Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009475.1 Hibiscus syriacus cultivar Beakdansim tig00114196_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22427
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Found at i:11312 original size:30 final size:29
Alignment explanation
Indices: 11276--11354 Score: 95
Period size: 32 Copynumber: 2.6 Consensus size: 29
11266 GCGTGAGCCC
*
11276 CGGTCACCATCGGCAACAGGCGGGTGGCCT
1 CGGTCACCATCGGCAACAGACGGGT-GCCT
* *
11306 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGC--AA-CAGACGGGTGCCT
11338 CGGTCACCATCGGCAAC
1 CGGTCACCATCGGCAAC
11355 CCCAGGCCAT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
29 1 0.02
30 16 0.37
32 19 0.44
33 7 0.16
ACGTcount: A:0.22, C:0.34, G:0.29, T:0.15
Consensus pattern (29 bp):
CGGTCACCATCGGCAACAGACGGGTGCCT
Found at i:11449 original size:32 final size:32
Alignment explanation
Indices: 11408--11539 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
11398 GTGCGTGAGG
* *
11408 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
11440 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
11472 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
11504 CTCGGTCACCATCGGCAACCCCCGAC-GGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
11535 CTCGG
1 CTCGG
11540 CAACCCCAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 9 0.10
32 73 0.78
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:11663 original size:62 final size:62
Alignment explanation
Indices: 11586--11718 Score: 241
Period size: 62 Copynumber: 2.1 Consensus size: 62
11576 GCCGAGAGTT
*
11586 GGGTGCGGGGTCCTCGGTCACCATCGGCAA-CCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCAC
11648 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCAC
11710 GGGTGCGGG
1 GGGTGCGGG
11719 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 62 0.90
63 7 0.10
ACGTcount: A:0.14, C:0.39, G:0.37, T:0.11
Consensus pattern (62 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCAC
Found at i:11684 original size:156 final size:157
Alignment explanation
Indices: 11504--11790 Score: 456
Period size: 156 Copynumber: 1.8 Consensus size: 157
11494 AGACGGGTGT
* *
11504 CTCGGTCACCATCGGCAACCCCCGACGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCC
1 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
11569 GGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAA-CCCCGACGGGT-GCC
66 GCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAATCCCAGACGGGTGGCC
11630 TCGGCAACCCCAGGCCACGGGTGCGGGGGC
128 TCGGCAACCCCAGGCCACGGGTGCGGGGGC
11660 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
1 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* *
11725 GCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCG
66 GCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCG
11790 G
131 G
11791 TCACCATTGG
Statistics
Matches: 120, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
155 24 0.20
156 87 0.73
157 9 0.08
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (157 bp):
CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGACGGGTGGCCTCG
GCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:11827 original size:32 final size:32
Alignment explanation
Indices: 11753--11885 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
11743 GTGCGTGAGG
* *
11753 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
11786 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
11818 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
11850 CTCGGTCACCATCGGC-AACCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
11881 CTCGG
1 CTCGG
11886 CAACCCAGGC
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
31 18 0.20
32 47 0.52
33 26 0.29
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:11833 original size:65 final size:63
Alignment explanation
Indices: 11753--11885 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
11743 GTGCGTGAGG
* * * * *
11753 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GCCTCGGTCACCATCGGC-AACCCAGACGGGTGC
* *
11818 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCAGACGGGTGC
11881 CTCGG
1 CTCGG
11886 CAACCCAGGC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 17 0.28
64 16 0.26
65 28 0.46
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (63 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCAGACGGGTGC
Found at i:11922 original size:345 final size:346
Alignment explanation
Indices: 11347--12002 Score: 1165
Period size: 345 Copynumber: 1.9 Consensus size: 346
11337 TCGGTCACCA
**
11347 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
11412 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
*
11477 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGGCTCGGCA
131 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCA
* * *
11542 ACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCAC
196 ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
11607 CATCGGCAAC-CCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
261 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
11671 TCGGCAACCCCCGACGGTGCC
326 TCGGCAACCCCCGACGGTGCC
*
11692 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
11757 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
11822 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAA-CCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGG
11886 CAA-CCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
194 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
11950 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
259 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
12003 AGTGCCGCAC
Statistics
Matches: 296, Mismatches: 12, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
345 153 0.52
346 143 0.48
ACGTcount: A:0.18, C:0.34, G:0.35, T:0.13
Consensus pattern (346 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCA
ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
TCGGCAACCCCCGACGGTGCC
Found at i:12031 original size:95 final size:93
Alignment explanation
Indices: 11648--12033 Score: 338
Period size: 95 Copynumber: 4.1 Consensus size: 93
11638 CCCAGGCCAC
11648 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAA-CCCCGACGGGTGCCTCGGCAA-CCCAGGCCACGG
11712 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
64 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
* * * * *
11741 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-A-CCATTGGCA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAA-CCCCGACGGGT-GCCTCGG-CAACCCA--GGCC
* *** * ** ** * * *
11803 AAGCCAGACGGGTGT-CTCGGTCACCATCG-GCAAACC
60 ACGGGTG-CGGGAGTGC-CGCACAGAACCGAGC--GCT
** * * *
11839 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCGACGGGTGCCTCGGCAACCCAGGCCACGGGT
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCGACGGGTGCCTCGGCAACCCAGGCCACGGGT
* * *
11903 GCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GCGGGAGTGCCGCACAGAACCGAGCGCT
* **
11931 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAAC-CCCGACGGGTGCCTCGGCAA-CCCAGGCCACGG
11996 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
64 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
12026 GGGTGCGG
1 GGGTGCGG
12034 CAGCCTCGCA
Statistics
Matches: 222, Mismatches: 52, Indels: 36
0.72 0.17 0.12
Matches are distributed among these distances:
92 1 0.00
93 68 0.31
94 35 0.16
95 69 0.31
96 28 0.13
97 20 0.09
98 1 0.00
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (93 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCGACGGGTGCCTCGGCAACCCAGGCCACGGGT
GCGGGAGTGCCGCACAGAACCGAGCGCT
Found at i:20262 original size:33 final size:32
Alignment explanation
Indices: 20222--20310 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
20212 TGCGTGAGCC
*
20222 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
20255 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
20287 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
20311 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:20398 original size:32 final size:32
Alignment explanation
Indices: 20357--20493 Score: 206
Period size: 32 Copynumber: 4.3 Consensus size: 32
20347 GTGCGTGAGG
* *
20357 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
20389 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
20421 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
20453 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
20485 CTCGG-CACC
1 CTCGGTCACC
20494 CAGGCCACGG
Statistics
Matches: 99, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
31 4 0.04
32 83 0.84
33 12 0.12
ACGTcount: A:0.18, C:0.38, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:20580 original size:31 final size:31
Alignment explanation
Indices: 20539--20644 Score: 92
Period size: 31 Copynumber: 3.4 Consensus size: 31
20529 GAGTTGGGTG
20539 CGGGGTCCTCGGTCACCATCGGCAACCCCCGA
1 CGGGG-CCTCGGTCACCATCGGCAACCCCCGA
* * ****
20571 CGGGGCCTCGG-CAACC-CCAGGCCACGGGTG-
1 CGGGGCCTCGGTC-ACCATC-GGCAACCCCCGA
20601 CGGGGGCCTCGGTCACCATCGGCAACCCCCGA
1 C-GGGGCCTCGGTCACCATCGGCAACCCCCGA
20633 CGGGTGCCTCGG
1 CGGG-GCCTCGG
20645 CAACCCCAGG
Statistics
Matches: 55, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
30 3 0.05
31 37 0.67
32 15 0.27
ACGTcount: A:0.13, C:0.42, G:0.35, T:0.10
Consensus pattern (31 bp):
CGGGGCCTCGGTCACCATCGGCAACCCCCGA
Found at i:20631 original size:62 final size:63
Alignment explanation
Indices: 20534--20669 Score: 256
Period size: 62 Copynumber: 2.2 Consensus size: 63
20524 GCCGAGAGTT
*
20534 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGG-GCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
20596 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
20659 GGGTGCGGGGG
1 GGGTGCGGGGG
20670 TGCCGCACAG
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 40 0.56
63 32 0.44
ACGTcount: A:0.13, C:0.39, G:0.38, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:20695 original size:94 final size:94
Alignment explanation
Indices: 20597--20981 Score: 343
Period size: 94 Copynumber: 4.1 Consensus size: 94
20587 CCAGGCCACG
20597 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
20662 TGCGGGGGTGCCGCACAGAACCGAGCGTT
66 TGCGGGAGTGCCGCACAGAACCGAGCGTT
* * * * *** * *
20691 GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAAA
1 GGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCAC
*** ** ** * ***
20754 GCCAGAC-GG-GTGCTCGGTCACCATCG-GCAAAC
63 GGGTG-CGGGAGTGC-CGCACAGAACCGAGC-GTT
*** * *
20786 CCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGG-CACGG
1 GGTG-CGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
20850 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
65 GTGCGGGAGTGCCGCACAGAACCGAGCGTT
* * **
20880 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAA-CCCAGTCCATTG
1 -GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
20944 GTGCGGGAGTGCCGCACAGAACCGAGCGCTG
65 GTGCGGGAGTGCCGCACAGAACCGAGCG-TT
20975 GGTGCGG
1 GGTGCGG
20982 CAGCCTCGCA
Statistics
Matches: 218, Mismatches: 58, Indels: 30
0.71 0.19 0.10
Matches are distributed among these distances:
93 6 0.03
94 131 0.60
95 50 0.23
96 31 0.14
ACGTcount: A:0.17, C:0.34, G:0.37, T:0.13
Consensus pattern (94 bp):
GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
TGCGGGAGTGCCGCACAGAACCGAGCGTT
Found at i:20807 original size:32 final size:32
Alignment explanation
Indices: 20702--20834 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
20692 GTGCGTGAGG
* *
20702 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* *
20735 CTCGGTCACCATTGGCAAAGCCAGACGGGTG-
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
20766 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
20798 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
20830 CTCGG
1 CTCGG
20835 CAACCCCAGG
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 29 0.32
32 35 0.39
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Done.