genome.fa.s9474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009474.1 Hibiscus syriacus cultivar Beakdansim tig00114195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52849

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124--255	32	4.2	31	90	3	192	18	36	31	14	1.90
122--255	63	2.1	64	87	4	200	17	35	32	14	1.90
306--409	31	3.4	32	66	18	94	13	40	34	11	1.81
301--432	61	2.1	62	95	1	239	13	38	37	10	1.80
187--409	93	2.4	94	72	10	249	16	36	34	12	1.86
467--599	32	4.2	31	85	4	158	18	34	30	15	1.93
14472--14560	33	2.8	32	82	1	115	20	37	28	14	1.92
14607--14739	32	4.2	32	93	1	205	18	36	30	14	1.90
14823--14920	31	3.1	31	66	13	92	13	39	37	9	1.76
14786--14920	63	2.1	63	98	0	261	13	39	37	10	1.79
14671--14897	95	2.4	94	71	10	244	15	37	34	12	1.85
14703--14992	158	1.8	158	89	4	460	15	35	36	12	1.85
14955--15088	32	4.2	32	89	0	187	17	35	30	15	1.92
14849--15237	95	4.1	95	72	9	369	16	33	36	12	1.87
14546--15206	349	1.9	348	95	0	1196	17	34	34	13	1.88
23447--23535	33	2.8	32	82	1	115	20	37	28	14	1.92
23582--23714	32	4.2	32	93	1	205	18	36	30	14	1.90
23798--23895	31	3.1	31	66	13	92	13	39	37	9	1.76
23761--23895	63	2.1	63	98	0	261	13	39	37	10	1.79
23646--23872	95	2.4	94	71	10	244	15	37	34	12	1.85
23678--23967	158	1.8	158	89	4	460	15	35	36	12	1.85
23930--24063	32	4.2	32	89	0	187	17	35	30	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23824--24212	95	4.1	95	72	9	369	16	33	36	12	1.87
23521--24181	349	1.9	348	95	0	1196	17	34	34	13	1.88
37883--37971	33	2.8	32	82	1	115	20	37	28	14	1.92
38018--38150	32	4.2	32	93	1	205	18	36	30	14	1.90
38234--38331	31	3.1	31	66	13	92	13	39	37	9	1.76
38197--38331	63	2.1	63	98	0	261	13	39	37	10	1.79
38082--38308	95	2.4	94	71	10	244	15	37	34	12	1.85
38114--38403	158	1.8	158	89	4	460	15	35	36	12	1.85
38366--38499	32	4.2	32	89	0	187	17	35	30	15	1.92
38260--38648	95	4.1	95	72	9	369	16	33	36	12	1.87
37957--38617	349	1.9	348	95	0	1196	17	34	34	13	1.88
46851--46939	33	2.8	32	82	1	115	20	37	28	14	1.92
46986--47118	32	4.2	32	93	1	205	18	36	30	14	1.90
47205--47297	31	3.0	31	65	14	82	13	40	36	8	1.76
47164--47297	62	2.1	63	97	1	252	13	39	36	10	1.79
47050--47274	94	2.4	93	70	12	224	16	36	34	12	1.86
47332--47465	32	4.2	32	89	0	187	17	35	30	15	1.92
47226--47614	95	4.1	95	72	9	369	16	33	36	12	1.87

Tables:   1

The End!