Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009478.1 Hibiscus syriacus cultivar Beakdansim tig00114333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47394
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Found at i:2920 original size:31 final size:31
Alignment explanation
Indices: 2879--3102 Score: 123
Period size: 32 Copynumber: 6.8 Consensus size: 31
2869 CACCAATGGC
*
2879 CCGGGGTTGCCGATGGTGACCGAGACACCCG
1 CCGGGATTGCCGATGGTGACCGAGACACCCG
* * *
2910 TCGGGTTTGCCGATGGTGACCGAGGCCACCCG
1 CCGGGATTGCCGATGGTGACCGA-GACACCCG
* * * *
2942 CCTGGGACTGCCGATGGTGACCGAGGCTCACG
1 CC-GGGATTGCCGATGGTGACCGAGACACCCG
* *
2974 CACAAGGG---GCCTGATGGTGACCGAGGCTCCCG
1 C-C--GGGATTGCC-GATGGTGACCGAGACACCCG
**
3006 CACCAATGGCCCGGGGTGCCGATGGTGACCGAGACACCCG
1 --CC----G---GGATTGCCGATGGTGACCGAGACACCCG
* * *
3046 TCTGGGTTTGCCGATGGTGACCGAGGCCACCCG
1 -CCGGGATTGCCGATGGTGACCGA-GACACCCG
3079 CCTGGGATTG-CGATGGTGACCGAG
1 CC-GGGATTGCCGATGGTGACCGAG
3103 GCTCACGCAC
Statistics
Matches: 154, Mismatches: 22, Indels: 34
0.73 0.10 0.16
Matches are distributed among these distances:
31 25 0.16
32 65 0.42
33 34 0.22
34 4 0.03
35 2 0.01
38 2 0.01
39 1 0.01
40 18 0.12
41 3 0.02
ACGTcount: A:0.16, C:0.31, G:0.38, T:0.16
Consensus pattern (31 bp):
CCGGGATTGCCGATGGTGACCGAGACACCCG
Found at i:3044 original size:136 final size:136
Alignment explanation
Indices: 2862--3146 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 136
2852 TCTGTGCGGC
2862 ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTC-GGGTTTGCCGATGG
1 ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
2926 TGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
66 TGACCGAGGCCACCCGCCTGGGACTG-CGATGGTGACCGAGGCTCACGCACAA-GGGCCTGATGG
2991 TGACCGAG
129 TGACCGAG
*
2999 GCTCCCGCACCAATGGCCCGGGG-TGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
1 ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
*
3063 TGACCGAGGCCACCCGCCTGGGATTGCGATGGTGACCGAGGCTCACGCACAAGGGCCTGATGGTG
66 TGACCGAGGCCACCCGCCTGGGACTGCGATGGTGACCGAGGCTCACGCACAAGGGCCTGATGGTG
3128 ACCGAG
131 ACCGAG
3134 ACTCCCGCACCAA
1 ACTCCCGCACCAA
3147 CGCTCGGTTC
Statistics
Matches: 144, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
135 31 0.22
136 52 0.36
137 61 0.42
ACGTcount: A:0.18, C:0.33, G:0.35, T:0.15
Consensus pattern (136 bp):
ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
TGACCGAGGCCACCCGCCTGGGACTGCGATGGTGACCGAGGCTCACGCACAAGGGCCTGATGGTG
ACCGAG
Found at i:3098 original size:104 final size:105
Alignment explanation
Indices: 2917--3112 Score: 256
Period size: 104 Copynumber: 1.9 Consensus size: 105
2907 CCGTCGGGTT
* *
2917 TGCCGATGGTGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGG
1 TGCCGATGGTGACCGAGGACACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACCCACAAGGG
*
2982 GCCTGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
66 GCCTGATGGTGACCGAGGCTCACGCACCAATGGCCCGGGG
* ** * **
3022 TGCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGC-CACCCGCCTGGG
1 TGCCGATGGTGACCGAGGACACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACCCACAAGGG
3085 ATTG-C-GATGGTGACCGAGGCTCACGCAC
66 ---GCCTGATGGTGACCGAGGCTCACGCAC
3113 AAGGGCCTGA
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
103 8 0.10
104 53 0.67
105 17 0.22
106 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.36, T:0.15
Consensus pattern (105 bp):
TGCCGATGGTGACCGAGGACACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACCCACAAGGG
GCCTGATGGTGACCGAGGCTCACGCACCAATGGCCCGGGG
Found at i:3103 original size:32 final size:33
Alignment explanation
Indices: 3022--3104 Score: 125
Period size: 32 Copynumber: 2.6 Consensus size: 33
3012 TGGCCCGGGG
* * *
3022 TGCCGATGGTGACCGA-GACACCCGTCTGGGTT
1 TGCCGATGGTGACCGAGGCCACCCGCCTGGGAT
3054 TGCCGATGGTGACCGAGGCCACCCGCCTGGGAT
1 TGCCGATGGTGACCGAGGCCACCCGCCTGGGAT
3087 TG-CGATGGTGACCGAGGC
1 TGCCGATGGTGACCGAGGC
3105 TCACGCACAA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
32 32 0.68
33 15 0.32
ACGTcount: A:0.16, C:0.29, G:0.37, T:0.18
Consensus pattern (33 bp):
TGCCGATGGTGACCGAGGCCACCCGCCTGGGAT
Found at i:3196 original size:165 final size:166
Alignment explanation
Indices: 3000--3568 Score: 888
Period size: 165 Copynumber: 3.4 Consensus size: 166
2990 GTGACCGAGG
3000 CTCCCGCACCAATGGCCCGGGG-TGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
3064 GACCGAGGCCACCCGCCTGGGATTGCGATGGTGACCGAGGCTCACGCACAAGGGCCTGATGGTGA
65 GACCGAGGCCACCCGCCTAGGATTGCGATGGTGACCGAGGCTCACGCACAGGGGCCTGATGGTGA
*
3129 CCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
130 CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
3166 CTCCCGCA-CAATGGCCCGGGGTTG-CGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
3229 GACCGAGGCCA-CCGCC-AGGATTGCCGATGGTG-CCGAGG-TCACGCACACGGGGGGCCTGATG
65 GACCGAGGCCACCCGCCTAGGATTG-CGATGGTGACCGAGGCTCACGCACA---GGGGCCTGATG
* *
3290 GTGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
126 GTGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
*
3331 CTCCCGCACCAATGGCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGTCGATGGTG
1 CTCCCGCACCAATGGCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
* * * *
3396 A-CGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACCGGGGGCCTGATGGTG
66 ACCGAGGCCACCCGCCTAGGATT-GCGATGGTGACCGAGGCTCACGCA-CAGGGGCCTGATGGTG
3460 A-CGAGGCT-CCGCACCAACGCTCGGTTCTGTGCGGCA
129 ACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
3496 CTCCCGCACCAATGGCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
3561 ACCGAGGC
66 ACCGAGGC
3569 ACGCACACGT
Statistics
Matches: 374, Mismatches: 15, Indels: 28
0.90 0.04 0.07
Matches are distributed among these distances:
162 9 0.02
163 12 0.03
164 13 0.03
165 225 0.60
166 74 0.20
167 28 0.07
168 6 0.02
169 6 0.02
170 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.17
Consensus pattern (166 bp):
CTCCCGCACCAATGGCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
ACCGAGGCCACCCGCCTAGGATTGCGATGGTGACCGAGGCTCACGCACAGGGGCCTGATGGTGAC
CGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:3392 original size:32 final size:32
Alignment explanation
Indices: 3355--3433 Score: 88
Period size: 32 Copynumber: 2.5 Consensus size: 32
3345 GCCGGGGTTG
* * *
3355 CCGATGGTGACCGAGACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGACACCCGCCTGGGATTA
* * *
3387 TCGATGGTGA-CGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGA-GACACCCGCCTGGGATTA
3419 CCGATGGTGACCGAG
1 CCGATGGTGACCGAG
3434 GCGCACGCAC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
31 3 0.08
32 32 0.84
33 3 0.08
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (32 bp):
CCGATGGTGACCGAGACACCCGCCTGGGATTA
Found at i:11494 original size:11 final size:11
Alignment explanation
Indices: 11478--11509 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
11468 CGATAATGTC
11478 TCGCCGGAGCG
1 TCGCCGGAGCG
11489 TCGCCGGAGCG
1 TCGCCGGAGCG
11500 TCGCCGGAGC
1 TCGCCGGAGC
11510 ACCACCGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.38, G:0.44, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCG
Found at i:11935 original size:32 final size:32
Alignment explanation
Indices: 11899--12119 Score: 151
Period size: 32 Copynumber: 6.6 Consensus size: 32
11889 TGGCCCGGGG
*
11899 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGA
* *
11931 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGA
* * * * * *
11964 CTGCCGATGGTGACCGAGGCTCACGCACAAGGG-
1 TTGCCGATGGTGACCGAGACACCCG-TC-TGGGA
* * * *
11997 --GCCTGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCC-GATGGTGACCGAGACACCCG------T---CTGGGA
*
12037 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGA
* *
12069 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGA
12102 TTGCCGATGGTGACCGAG
1 TTGCCGATGGTGACCGAG
12120 GCTCACGCAC
Statistics
Matches: 153, Mismatches: 20, Indels: 32
0.75 0.10 0.16
Matches are distributed among these distances:
31 3 0.02
32 63 0.41
33 58 0.38
34 3 0.02
35 1 0.01
39 3 0.02
40 1 0.01
41 18 0.12
42 3 0.02
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGTCTGGGA
Found at i:11962 original size:33 final size:33
Alignment explanation
Indices: 11899--12121 Score: 195
Period size: 33 Copynumber: 6.6 Consensus size: 33
11889 TGGCCCGGGG
* * *
11899 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
11931 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * **
11964 CTGCCGATGGTGACCGAGGCTCACGCACAAGGG-
1 TTGCCGATGGTGACCGAGGC-CACCCGCCTGGGA
* * *
11997 --GCCTGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCC-GATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * *
12037 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
12069 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
12102 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
12122 TCACGCACAA
Statistics
Matches: 155, Mismatches: 22, Indels: 27
0.76 0.11 0.13
Matches are distributed among these distances:
31 3 0.02
32 53 0.34
33 63 0.41
34 8 0.05
35 4 0.03
36 4 0.03
39 4 0.03
40 1 0.01
41 12 0.08
42 3 0.02
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:12005 original size:65 final size:65
Alignment explanation
Indices: 11936--12151 Score: 231
Period size: 65 Copynumber: 3.2 Consensus size: 65
11926 TGGGTTTGCC
*
11936 GATGGTGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
1 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
* * * * * * *
12001 GATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCG-TC-
1 GATGGTGACCGAGG----C-CACC---CGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA
*
12064 TGGGTTTGCC-
58 AGGG---GCCT
12074 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
1 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
12139 GATGGTGACCGAG
1 GATGGTGACCGAG
12152 ACTCCCGCAC
Statistics
Matches: 120, Mismatches: 17, Indels: 28
0.73 0.10 0.17
Matches are distributed among these distances:
64 3 0.03
65 55 0.46
66 1 0.01
67 3 0.03
68 4 0.03
69 2 0.02
70 4 0.03
71 3 0.03
72 1 0.01
73 41 0.34
74 3 0.03
ACGTcount: A:0.18, C:0.31, G:0.37, T:0.15
Consensus pattern (65 bp):
GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
Found at i:12061 original size:138 final size:138
Alignment explanation
Indices: 11880--12164 Score: 552
Period size: 138 Copynumber: 2.1 Consensus size: 138
11870 GTGCGGCACT
11880 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
11945 CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
66 CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
*
12010 CGAGGCTC
131 CGAGACTC
12018 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
12083 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
66 CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
12148 CGAGACTC
131 CGAGACTC
12156 CCGCACCAA
1 CCGCACCAA
12165 CGCTCGGTTC
Statistics
Matches: 145, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 145 1.00
ACGTcount: A:0.18, C:0.32, G:0.35, T:0.15
Consensus pattern (138 bp):
CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
CGAGACTC
Found at i:12207 original size:138 final size:137
Alignment explanation
Indices: 11880--12257 Score: 466
Period size: 138 Copynumber: 2.8 Consensus size: 137
11870 GTGCGGCACT
* * * *
11880 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATCGCCC-GGGTTGCCGATGGTGACCCAGACACCCGCCGGGGTTTGCCGATGGTGAC
*
11945 CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
65 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
*
12010 CGAGGCTC
130 CGAGACTC
* * * *
12018 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATCGCCC-GGGTTGCCGATGGTGACCCAGACACCCGCCGGGGTTTGCCGATGGTGAC
12083 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
65 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
12148 CGAGACTC
130 CGAGACTC
* * * *
12156 CCGCACCAA-CGCTC-GGTT-CTG-TGCG-GCACTCCCG-CACCAATGGCCCGGGG-TTGCCGAT
1 CCGCACCAATCGCCCGGGTTGCCGATG-GTG-AC-CCAGACACC---CG-CCGGGGTTTGCCGAT
* * *
12214 GGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGC
59 GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC
12258 CACCCGCCCA
Statistics
Matches: 220, Mismatches: 13, Indels: 16
0.88 0.05 0.06
Matches are distributed among these distances:
133 3 0.01
134 9 0.04
135 6 0.03
136 32 0.15
137 21 0.10
138 149 0.68
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.16
Consensus pattern (137 bp):
CCGCACCAATCGCCCGGGTTGCCGATGGTGACCCAGACACCCGCCGGGGTTTGCCGATGGTGACC
GAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACC
GAGACTC
Found at i:12214 original size:169 final size:170
Alignment explanation
Indices: 12015--12596 Score: 1033
Period size: 169 Copynumber: 3.4 Consensus size: 170
12005 GTGACCGAGG
12015 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
12080 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
12144 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
12184 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
12249 GACCGAGGCCACCCGCCCAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
12314 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
*
12354 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGTCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
12418 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
12483 TGAACGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
12523 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
12588 GACCGAGGC
66 GACCGAGGC
12597 ACGCACACGT
Statistics
Matches: 394, Mismatches: 17, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
169 275 0.70
170 119 0.30
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:12275 original size:33 final size:33
Alignment explanation
Indices: 12206--12290 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
12196 TGGCCCGGGG
* * ** *
12206 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
12238 TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
12271 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
12291 TCACGCACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 17 0.36
33 30 0.64
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
Found at i:12448 original size:33 final size:33
Alignment explanation
Indices: 12378--12459 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
12368 GCCGGGGTTG
* * * *
12378 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
* *
12410 TCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
12443 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
12460 GCACGCACAC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 13 0.31
33 29 0.69
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:26063 original size:11 final size:11
Alignment explanation
Indices: 26047--26078 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
26037 CGATAATGTC
26047 TCGCCGGAGCG
1 TCGCCGGAGCG
26058 TCGCCGGAGCG
1 TCGCCGGAGCG
26069 TCGCCGGAGC
1 TCGCCGGAGC
26079 ACCACCGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.38, G:0.44, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCG
Found at i:26506 original size:32 final size:32
Alignment explanation
Indices: 26470--26690 Score: 151
Period size: 32 Copynumber: 6.6 Consensus size: 32
26460 TGGCCCGGGG
*
26470 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGA
* *
26502 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGA
* * * * * *
26535 CTGCCGATGGTGACCGAGGCTCACGCACAAGGG-
1 TTGCCGATGGTGACCGAGACACCCG-TC-TGGGA
* * * *
26568 --GCCTGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCC-GATGGTGACCGAGACACCCG------T---CTGGGA
*
26608 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGA
* *
26640 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGA
26673 TTGCCGATGGTGACCGAG
1 TTGCCGATGGTGACCGAG
26691 GCTCACGCAC
Statistics
Matches: 153, Mismatches: 20, Indels: 32
0.75 0.10 0.16
Matches are distributed among these distances:
31 3 0.02
32 63 0.41
33 58 0.38
34 3 0.02
35 1 0.01
39 3 0.02
40 1 0.01
41 18 0.12
42 3 0.02
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGTCTGGGA
Found at i:26533 original size:33 final size:33
Alignment explanation
Indices: 26470--26692 Score: 195
Period size: 33 Copynumber: 6.6 Consensus size: 33
26460 TGGCCCGGGG
* * *
26470 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
26502 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * **
26535 CTGCCGATGGTGACCGAGGCTCACGCACAAGGG-
1 TTGCCGATGGTGACCGAGGC-CACCCGCCTGGGA
* * *
26568 --GCCTGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCC-GATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * *
26608 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
26640 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
26673 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
26693 TCACGCACAA
Statistics
Matches: 155, Mismatches: 22, Indels: 27
0.76 0.11 0.13
Matches are distributed among these distances:
31 3 0.02
32 53 0.34
33 63 0.41
34 8 0.05
35 4 0.03
36 4 0.03
39 4 0.03
40 1 0.01
41 12 0.08
42 3 0.02
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:26576 original size:65 final size:65
Alignment explanation
Indices: 26507--26722 Score: 231
Period size: 65 Copynumber: 3.2 Consensus size: 65
26497 TGGGTTTGCC
*
26507 GATGGTGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
1 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
* * * * * * *
26572 GATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCG-TC-
1 GATGGTGACCGAGG----C-CACC---CGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA
*
26635 TGGGTTTGCC-
58 AGGG---GCCT
26645 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
1 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
26710 GATGGTGACCGAG
1 GATGGTGACCGAG
26723 ACTCCCGCAC
Statistics
Matches: 120, Mismatches: 17, Indels: 28
0.73 0.10 0.17
Matches are distributed among these distances:
64 3 0.03
65 55 0.46
66 1 0.01
67 3 0.03
68 4 0.03
69 2 0.02
70 4 0.03
71 3 0.03
72 1 0.01
73 41 0.34
74 3 0.03
ACGTcount: A:0.18, C:0.31, G:0.37, T:0.15
Consensus pattern (65 bp):
GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
Found at i:26646 original size:138 final size:138
Alignment explanation
Indices: 26447--26735 Score: 560
Period size: 138 Copynumber: 2.1 Consensus size: 138
26437 TCTGTGCGGC
26447 ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
1 ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
26512 TGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
66 TGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
26577 TGACCGAG
131 TGACCGAG
*
26585 GCTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
1 ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
*
26650 TGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
66 TGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
26715 TGACCGAG
131 TGACCGAG
26723 ACTCCCGCACCAA
1 ACTCCCGCACCAA
26736 CGCTCGGTTC
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
138 148 1.00
ACGTcount: A:0.18, C:0.33, G:0.35, T:0.15
Consensus pattern (138 bp):
ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
TGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
TGACCGAG
Found at i:26761 original size:169 final size:170
Alignment explanation
Indices: 26586--27167 Score: 1033
Period size: 169 Copynumber: 3.4 Consensus size: 170
26576 GTGACCGAGG
26586 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
26651 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
26715 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
26755 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
26820 GACCGAGGCCACCCGCCCAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
26885 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
*
26925 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGTCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
26989 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
27054 TGAACGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
27094 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
27159 GACCGAGGC
66 GACCGAGGC
27168 ACGCACACGT
Statistics
Matches: 394, Mismatches: 17, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
169 275 0.70
170 119 0.30
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:26778 original size:138 final size:137
Alignment explanation
Indices: 26447--26828 Score: 474
Period size: 138 Copynumber: 2.8 Consensus size: 137
26437 TCTGTGCGGC
* * * *
26447 ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
1 ACTCCCGCACCAATCGCCC-GGGTTGCCGATGGTGACCCAGACACCCGCCGGGGTTTGCCGATGG
*
26512 TGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
65 TGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
26577 TGACCGAG
130 TGACCGAG
* * * * *
26585 GCTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
1 ACTCCCGCACCAATCGCCC-GGGTTGCCGATGGTGACCCAGACACCCGCCGGGGTTTGCCGATGG
26650 TGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
65 TGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGG
26715 TGACCGAG
130 TGACCGAG
* * * *
26723 ACTCCCGCACCAA-CGCTC-GGTT-CTG-TGCG-GCACTCCCG-CACCAATGGCCCGGGG-TTGC
1 ACTCCCGCACCAATCGCCCGGGTTGCCGATG-GTG-AC-CCAGACACC---CG-CCGGGGTTTGC
* * *
26781 CGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGC
59 CGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC
26829 CACCCGCCCA
Statistics
Matches: 223, Mismatches: 14, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
133 3 0.01
134 9 0.04
135 6 0.03
136 32 0.14
137 21 0.09
138 152 0.68
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.16
Consensus pattern (137 bp):
ACTCCCGCACCAATCGCCCGGGTTGCCGATGGTGACCCAGACACCCGCCGGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGT
GACCGAG
Found at i:26846 original size:33 final size:33
Alignment explanation
Indices: 26777--26861 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
26767 TGGCCCGGGG
* * ** *
26777 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
26809 TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
26842 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
26862 TCACGCACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 17 0.36
33 30 0.64
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
Found at i:27019 original size:33 final size:33
Alignment explanation
Indices: 26949--27030 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
26939 GCCGGGGTTG
* * * *
26949 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
* *
26981 TCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
27014 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
27031 GCACGCACAC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 13 0.31
33 29 0.69
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:35536 original size:32 final size:32
Alignment explanation
Indices: 35500--35720 Score: 151
Period size: 32 Copynumber: 6.6 Consensus size: 32
35490 TGGCCCGGGG
*
35500 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGA
* *
35532 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGA
* * * * * *
35565 CTGCCGATGGTGACCGAGGCTCACGCACAAGGG-
1 TTGCCGATGGTGACCGAGACACCCG-TC-TGGGA
* * * *
35598 --GCCTGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCC-GATGGTGACCGAGACACCCG------T---CTGGGA
*
35638 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGA
* *
35670 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGA
35703 TTGCCGATGGTGACCGAG
1 TTGCCGATGGTGACCGAG
35721 GCTCACGCAC
Statistics
Matches: 153, Mismatches: 20, Indels: 32
0.75 0.10 0.16
Matches are distributed among these distances:
31 3 0.02
32 63 0.41
33 58 0.38
34 3 0.02
35 1 0.01
39 3 0.02
40 1 0.01
41 18 0.12
42 3 0.02
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGTCTGGGA
Found at i:35563 original size:33 final size:33
Alignment explanation
Indices: 35500--35722 Score: 195
Period size: 33 Copynumber: 6.6 Consensus size: 33
35490 TGGCCCGGGG
* * *
35500 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
35532 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * **
35565 CTGCCGATGGTGACCGAGGCTCACGCACAAGGG-
1 TTGCCGATGGTGACCGAGGC-CACCCGCCTGGGA
* * *
35598 --GCCTGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCC-GATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * *
35638 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
35670 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
35703 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
35723 TCACGCACAA
Statistics
Matches: 155, Mismatches: 22, Indels: 27
0.76 0.11 0.13
Matches are distributed among these distances:
31 3 0.02
32 53 0.34
33 63 0.41
34 8 0.05
35 4 0.03
36 4 0.03
39 4 0.03
40 1 0.01
41 12 0.08
42 3 0.02
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:35606 original size:65 final size:65
Alignment explanation
Indices: 35537--35752 Score: 231
Period size: 65 Copynumber: 3.2 Consensus size: 65
35527 TGGGTTTGCC
*
35537 GATGGTGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
1 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
* * * * * * *
35602 GATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCG-TC-
1 GATGGTGACCGAGG----C-CACC---CGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA
*
35665 TGGGTTTGCC-
58 AGGG---GCCT
35675 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
1 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
35740 GATGGTGACCGAG
1 GATGGTGACCGAG
35753 ACTCCCGCAC
Statistics
Matches: 120, Mismatches: 17, Indels: 28
0.73 0.10 0.17
Matches are distributed among these distances:
64 3 0.03
65 55 0.46
66 1 0.01
67 3 0.03
68 4 0.03
69 2 0.02
70 4 0.03
71 3 0.03
72 1 0.01
73 41 0.34
74 3 0.03
ACGTcount: A:0.18, C:0.31, G:0.37, T:0.15
Consensus pattern (65 bp):
GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
Found at i:35676 original size:138 final size:138
Alignment explanation
Indices: 35481--35765 Score: 552
Period size: 138 Copynumber: 2.1 Consensus size: 138
35471 TGCGGCACTA
35481 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
35546 CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
66 CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
*
35611 CGAGGCTC
131 CGAGACTC
35619 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
35684 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
66 CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
35749 CGAGACTC
131 CGAGACTC
35757 CCGCACCAA
1 CCGCACCAA
35766 CGCTCGGTTC
Statistics
Matches: 145, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 145 1.00
ACGTcount: A:0.18, C:0.32, G:0.35, T:0.15
Consensus pattern (138 bp):
CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
CGAGACTC
Found at i:35791 original size:169 final size:170
Alignment explanation
Indices: 35616--36197 Score: 1024
Period size: 169 Copynumber: 3.4 Consensus size: 170
35606 GTGACCGAGG
35616 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
35681 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
35745 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
35785 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
35850 GACCGAGGCCACCCGCCCAGGATTGCCGATGGTGTCCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
35915 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
*
35955 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGTCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
36019 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
36084 TGAACGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
36124 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
36189 GACCGAGGC
66 GACCGAGGC
36198 ACGCACACGT
Statistics
Matches: 392, Mismatches: 19, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
169 273 0.70
170 119 0.30
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:35808 original size:138 final size:137
Alignment explanation
Indices: 35481--35858 Score: 466
Period size: 138 Copynumber: 2.8 Consensus size: 137
35471 TGCGGCACTA
* * * *
35481 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATCGCCC-GGGTTGCCGATGGTGACCCAGACACCCGCCGGGGTTTGCCGATGGTGAC
*
35546 CGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
65 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
*
35611 CGAGGCTC
130 CGAGACTC
* * * *
35619 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATCGCCC-GGGTTGCCGATGGTGACCCAGACACCCGCCGGGGTTTGCCGATGGTGAC
35684 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
65 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGAC
35749 CGAGACTC
130 CGAGACTC
* * * *
35757 CCGCACCAA-CGCTC-GGTT-CTG-TGCG-GCACTCCCG-CACCAATGGCCCGGGG-TTGCCGAT
1 CCGCACCAATCGCCCGGGTTGCCGATG-GTG-AC-CCAGACACC---CG-CCGGGGTTTGCCGAT
* * *
35815 GGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGC
59 GGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC
35859 CACCCGCCCA
Statistics
Matches: 220, Mismatches: 13, Indels: 16
0.88 0.05 0.06
Matches are distributed among these distances:
133 3 0.01
134 9 0.04
135 6 0.03
136 32 0.15
137 21 0.10
138 149 0.68
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.16
Consensus pattern (137 bp):
CCGCACCAATCGCCCGGGTTGCCGATGGTGACCCAGACACCCGCCGGGGTTTGCCGATGGTGACC
GAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACC
GAGACTC
Found at i:35876 original size:33 final size:33
Alignment explanation
Indices: 35807--35891 Score: 109
Period size: 33 Copynumber: 2.6 Consensus size: 33
35797 TGGCCCGGGG
* * ** *
35807 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
35839 TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
*
35872 TTGCCGATGGTGTCCGAGGC
1 TTGCCGATGGTGACCGAGGC
35892 TCACGCACAC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 17 0.37
33 29 0.63
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCCAGGA
Found at i:36049 original size:33 final size:33
Alignment explanation
Indices: 35979--36060 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
35969 GCCGGGGTTG
* * * *
35979 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
* *
36011 TCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
36044 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
36061 GCACGCACAC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 13 0.31
33 29 0.69
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:44558 original size:33 final size:33
Alignment explanation
Indices: 44489--44708 Score: 200
Period size: 33 Copynumber: 6.6 Consensus size: 33
44479 TGGCCCGGGG
* * *
44489 TTGCCGATGGTGACCGA-GACA-CCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
44520 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * **
44553 CTGCCGATGGTGACCGAGGCTCACGCACAAGGG-
1 TTGCCGATGGTGACCGAGGC-CACCCGCCTGGGA
* * *
44586 --GCCTGATGGTGACCGAGGCTCCCACCAATGGCCCGGGG
1 TTGCC-GATGGTGACCGAGG---CCACC---CGCCTGGGA
* * *
44624 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
44656 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
44689 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
44709 TCACGCACAA
Statistics
Matches: 154, Mismatches: 21, Indels: 26
0.77 0.10 0.13
Matches are distributed among these distances:
31 20 0.13
32 39 0.25
33 59 0.38
34 11 0.07
35 5 0.03
37 4 0.03
38 1 0.01
39 12 0.08
40 3 0.02
ACGTcount: A:0.16, C:0.30, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:44709 original size:136 final size:135
Alignment explanation
Indices: 44473--44744 Score: 517
Period size: 136 Copynumber: 2.0 Consensus size: 135
44463 GGCACTACCG
44473 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCGTCTGGGTTTGCCGATGGTGACCGAG
1 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCGTCTGGGTTTGCCGATGGTGACCGAG
44538 GCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGAG
66 GCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGAG
*
44603 GCTCC
131 ACTCC
44608 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA
1 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACA-CCGTCTGGGTTTGCCGATGGTGACCGA
*
44673 GGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGA
65 GGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGA
44738 GACTCC
130 GACTCC
44744 C
1 C
44745 GCACCAACGC
Statistics
Matches: 134, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
135 37 0.28
136 97 0.72
ACGTcount: A:0.17, C:0.31, G:0.36, T:0.16
Consensus pattern (135 bp):
CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCGTCTGGGTTTGCCGATGGTGACCGAG
GCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGAG
ACTCC
Found at i:44730 original size:65 final size:65
Alignment explanation
Indices: 44525--44738 Score: 245
Period size: 65 Copynumber: 3.2 Consensus size: 65
44515 TGGGTTTGCC
*
44525 GATGGTGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
1 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
* * * * * * * *
44590 GATGGTGACCGAGGCTCCCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCG-TC-TG
1 GATGGTGACCGAGG---CCACC---CGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAG
44653 GGTTTGCC-
60 GG---GCCT
44661 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
1 GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
44726 GATGGTGACCGAG
1 GATGGTGACCGAG
44739 ACTCCCGCAC
Statistics
Matches: 120, Mismatches: 17, Indels: 24
0.75 0.11 0.15
Matches are distributed among these distances:
64 3 0.03
65 55 0.46
66 1 0.01
67 3 0.03
68 10 0.08
69 3 0.03
70 1 0.01
71 41 0.34
72 3 0.03
ACGTcount: A:0.18, C:0.30, G:0.37, T:0.15
Consensus pattern (65 bp):
GATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCT
Found at i:44796 original size:136 final size:135
Alignment explanation
Indices: 44473--44843 Score: 436
Period size: 136 Copynumber: 2.7 Consensus size: 135
44463 GGCACTACCG
* * * *
44473 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACA-CCGTCTGGGTTTGCCGATGGTGACCGA
1 CACCAATCGCCC-GGGTTGCCGATGGTGACCCAGACACCCGCCCGGGTTTGCCGATGGTGACCGA
*
44537 GGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGA
65 GGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGA
*
44602 GGCTCC
130 GACTCC
* * * *
44608 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA
1 CACCAATCGCCC-GGGTTGCCGATGGTGACCCAGACACCCGCCCGGGTTTGCCGATGGTGACCGA
44673 GGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGA
65 GGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGA
44738 GACTCCC
130 GACT-CC
* * * *
44745 GCACCAA-CGCTC-GGTT-CTG-TGCG-GCACTCCCG-CACCAATGGCCCGGG-TTGCCGATGGT
1 -CACCAATCGCCCGGGTTGCCGATG-GTG-AC-CCAGACACC---CGCCCGGGTTTGCCGATGGT
* * *
44803 GACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGC
59 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC
44844 CACCCCCAGG
Statistics
Matches: 214, Mismatches: 13, Indels: 18
0.87 0.05 0.07
Matches are distributed among these distances:
133 3 0.01
134 9 0.04
135 75 0.35
136 111 0.52
137 10 0.05
138 6 0.03
ACGTcount: A:0.17, C:0.32, G:0.35, T:0.16
Consensus pattern (135 bp):
CACCAATCGCCCGGGTTGCCGATGGTGACCCAGACACCCGCCCGGGTTTGCCGATGGTGACCGAG
GCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGACCGAG
ACTCC
Found at i:44824 original size:31 final size:30
Alignment explanation
Indices: 44789--44872 Score: 96
Period size: 32 Copynumber: 2.7 Consensus size: 30
44779 CCAATGGCCC
* *
44789 GGGTTGCCGATGGTGACCGAGACACCCGTCT
1 GGGTTGCCGATGGTGACCGAGACACCC-CCA
*
44820 GGGTTTGCCGATGGTGACCGAGGCCACCCCCA
1 GGG-TTGCCGATGGTGACCGA-GACACCCCCA
* *
44852 GGATTGCCGATGGTGTCCGAG
1 GGGTTGCCGATGGTGACCGAG
44873 GCTCACGCAC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
30 1 0.02
31 19 0.41
32 20 0.43
33 6 0.13
ACGTcount: A:0.15, C:0.29, G:0.37, T:0.19
Consensus pattern (30 bp):
GGGTTGCCGATGGTGACCGAGACACCCCCA
Found at i:44948 original size:167 final size:170
Alignment explanation
Indices: 44608--45180 Score: 994
Period size: 167 Copynumber: 3.4 Consensus size: 170
44598 CCGAGGCTCC
44608 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA
1 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA
* *
44673 GGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGGGGCCTGATGGTGACCG
66 GGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTGACCG
*
44737 AGACTCCCGCACCAACGCTCGGTTCTGTGCGGCACTCCCG
131 AGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACTCCCG
44777 CACCAATGGCCC-GGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA
1 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA
*
44841 GGCCACCC-CC-AGGATTGCCGATGGTGTCCGAGGCTCACGCACACGGGGGCCTGATGGTGACCG
66 GGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTGACCG
* *
44904 AGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCACTCCCG
131 AGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACTCCCG
*
44944 CACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGTCGATGGTGACCGA
1 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA
* * * *
45008 GGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGGTGAACG
66 GGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTGACCG
45073 AGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACTCCCG
131 AGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACTCCCG
**
45113 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGTGACCGA
1 CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA
45178 GGC
66 GGC
45181 ACGCACACGT
Statistics
Matches: 382, Mismatches: 17, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
166 33 0.09
167 125 0.33
168 62 0.16
169 107 0.28
170 55 0.14
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (170 bp):
CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGA
GGCCACCCGCCTAGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTGACCG
AGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACTCCCG
Found at i:45032 original size:33 final size:33
Alignment explanation
Indices: 44962--45043 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
44952 GCCGGGGTTG
* * * *
44962 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
* *
44994 TCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
45027 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
45044 GCACGCACAC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 13 0.31
33 29 0.69
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:46919 original size:22 final size:23
Alignment explanation
Indices: 46877--46924 Score: 80
Period size: 22 Copynumber: 2.1 Consensus size: 23
46867 CCGCTCGCCG
46877 CGGGAGCAGCTCGAGCAGTGCAC
1 CGGGAGCAGCTCGAGCAGTGCAC
*
46900 CGGGAGCAGC-CGCGCAGTGCAC
1 CGGGAGCAGCTCGAGCAGTGCAC
46922 CGG
1 CGG
46925 CACCCCCGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.19, C:0.33, G:0.42, T:0.06
Consensus pattern (23 bp):
CGGGAGCAGCTCGAGCAGTGCAC
Done.