38118 original size:347 final size:346
Alignment explanation
Indices: 37470--38127 Score: 1174
Period size: 347 Copynumber: 1.9 Consensus size: 346
37460 GTGCGGCACT
* *
37470 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
* * *
37535 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
37600 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
131 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
37665 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
196 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
**
37730 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG
261 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCT-GGGTTGCCGAGGCACCCGTCGGG
37795 GTTGCCGATGGTGACCGAGGCC
325 GTTGCCGATGGTGACCGAGGCC
** *
37817 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
37882 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
37947 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
131 TC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
* *
38012 CTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGC
195 CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
*
38076 ACCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGTTGCCGA
260 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGA
38128 TGGTGACCGA
Statistics
Matches: 297, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
346 10 0.03
347 189 0.64
348 98 0.33
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (346 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGAGGCACCCGTCGGGG
TTGCCGATGGTGACCGAGGCC
Found at i:38190 original size:33 final size:31
Alignment explanation
Indices: 38114--38201 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
38104 CTCACCAATG
38114 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
38145 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
38178 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
38202 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:46574 original size:32 final size:32
Alignment explanation
Indices: 46538--46671 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
46528 CCTGGGGTTG
* * *
46538 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
46570 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
46602 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
46634 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
46667 CCGAG
1 CCGAG
46672 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:46764 original size:31 final size:32
Alignment explanation
Indices: 46729--46832 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
46719 CCTGGGGTTG
46729 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
46760 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
46791 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
46823 CCGAGG-ACCC
1 CCGAGGCACCC
46833 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:46782 original size:62 final size:63
Alignment explanation
Indices: 46706--46839 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
46696 GTGCGGCACT
*
46706 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
46768 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
46831 CCCGCACCC
1 CCCGCACCC
46840 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:46945 original size:32 final size:32
Alignment explanation
Indices: 46886--47017 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
46876 CCTGGGGTTG
* *
46886 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
46917 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
46949 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
46981 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
47013 CCGAG
1 CCGAG
47018 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:46968 original size:157 final size:158
Alignment explanation
Indices: 46570--46988 Score: 528
Period size: 157 Copynumber: 2.7 Consensus size: 158
46560 CCGATGGTGA
* * *
46570 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
46635 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
65 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
46699 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
129 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
46729 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTTG
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-TG
* * * *
46791 -CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
63 ACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTCT
46853 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
46886 CCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
*
46951 GAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
46989 ACCCGCCTGG
Statistics
Matches: 220, Mismatches: 30, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
156 32 0.15
157 103 0.47
158 72 0.33
159 13 0.06
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (158 bp):
CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCCG
GAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:47140 original size:33 final size:32
Alignment explanation
Indices: 47063--47151 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
47053 CTCACCAATG
*
47063 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
47095 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
47128 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
47152 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:55482 original size:94 final size:95
Alignment explanation
Indices: 55329--55715 Score: 365
Period size: 94 Copynumber: 4.1 Consensus size: 95
55319 TGCGAGGCTG
* ** *
55329 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
55394 GTC-GGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
55423 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
55488 GTC-GGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
55517 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
55579 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
55614 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
55678 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
55708 CCGCACCC
1 CCGCACCC
55716 GTGGCCTGGG
Statistics
Matches: 220, Mismatches: 61, Indels: 23
0.72 0.20 0.08
Matches are distributed among these distances:
94 134 0.61
95 39 0.18
96 24 0.11
97 23 0.10
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:55536 original size:32 final size:32
Alignment explanation
Indices: 55477--55609 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
55467 CCTGGGGTTG
* *
55477 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
55508 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
55540 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
55572 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
55605 CCGAG
1 CCGAG
55610 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:55597 original size:65 final size:63
Alignment explanation
Indices: 55477--55609 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
55467 CCTGGGGTTG
* * * * *
55477 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
55540 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
55605 CCGAG
1 CCGAG
55610 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:55703 original size:32 final size:32
Alignment explanation
Indices: 55667--55771 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
55657 CCTGGGGTTG
55667 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
55699 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
55730 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
55762 CCGAGG-ACCC
1 CCGAGGCACCC
55772 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:55722 original size:63 final size:63
Alignment explanation
Indices: 55644--55778 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
55634 GTGCGGCACT
*
55644 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
55707 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
55770 CCCGCACCC
1 CCCGCACCC
55779 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:55736 original size:31 final size:31
Alignment explanation
Indices: 55644--55741 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
55634 GTGCGGCACT
55644 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
55675 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
55707 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
55738 CCCG
1 CCCG
55742 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:55742 original size:190 final size:191
Alignment explanation
Indices: 55401--55767 Score: 512
Period size: 190 Copynumber: 1.9 Consensus size: 191
55391 CCCGTCGGTG
* *
55401 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
55466 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGC
66 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
* * *
55531 CGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 CGAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
55592 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
55655 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-T
65 GGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTT
* * *
55718 GGCCTG-GGGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
128 GGCC-GAGGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGG
55768 ACCCCGCACC
Statistics
Matches: 156, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
190 103 0.66
191 53 0.34
ACGTcount: A:0.13, C:0.35, G:0.36, T:0.17
Consensus pattern (191 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
CGAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:55867 original size:32 final size:32
Alignment explanation
Indices: 55825--55957 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
55815 CCTGGGGTTG
* *
55825 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
55857 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
55889 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
55921 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
55953 CCGAG
1 CCGAG
55958 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:55908 original size:158 final size:159
Alignment explanation
Indices: 55508--55928 Score: 532
Period size: 158 Copynumber: 2.7 Consensus size: 159
55498 CCGATGGTGA
* * * *
55508 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
55573 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
55637 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
55667 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * *
55729 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
55791 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
55825 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
55890 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
55929 ACCCGCCTGG
Statistics
Matches: 221, Mismatches: 31, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
157 32 0.14
158 104 0.47
159 85 0.38
ACGTcount: A:0.13, C:0.34, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:56081 original size:33 final size:32
Alignment explanation
Indices: 56004--56092 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
55994 CTCACCAATG
*
56004 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
56036 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
56069 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
56093 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:64405 original size:95 final size:95
Alignment explanation
Indices: 64250--64634 Score: 365
Period size: 95 Copynumber: 4.1 Consensus size: 95
64240 TGCGAGGCTG
* ** *
64250 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
64315 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
64345 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
64410 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * * * * *** * * ***
64440 CCGTCTGGGTTTGC-C-GAT-GGTGACCG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTG-CGGCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
64500 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
64535 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
64598 GTCGGGGGTTGCCGATGGTGACCG-GGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
64627 CCGCACCC
1 CCGCACCC
64635 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 56, Indels: 28
0.72 0.18 0.09
Matches are distributed among these distances:
92 5 0.02
93 44 0.20
94 29 0.13
95 132 0.60
96 11 0.05
ACGTcount: A:0.12, C:0.37, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:64435 original size:32 final size:32
Alignment explanation
Indices: 64399--64530 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
64389 CCTGGGGTTG
* *
64399 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCTGGGTTTGCCGATGGTGA
*
64431 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGGCACCCGTCTGGGTTTGCCGATGGTGA
* *
64463 CCGA--CACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGGCACCCGTCTGGGTTTGCCGATGGTGA
* *
64493 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGG-CACCCGTCTGGGTTTGCCGATGGTGA
64526 CCGAG
1 CCGAG
64531 CCTCACGCAC
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
30 28 0.32
32 33 0.38
33 27 0.31
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGGCACCCGTCTGGGTTTGCCGATGGTGA
Found at i:64471 original size:30 final size:30
Alignment explanation
Indices: 64405--64529 Score: 151
Period size: 30 Copynumber: 4.0 Consensus size: 30
64395 GTTGCCGAGG
* *
64405 CACCCGTCGGGGGTTGCCGATGGTGACCGAGA
1 CACCCGTCTGGGTTTGCCGATGGTGACC--GA
64437 CACCCGTCTGGGTTTGCCGATGGTGACCGA
1 CACCCGTCTGGGTTTGCCGATGGTGACCGA
* *
64467 CACCCGTCTGGCTTTGCCAATGGTGACCGA
1 CACCCGTCTGGGTTTGCCGATGGTGACCGA
* *
64497 GGCCACCCGCCTGGGATTGCCGATGGTGACCGA
1 ---CACCCGTCTGGGTTTGCCGATGGTGACCGA
64530 GCCTCACGCA
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
30 30 0.37
32 26 0.32
33 26 0.32
ACGTcount: A:0.15, C:0.31, G:0.34, T:0.19
Consensus pattern (30 bp):
CACCCGTCTGGGTTTGCCGATGGTGACCGA
Found at i:64640 original size:61 final size:61
Alignment explanation
Indices: 64565--64695 Score: 237
Period size: 61 Copynumber: 2.1 Consensus size: 61
64555 GTGCGGCACT
*
64565 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCG-GGCC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGAC
64626 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
64687 CCCGCACCC
1 CCCGCACCC
64696 AACTCTCGGC
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
60 20 0.29
61 48 0.71
ACGTcount: A:0.10, C:0.38, G:0.38, T:0.14
Consensus pattern (61 bp):
CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:64772 original size:155 final size:155
Alignment explanation
Indices: 64493--64776 Score: 441
Period size: 155 Copynumber: 1.8 Consensus size: 155
64483 CCAATGGTGA
* *
64493 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
64558 CGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGG
66 CGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGG
64623 GCCCCCGCACCCGTGGCCTGGGTTG
131 GCCCCCGCACCCGTGGCCTGGGTTG
* * *
64648 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
64709 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCT-GGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
64774 CCG
127 CCG
64777 AGACACCCGT
Statistics
Matches: 118, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
153 24 0.20
154 46 0.39
155 48 0.41
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (155 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGG
GCCCCCGCACCCGTGGCCTGGGTTG
Found at i:64784 original size:32 final size:32
Alignment explanation
Indices: 64742--64874 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
64732 CCTGGGGTTG
* *
64742 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
64774 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
64806 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
64838 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
64870 CCGAG
1 CCGAG
64875 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:64998 original size:33 final size:32
Alignment explanation
Indices: 64921--65009 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
64911 CTCACCAATG
*
64921 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
64953 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
64986 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
65010 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Done.