Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000948.1 Hibiscus syriacus cultivar Beakdansim tig00001896_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104288

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
385--635
92
2.7
92
83
8
316
31
25
13
30
1.93
3059--3789
367
2.0
357
92
3
1196
30
19
18
32
1.96
5769--5832
27
2.4
27
97
2
121
43
9
3
43
1.52
6586--6616
16
2.0
15
93
6
53
51
0
0
48
1.00
7976--8008
2
16.5
2
100
0
66
51
0
0
48
1.00
10746--10804
29
2.0
29
96
0
109
44
16
5
33
1.70
20197--20247
22
2.3
22
82
0
66
43
11
19
25
1.85
21003--21098
31
3.1
31
96
0
165
33
19
19
27
1.96
26310--26348
4
10.2
4
89
10
64
51
23
0
25
1.49
29955--29982
2
14.0
2
100
0
56
50
0
0
50
1.00
30558--30606
25
2.0
25
95
0
89
22
14
18
44
1.85
46205--46365
64
2.5
65
86
7
204
34
16
21
27
1.95
47018--47049
2
16.0
2
100
0
64
50
0
0
50
1.00
47806--48120
149
2.1
149
97
1
596
26
17
21
34
1.95
48088--48132
23
2.0
23
90
0
72
22
26
26
24
2.00
51158--51318
64
2.5
65
84
10
206
34
16
21
27
1.95
52743--53057
149
2.1
149
95
1
569
26
16
21
35
1.94
63149--63214
22
3.0
22
95
4
125
27
25
27
19
1.99
63434--63493
30
2.0
31
86
3
86
35
21
6
36
1.80
63851--64022
67
2.6
68
81
9
194
18
26
26
28
1.98
70061--70127
22
3.0
22
100
0
134
26
26
26
19
1.99
70347--70406
30
2.0
31
86
3
86
35
21
6
36
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70764--70917
68
2.2
69
85
5
197
18
27
25
27
1.98
70764--70939
67
2.6
67
83
8
178
18
27
25
27
1.98
71964--72078
60
1.9
60
82
7
144
26
23
10
39
1.87
71992--72078
20
4.4
19
77
7
77
28
24
9
37
1.86
71992--72118
40
3.2
40
81
5
143
29
23
10
37
1.88
72052--72144
20
4.8
20
75
15
95
30
21
10
37
1.87
72104--72137
18
1.9
18
88
5
52
26
17
8
47
1.77
72273--72310
16
2.5
15
84
12
51
28
5
0
65
1.14
73064--73117
24
2.2
24
86
0
72
22
16
18
42
1.89
73077--73123
24
2.0
24
82
0
58
25
14
19
40
1.90
75698--75732
16
2.3
15
90
5
52
65
11
0
22
1.24
77122--77219
21
4.7
21
91
6
146
24
19
33
22
1.97
77500--77554
21
2.6
21
79
0
56
34
29
16
20
1.94
77624--77676
21
2.5
21
84
0
70
30
33
16
18
1.94
77791--77888
42
2.3
42
85
0
124
19
20
32
27
1.97
79761--79811
22
2.3
22
89
0
75
17
13
45
23
1.84
79976--80015
20
2.0
20
85
0
53
27
20
17
35
1.95
80287--80320
5
6.8
5
93
0
59
2
17
17
61
1.46
85447--85528
36
2.3
36
91
0
137
20
17
21
40
1.91
86032--86110
36
2.2
36
100
0
158
39
10
5
45
1.60
86975--87011
19
2.0
18
94
5
65
59
0
5
35
1.20

Tables:   1

The End!