Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009480.1 Hibiscus syriacus cultivar Beakdansim tig00114450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41668
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Found at i:8060 original size:33 final size:32
Alignment explanation
Indices: 8021--8108 Score: 104
Period size: 33 Copynumber: 2.7 Consensus size: 32
8011 CGTGAGCCCC
*
8021 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCG
1 GTCACCATCGGCAAACCCAGGCGGGT-GCCTCG
* ** *
8054 GTCACCATCGGCAAAAACCATACGGGTGTCTCG
1 GTCACCATCGGC-AAACCCAGGCGGGTGCCTCG
*
8087 GTCACCATCGGCAACCCCAGGC
1 GTCACCATCGGCAAACCCAGGC
8109 CATTGGTGAG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
32 6 0.13
33 29 0.64
34 10 0.22
ACGTcount: A:0.22, C:0.36, G:0.27, T:0.15
Consensus pattern (32 bp):
GTCACCATCGGCAAACCCAGGCGGGTGCCTCG
Found at i:8255 original size:61 final size:61
Alignment explanation
Indices: 8153--8281 Score: 172
Period size: 61 Copynumber: 2.1 Consensus size: 61
8143 TGGTGCGTGA
*
8153 GGCTCGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGTCACCATCGCAAACCCAGACGGGT
1 GGCTC-GTCACCATCGGCAACCCAGACGGGTGGCCTCGTCACCATCGCAAACCCAGACGGGT
* * * *
8215 GTCTCGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGCAACCCCCGACGGGT
1 GGCTCGTCACCATCGGC-AACCCAGACGGGTGGCCTC-GTCACCATCGCAAACCCAGACGGGT
8276 GGCTCG
1 GGCTCG
8282 GCAACCCCAG
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
60 4 0.07
61 43 0.73
62 12 0.20
ACGTcount: A:0.19, C:0.38, G:0.29, T:0.15
Consensus pattern (61 bp):
GGCTCGTCACCATCGGCAACCCAGACGGGTGGCCTCGTCACCATCGCAAACCCAGACGGGT
Found at i:8282 original size:31 final size:32
Alignment explanation
Indices: 8153--8282 Score: 164
Period size: 31 Copynumber: 4.2 Consensus size: 32
8143 TGGTGCGTGA
*
8153 GGCTCGGTCACCATCGGC-AACCCAGGCGGGT
1 GGCTCGGTCACCATCGGCAAACCCAGACGGGT
8184 GGCCTC-GTCACCATC-GCAAACCCAGACGGGT
1 GG-CTCGGTCACCATCGGCAAACCCAGACGGGT
*
8215 GTCTC-GTCACCATCGGCAAACCCAGAC-GGT
1 GGCTCGGTCACCATCGGCAAACCCAGACGGGT
* * *
8245 GTCTCGGTCACCATC-GCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGCAAACCCAGACGGGT
8276 GGCTCGG
1 GGCTCGG
8283 CAACCCCAGC
Statistics
Matches: 89, Mismatches: 5, Indels: 10
0.86 0.05 0.10
Matches are distributed among these distances:
30 32 0.36
31 54 0.61
32 3 0.03
ACGTcount: A:0.18, C:0.38, G:0.29, T:0.15
Consensus pattern (32 bp):
GGCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:8428 original size:62 final size:61
Alignment explanation
Indices: 8337--8457 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 61
8327 TGGGTGCGGT
8337 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
1 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC-ACCCCA-GCCACGGGTGCGGGGG
8400 CCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCACCCCAGCCACGGGTGCGGG
1 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCACCCCAGCCACGGGTGCGGG
8458 TGCCGCACAG
Statistics
Matches: 58, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
60 14 0.24
61 6 0.10
62 24 0.41
63 14 0.24
ACGTcount: A:0.14, C:0.43, G:0.33, T:0.10
Consensus pattern (61 bp):
CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCACCCCAGCCACGGGTGCGGGGG
Found at i:8434 original size:31 final size:30
Alignment explanation
Indices: 8337--8440 Score: 79
Period size: 31 Copynumber: 3.3 Consensus size: 30
8327 TGGGTGCGGT
8337 CCTCGGTCACCATCGGCAACCCCCGACGGGTG
1 CCTCGG-CACCATC-GCAACCCCCGACGGGTG
* ** * *
8369 CCTCGGCAACC--C-CAGGCCACGGGTGCGGGGG
1 CCTCGGC-ACCATCGCA-ACC-CCCG-ACGGGTG
8400 CCTCGGTCACCATCGCAACCCCCGACGGGTG
1 CCTCGG-CACCATCGCAACCCCCGACGGGTG
8431 CCTCGGCACC
1 CCTCGGCACC
8441 CCAGCCACGG
Statistics
Matches: 54, Mismatches: 10, Indels: 18
0.66 0.12 0.22
Matches are distributed among these distances:
28 2 0.04
29 2 0.04
30 7 0.13
31 26 0.48
32 12 0.22
33 3 0.06
34 2 0.04
ACGTcount: A:0.14, C:0.44, G:0.31, T:0.11
Consensus pattern (30 bp):
CCTCGGCACCATCGCAACCCCCGACGGGTG
Found at i:8559 original size:154 final size:155
Alignment explanation
Indices: 8184--8595 Score: 454
Period size: 154 Copynumber: 2.7 Consensus size: 155
8174 CCAGGCGGGT
* * *
8184 GGCCTC-GTCACCATC-GCAAACCCAGACGGGTGT--CTC-GTCACCATCGGCAAACCCAGACGG
1 GGCCTCGGTCACCATCGGCAACCCCAGACGGGTGTGCCTCGGTCACCATAGGCAAAGCCAGACGG
* *
8244 TGTCTCGGTCACCATCGCAACCCCCGACGGGTGGCTCGGCAACCCCAGCCACGGGTGCGGGAGTT
66 TGTCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGC-ACCCCAGCCACGGGTGCGGGAGTG
*
8309 CCGGACAGAGCCGAGAGTTGGGTGCG
130 CCGCACAGAGCCGAGAGTTGGGTGCG
* * ** * * ***
8335 GTCCTCGGTCACCATCGGCAACCCCCGAC-GG-GTGCCTCGG-CAACCCCAGGCCACGGGTG-CG
1 GGCCTCGGTCACCATCGGCAACCCCAGACGGGTGTGCCTCGGTC-ACCATAGGCAAAGCCAGAC-
* *
8396 GGGGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCACCCCAGCCACGGGTGC-GG-GT
64 GGTGTCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCACCCCAGCCACGGGTGCGGGAGT
*
8459 GCCGCACAGA-CCGAGCGTT-GGTGCG
129 GCCGCACAGAGCCGAGAGTTGGGTGCG
* * *
8484 TGAGGCTCGGTCACCATCGGCAATCCCCAGGCGGGTGTGCCTCGGTCACCATTGGCAAAGCCAGA
1 -G-GCCTCGGTCACCATCGGCAA-CCCCAGACGGGTGTGCCTCGGTCACCATAGGCAAAGCCAGA
* * *
8549 CGGTGTCTCGGTCACCATCGCAAACCCAGACGGGTGTCTCGGTCACC
63 CGGTGTCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGG-CACC
8596 ATCGGCAACC
Statistics
Matches: 211, Mismatches: 35, Indels: 26
0.78 0.13 0.10
Matches are distributed among these distances:
149 6 0.03
150 9 0.04
151 35 0.17
152 19 0.09
153 34 0.16
154 102 0.48
155 6 0.03
ACGTcount: A:0.17, C:0.37, G:0.32, T:0.14
Consensus pattern (155 bp):
GGCCTCGGTCACCATCGGCAACCCCAGACGGGTGTGCCTCGGTCACCATAGGCAAAGCCAGACGG
TGTCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCACCCCAGCCACGGGTGCGGGAGTGC
CGCACAGAGCCGAGAGTTGGGTGCG
Found at i:8562 original size:31 final size:31
Alignment explanation
Indices: 8489--8621 Score: 133
Period size: 31 Copynumber: 4.2 Consensus size: 31
8479 GTGCGTGAGG
* * *
8489 CTCGGTCACCATCGGCAATCCCCAGGCGGGTGT
1 CTCGGTCACCATTGGCAA-ACCCAGAC-GGTGT
*
8522 GCCTCGGTCACCATTGGCAAAGCCAGACGGTGT
1 --CTCGGTCACCATTGGCAAACCCAGACGGTGT
*
8555 CTCGGTCACCA-TCGCAAACCCAGACGGGTGT
1 CTCGGTCACCATTGGCAAACCCAGAC-GGTGT
* * * *
8586 CTCGGTCACCATCGGCAACCCCCGACGGTGC
1 CTCGGTCACCATTGGCAAACCCAGACGGTGT
8617 CTCGG
1 CTCGG
8622 CAACCCCGCA
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
30 12 0.14
31 36 0.42
32 10 0.12
33 5 0.06
34 5 0.06
35 17 0.20
ACGTcount: A:0.18, C:0.37, G:0.29, T:0.17
Consensus pattern (31 bp):
CTCGGTCACCATTGGCAAACCCAGACGGTGT
Found at i:8603 original size:62 final size:65
Alignment explanation
Indices: 8489--8621 Score: 173
Period size: 62 Copynumber: 2.1 Consensus size: 65
8479 GTGCGTGAGG
* * * *
8489 CTCGGTCACCATCGGCAATCCCCAGGCGGGTGTGCCTCGGTCACCATTGGCAAAGCCAGACGGTG
1 CTCGGTCACCATCGGCAATACCCAGACGGGTGT-CCTCGGTCACCATCGGCAAACCCAGACGGTG
*
8554 T
65 C
* *
8555 CTCGGTCACCATC-GCAA-ACCCAGACGGGTGT-CTCGGTCACCATCGGCAACCCCCGACGGTGC
1 CTCGGTCACCATCGGCAATACCCAGACGGGTGTCCTCGGTCACCATCGGCAAACCCAGACGGTGC
8617 CTCGG
1 CTCGG
8622 CAACCCCGCA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
62 31 0.52
64 12 0.20
65 4 0.07
66 13 0.22
ACGTcount: A:0.18, C:0.37, G:0.29, T:0.17
Consensus pattern (65 bp):
CTCGGTCACCATCGGCAATACCCAGACGGGTGTCCTCGGTCACCATCGGCAAACCCAGACGGTGC
Found at i:8621 original size:21 final size:21
Alignment explanation
Indices: 8597--8637 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8587 TCGGTCACCA
8597 TCGGCAACCCC-CGACGGTGCC
1 TCGGCAACCCCGC-ACGGTGCC
8618 TCGGCAACCCCGCACGGTGC
1 TCGGCAACCCCGCACGGTGC
8638 GGAGTGCCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.15, C:0.46, G:0.29, T:0.10
Consensus pattern (21 bp):
TCGGCAACCCCGCACGGTGCC
Found at i:16934 original size:32 final size:32
Alignment explanation
Indices: 16893--16979 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 32
16883 GCGTGAGCCC
*
16893 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
16926 C-GTCACCATC-GCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
16956 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
16980 CATTGGTGAG
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
30 4 0.09
31 21 0.49
32 17 0.40
33 1 0.02
ACGTcount: A:0.21, C:0.38, G:0.26, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:17067 original size:32 final size:32
Alignment explanation
Indices: 17026--17157 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
17016 GTGCGTGAGG
* *
17026 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
17058 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
17090 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
17122 CTCGGTCACCATCGGCAACCCCCGAC-GGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
17153 CTCGG
1 CTCGG
17158 CAACCCCAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 9 0.10
32 73 0.78
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:17281 original size:30 final size:31
Alignment explanation
Indices: 17241--17337 Score: 92
Period size: 30 Copynumber: 3.1 Consensus size: 31
17231 CAACCCCCGA
17241 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * ****
17272 CGGG-GCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
17302 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
17334 CGGG
1 CGGG
17338 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
30 16 0.33
31 16 0.33
32 16 0.33
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:17302 original size:62 final size:63
Alignment explanation
Indices: 17204--17337 Score: 261
Period size: 62 Copynumber: 2.1 Consensus size: 63
17194 GCCGAGAGTT
17204 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
17267 GGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
17329 GGGTGCGGG
1 GGGTGCGGG
17338 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
62 61 0.86
63 10 0.14
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:17313 original size:94 final size:93
Alignment explanation
Indices: 17090--17314 Score: 233
Period size: 94 Copynumber: 2.4 Consensus size: 93
17080 AGACGGGTGT
* *
17090 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGGCT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
17155 CGGCAACCCCAGGCCACGGGTGCGGGAG
66 CGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
17183 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGAC-GG
17245 TGCCTCGGCAACCCCAGGCCACGGGTGCGGG-G
61 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
17277 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
17315 CAACCCCAGG
Statistics
Matches: 99, Mismatches: 24, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
92 1 0.01
93 7 0.07
94 51 0.52
95 39 0.39
96 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.34, T:0.12
Consensus pattern (93 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
CGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:17445 original size:32 final size:31
Alignment explanation
Indices: 17372--17501 Score: 163
Period size: 31 Copynumber: 4.2 Consensus size: 31
17362 GTGCGTGAGG
* * *
17372 CTCGGTCACCATCGGCAATCCCAGGCGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGT-GT
* *
17404 CTC-GTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
17435 CTCGGTCACCATCGGCAAACCCAGACGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGTGT
* * *
17466 CTCGGTCACCATCGGCAACCCCCGACGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGTGT
17497 CTCGG
1 CTCGG
17502 CAACCCCAGG
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
31 60 0.70
32 26 0.30
ACGTcount: A:0.18, C:0.37, G:0.28, T:0.16
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAAACCCAGACGGTGT
Found at i:17493 original size:63 final size:62
Alignment explanation
Indices: 17372--17501 Score: 163
Period size: 63 Copynumber: 2.1 Consensus size: 62
17362 GTGCGTGAGG
* * * * *
17372 CTCGGTCACCATCGGCAATCCCAGGCGGTGGCCTCGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGTGGCCTCGTCACCATCGGCAAACCCAGAC-GGTGC
* * *
17435 CTCGGTCACCATCGGCAAACCCAGACGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGTGGCCTC-GTCACCATCGGCAAACCCAGACGGTGC
17497 CTCGG
1 CTCGG
17502 CAACCCCAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
62 13 0.22
63 45 0.78
ACGTcount: A:0.18, C:0.37, G:0.28, T:0.16
Consensus pattern (62 bp):
CTCGGTCACCATCGGCAAACCCAGACGGTGGCCTCGTCACCATCGGCAAACCCAGACGGTGC
Found at i:17624 original size:93 final size:92
Alignment explanation
Indices: 17267--17636 Score: 293
Period size: 93 Copynumber: 4.0 Consensus size: 92
17257 CCCAGGCCAC
*
17267 GGGTGC-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGGCCACGG
17331 GTGCGGGAGTGCCGCACAGAACCGAGCGTT
65 GTGCGGGAGTGCCGCACAGAACCGA--GTT
* * * * * *
17361 -GGTGCGTGAGG-CTCGGTCACCATCGGCAATC-CCAGGCGGTGGCCTCGTC-ACCATTGGCAAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAA-CACCCGACGGT-GCCTCGGCAACC-----CCAG
** * *
17422 GCCAGACGGGTGTCTCG-GT-CAC-CATCGGCAAACCCA---
58 GCC--ACGGGTG-CGGGAGTGC-CGCA-CAG--AACCGAGTT
* * * *
17458 --G-AC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGG
*
17519 TGCGGGAGTGCCGCACAGAGCCGAGTT
66 TGCGGGAGTGCCGCACAGAACCGAGTT
* **
17546 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGGCCACGG
17611 GTGCGGGAGTGCCGCACAGAACCGAG
65 GTGCGGGAGTGCCGCACAGAACCGAG
17637 CGCTGGGTGC
Statistics
Matches: 215, Mismatches: 31, Indels: 61
0.70 0.10 0.20
Matches are distributed among these distances:
85 4 0.02
86 2 0.01
87 12 0.06
88 3 0.01
89 5 0.02
90 1 0.00
91 1 0.00
92 28 0.13
93 69 0.32
94 57 0.27
95 5 0.02
96 1 0.00
98 5 0.02
99 3 0.01
100 12 0.06
101 2 0.01
102 5 0.02
ACGTcount: A:0.18, C:0.35, G:0.35, T:0.13
Consensus pattern (92 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGG
TGCGGGAGTGCCGCACAGAACCGAGTT
Found at i:25859 original size:33 final size:32
Alignment explanation
Indices: 25822--25910 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
25812 GCGTGAGCCC
*
25822 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
25855 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
25887 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
25911 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:25998 original size:32 final size:32
Alignment explanation
Indices: 25957--26088 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
25947 GTGCGTGAGG
* *
25957 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
25989 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
26021 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
26053 CTCGGTCACCATC-GCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
26084 CTCGG
1 CTCGG
26089 CAACCCCAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 20 0.21
32 62 0.66
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:26213 original size:31 final size:31
Alignment explanation
Indices: 26172--26269 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
26162 CAACCCCCGA
26172 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
26203 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
26234 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
26266 CGGG
1 CGGG
26270 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:26234 original size:63 final size:63
Alignment explanation
Indices: 26135--26269 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
26125 GCCGAGAGTT
*
26135 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
26198 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
26261 GGGTGCGGG
1 GGGTGCGGG
26270 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:26234 original size:158 final size:157
Alignment explanation
Indices: 26053--26341 Score: 449
Period size: 158 Copynumber: 1.8 Consensus size: 157
26043 AGACGGGTGT
* *
26053 CTCGGTCACCATCGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCC
1 CTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
26118 GGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCC
66 GCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGCC
26180 TCGGCAACCCCAGGCCACGGGTGCGGGGGC
128 TCGGCAACCCCAGGCCACGGGTGCGGGGGC
26210 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
26275 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
65 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
26340 GG
130 GG
26342 TCACCATTGG
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
157 46 0.38
158 72 0.60
159 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (157 bp):
CTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
GCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:26245 original size:95 final size:93
Alignment explanation
Indices: 26021--26246 Score: 233
Period size: 95 Copynumber: 2.4 Consensus size: 93
26011 AGACGGGTGT
* *
26021 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGCAACCCCCGACGGGTGGCT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCT
26086 CGGCAACCCCAGGCCACGGGTGCGGGAG
66 CGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
26114 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATC-GCAACCCCCGACGGG
*
26176 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
61 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
26209 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
26247 CAACCCCAGG
Statistics
Matches: 99, Mismatches: 25, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
92 1 0.01
93 7 0.07
94 22 0.22
95 61 0.62
96 7 0.07
97 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (93 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCT
CGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:26378 original size:32 final size:32
Alignment explanation
Indices: 26304--26437 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
26294 GTGCGTGAGG
* *
26304 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
26337 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
26369 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
26401 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
26433 CTCGG
1 CTCGG
26438 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:26520 original size:95 final size:95
Alignment explanation
Indices: 26198--26586 Score: 369
Period size: 95 Copynumber: 4.1 Consensus size: 95
26188 CCCAGGCCAC
26198 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
26263 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
26292 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
26355 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
26390 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
26454 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
26484 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
26549 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
26579 GGGTGCGG
1 GGGTGCGG
26587 CAGCCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
93 4 0.02
94 39 0.17
95 117 0.52
96 27 0.12
97 33 0.15
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:34751 original size:33 final size:32
Alignment explanation
Indices: 34714--34802 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
34704 GCGTGAGCCC
*
34714 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
34747 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
34779 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
34803 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:34921 original size:32 final size:32
Alignment explanation
Indices: 34849--34979 Score: 187
Period size: 31 Copynumber: 4.2 Consensus size: 32
34839 GTGCGTGAGG
* *
34849 CTCGGTCACCATC-GC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
34880 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
34912 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
34943 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
34975 CTCGG
1 CTCGG
34980 CAACCCCAGG
Statistics
Matches: 92, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
31 42 0.46
32 38 0.41
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:34949 original size:63 final size:63
Alignment explanation
Indices: 34847--34979 Score: 189
Period size: 63 Copynumber: 2.1 Consensus size: 63
34837 TGGTGCGTGA
*
34847 GGCTCGGTCACCATCGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GGCTCGGTCACCATCGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * *
34910 GTCTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATC-GC-AACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
34973 GGCTCGG
1 GGCTCGG
34980 CAACCCCAGG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
63 49 0.79
64 5 0.08
65 8 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (63 bp):
GGCTCGGTCACCATCGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:35103 original size:30 final size:31
Alignment explanation
Indices: 35063--35159 Score: 92
Period size: 30 Copynumber: 3.1 Consensus size: 31
35053 CAACCCCCGA
35063 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * ****
35094 CGGG-GCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
35124 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
35156 CGGG
1 CGGG
35160 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
30 16 0.33
31 16 0.33
32 16 0.33
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:35120 original size:157 final size:157
Alignment explanation
Indices: 34943--35231 Score: 458
Period size: 157 Copynumber: 1.8 Consensus size: 157
34933 CAGACGGTGT
* *
34943 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
35008 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
66 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
35070 CTCGGCAACCCCAGGCCACGGGTGCGGGGC
128 CTCGGCAACCCCAGGCCACGGGTGCGGGGC
35100 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
35165 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
35230 GG
131 GG
35232 TCACCATTGG
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
156 33 0.27
157 86 0.71
158 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (157 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
GGCAACCCCAGGCCACGGGTGCGGGGC
Found at i:35124 original size:62 final size:63
Alignment explanation
Indices: 35026--35159 Score: 261
Period size: 62 Copynumber: 2.1 Consensus size: 63
35016 GCCGAGAGTT
35026 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
35089 GGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
35151 GGGTGCGGG
1 GGGTGCGGG
35160 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
62 61 0.86
63 10 0.14
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:35206 original size:94 final size:92
Alignment explanation
Indices: 35090--35470 Score: 317
Period size: 94 Copynumber: 4.1 Consensus size: 92
35080 CCAGGCCACG
35090 GGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GGTGCGGGG-CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
35155 GCGGGAGTGCCGCACAGAACCGAGCGTT
65 GCGGGAGTGCCGCACAGAACCGAGCGTT
* * * *** * *
35183 GGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAAAG
1 GGTGCG-G-GGCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCACG
*** * ** ** * ***
35247 CCAGACGGGTGT-CTCGGTCACCATCG-GCAAAC
62 GGTG-CGGGAGTGC-CGCACAGAACCGAGC-GTT
*** *
35279 CCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGAC-GG-GCCTCGGCAACCCCAGGCCAC-GG
1 GGTG-CGG-GGCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
* *
35341 -GCGGGAGTGCCGCACAGAGCCGAGAGTT
64 TGCGGGAGTGCCGCACAGAACCGAGCGTT
* * **
35369 GGGTGCGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGG
1 -GGTGCGGGG-CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
35434 TGCGGGAGTGCCGCACAGAACCGAGCGCTG
64 TGCGGGAGTGCCGCACAGAACCGAGCG-TT
35464 GGTGCGG
1 GGTGCGG
35471 CAGCCTCGCA
Statistics
Matches: 214, Mismatches: 56, Indels: 35
0.70 0.18 0.11
Matches are distributed among these distances:
89 1 0.00
90 40 0.19
91 6 0.03
92 20 0.09
93 22 0.10
94 59 0.28
95 24 0.11
96 40 0.19
97 2 0.01
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (92 bp):
GGTGCGGGGCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
CGGGAGTGCCGCACAGAACCGAGCGTT
Found at i:35292 original size:31 final size:32
Alignment explanation
Indices: 35194--35318 Score: 171
Period size: 31 Copynumber: 3.9 Consensus size: 32
35184 GTGCGTGAGG
* * *
35194 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
* *
35227 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
35259 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* *
35290 CTCGGTCACCATCGGCAACCCCCGACGGG
1 CTCGGTCACCATCGGCAAACCCAGACGGG
35319 CCTCGGCAAC
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 29 0.35
32 27 0.33
33 26 0.32
ACGTcount: A:0.19, C:0.36, G:0.30, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Done.