genome.fa.s9477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009477.1 Hibiscus syriacus cultivar Beakdansim tig00114328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42098

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4242--4328	33	2.7	31	80	7	104	19	37	27	14	1.91
4375--4505	31	4.2	32	90	4	187	18	37	29	14	1.90
4373--4505	63	2.1	63	86	5	189	18	36	30	14	1.90
4552--4685	63	2.1	62	97	1	250	13	39	36	10	1.79
4438--4662	95	2.4	94	70	11	233	16	37	34	12	1.86
4563--4924	188	1.9	188	83	7	477	17	36	33	12	1.88
4723--4849	31	4.0	32	84	5	152	18	36	29	15	1.92
4815--4995	92	2.0	92	90	2	283	17	35	34	12	1.87
13034--13121	31	2.8	31	80	3	104	20	37	27	14	1.92
13034--13277	64	3.8	62	69	21	187	20	34	29	15	1.94
13165--13296	32	4.2	32	94	0	212	18	37	30	14	1.90
13343--13473	61	2.1	62	97	1	246	13	40	35	10	1.80
13508--13639	63	2.1	64	84	4	169	18	36	29	15	1.92
13508--13639	32	4.2	31	88	1	165	18	36	29	15	1.92
13107--13741	343	1.9	340	93	3	1098	17	35	33	13	1.89
21867--22129	32	8.1	31	71	20	191	19	34	31	14	1.92
22176--22307	61	2.1	62	95	4	241	13	40	35	10	1.79
22336--22470	32	4.3	32	84	6	145	17	35	30	16	1.92
22239--22618	95	4.1	93	70	12	280	17	34	35	13	1.88
21940--22587	340	1.9	341	92	3	1083	17	34	34	13	1.89
30726--30814	33	2.8	31	79	5	97	20	38	26	14	1.91
30863--30989	32	4.0	32	89	5	179	18	37	29	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30858--30989	63	2.1	63	87	4	196	18	37	30	14	1.90
31041--31144	31	3.4	31	65	13	88	13	42	32	11	1.80
31036--31167	63	2.1	62	95	2	239	13	40	35	10	1.79
30954--31239	156	1.8	157	87	5	429	15	36	35	12	1.85
30922--31144	93	2.4	92	70	10	227	16	37	33	12	1.86
31071--31173	32	3.3	31	67	14	93	13	39	36	9	1.78
31202--31334	32	4.2	32	87	2	178	18	36	30	15	1.92
31202--31334	63	2.1	65	85	2	180	18	36	30	15	1.92
31097--31470	95	3.9	95	71	11	343	17	34	35	12	1.88
39566--39653	31	2.8	31	80	3	104	20	37	27	14	1.92
39698--39821	30	4.1	31	83	13	152	19	39	26	14	1.90
39696--39822	59	2.1	62	82	8	165	18	38	28	14	1.90
39869--39996	62	2.0	63	98	1	249	14	40	35	10	1.79
39880--40240	186	1.9	189	84	8	488	17	36	33	12	1.87
40038--40165	32	4.0	32	85	5	170	18	35	30	14	1.91
40038--40158	30	3.9	30	83	7	143	19	35	29	14	1.92
40038--40165	62	2.0	63	84	4	168	18	35	30	14	1.91
39932--40313	94	4.1	94	71	12	336	17	34	35	12	1.87

Tables:   1

The End!