Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009482.1 Hibiscus syriacus cultivar Beakdansim tig00114496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39536
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Found at i:3041 original size:32 final size:32
Alignment explanation
Indices: 3005--3088 Score: 116
Period size: 32 Copynumber: 2.6 Consensus size: 32
2995 GTGTGCGTGC
* * *
3005 GCCTCGGTCACCATCGG-TAATCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
3036 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGACGGGT
*
3069 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
3089 CCCCCCATTG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
32 36 0.77
33 11 0.23
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.17
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:3208 original size:32 final size:31
Alignment explanation
Indices: 3167--3253 Score: 129
Period size: 32 Copynumber: 2.7 Consensus size: 31
3157 GTGTGCGTGA
* *
3167 GCCTCGGTCACCATCGGCAATCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAACCCAGACGGGT
3198 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGC-AACCCAGACGGGT
*
3231 GTCTCGGTCACCATCGGCAACCC
1 GCCTCGGTCACCATCGGCAACCC
3254 GGGCCATTGG
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
31 5 0.10
32 35 0.69
33 11 0.22
ACGTcount: A:0.18, C:0.38, G:0.29, T:0.15
Consensus pattern (31 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGGT
Found at i:3379 original size:166 final size:167
Alignment explanation
Indices: 2874--3437 Score: 897
Period size: 162 Copynumber: 3.4 Consensus size: 167
2864 ACGTGTGCGT
**
2874 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATC-GCAACCCCGGGCCA-T-
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
2936 -TGCGGGAGTGCCGCACAGACCGAGCGTTGGTGCGGGAG-CCTCGTCACCATCAGGCCCCCGTGT
66 GTGCGGGAGTGCCGCACAGACCGAGCGTTGGTGCGGGAGTCC-GGTCACCATCAGGCCCCCGTGT
* *
2999 GCGTGCGCCTCGGTCACCATCGGTAATCCAGGCGGGTG
130 GCGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
3037 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC---CCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* **
3099 GTGC-GG-GTGCCGCACAGTACCGAGCTTTGGTGCGGGCCT-CGGTCACCATCAGGCCCCCGTGT
66 GTGCGGGAGTGCCGCACAG-ACCGAGCGTTGGTGCGGGAGTCCGGTCACCATCAGGCCCCCGTGT
3161 GCGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
130 GCGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
3199 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAA-CCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
3263 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCCGGTCACCATCAGG-CCCCTTGT
66 GTGCGGGAGTGCCGCACAG-ACCGAGCGTTGGTGCGGGAGTCCGGTCACCATCAGGCCCCCGTGT
3327 GCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
130 GCGTGAGCCTCGGTCACCATCGGCAAT-CCAGGCGGGTG
*
3366 GCCTC-GTCACCATCGGCAAACCCAGACGGGTGTCTC-GTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
3429 GTGCGGGAG
66 GTGCGGGAG
3438 CCTCGTCACC
Statistics
Matches: 373, Mismatches: 14, Indels: 25
0.91 0.03 0.06
Matches are distributed among these distances:
161 6 0.02
162 121 0.32
163 65 0.17
164 21 0.06
165 15 0.04
166 115 0.31
167 30 0.08
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.16
Consensus pattern (167 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGACCGAGCGTTGGTGCGGGAGTCCGGTCACCATCAGGCCCCCGTGTG
CGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
Found at i:3406 original size:31 final size:31
Alignment explanation
Indices: 3333--3519 Score: 142
Period size: 31 Copynumber: 5.6 Consensus size: 31
3323 TTGTGCGTGA
* *
3333 GCCTCGGTCACCATCGGCAATCCCAGGCGGGT
1 GCCTC-GTCACCATCGGCAAACCCAGACGGGT
3365 GGCCTCGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGTCACCATCGGCAAACCCAGACGGGT
* * * * *
3397 GTCTCGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGA
1 GCCTCGTCACCATCGGCAA--AC---CCA---G-ACGGGT
** *
3437 GCCTCGTCACCATCGGCAGTCCCAGTCGGGT
1 GCCTCGTCACCATCGGCAAACCCAGACGGGT
3468 GGCCTCGGTCACCATCGGCAAACCCAGAC-GGT
1 -GCCTC-GTCACCATCGGCAAACCCAGACGGGT
*
3500 GTCTCGGTCACCATCGGCAA
1 GCCTC-GTCACCATCGGCAA
3520 CCCCGGGCCA
Statistics
Matches: 126, Mismatches: 17, Indels: 24
0.75 0.10 0.14
Matches are distributed among these distances:
31 40 0.32
32 33 0.26
33 25 0.20
35 3 0.02
36 3 0.02
38 1 0.01
39 1 0.01
40 20 0.16
ACGTcount: A:0.18, C:0.36, G:0.29, T:0.17
Consensus pattern (31 bp):
GCCTCGTCACCATCGGCAAACCCAGACGGGT
Found at i:3505 original size:103 final size:105
Alignment explanation
Indices: 3325--3541 Score: 368
Period size: 104 Copynumber: 2.1 Consensus size: 105
3315 CAGGCCCCTT
*
3325 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGTCACCATCGGCAAACCCA
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGTCACCATCGGCAAACCCA
*
3390 GACGGGTGTCTC-GTCACCATCGGTAACCCCGGGCCATTG
66 GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
3429 GTGCGGGAGCCTC-GTCACCATCGGCAGTCCCAGTCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC-GTCACCATCGGCAAACCC
3493 AGAC-GGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
65 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
3533 GTGCGGGAG
1 GTGCGGGAG
3542 TGCCGCACAG
Statistics
Matches: 107, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
103 38 0.36
104 69 0.64
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.17
Consensus pattern (105 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGTCACCATCGGCAAACCCA
GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:3610 original size:104 final size:104
Alignment explanation
Indices: 3325--3610 Score: 300
Period size: 104 Copynumber: 2.8 Consensus size: 104
3315 CAGGCCCCTT
* * * * * *
3325 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC-GTCACCATCGGCAAACCC
1 GTGCGGGAGCCTC-GTCACAACCGGCAGT-CCAGTCGGGTAGCCTCGGTCACCATCGGCAAACCC
*
3389 AGACGGGTGTCTC-GTCACCATCGGTAACCCCGGGCCATTG
64 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
3429 GTGCGGGAGCCTCGTCACCATCGGCAGTCCCAGTCGGGTGGCCTCGGTCACCATCGGCAAACCCA
1 GTGCGGGAGCCTCGTCACAACCGGCAGT-CCAGTCGGGTAGCCTCGGTCACCATCGGCAAACCCA
3494 GAC-GGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
65 GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* ** *
3533 GTGCGGGAGTGC-CG-CACAGAACCGGGC-GT-TGGTGCGGG-AGCCTCGGTCACCATCGGCAAC
1 GTGCGGGAG-CCTCGTCAC--AACC-GGCAGTCCAGT-CGGGTAGCCTCGGTCACCATCGGCAAA
* *
3593 CCCCGACGGGTGCCTCGG
61 CCCAGACGGGTGTCTCGG
3611 CAACCCCAGC
Statistics
Matches: 161, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
103 69 0.43
104 84 0.52
105 5 0.03
106 3 0.02
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (104 bp):
GTGCGGGAGCCTCGTCACAACCGGCAGTCCAGTCGGGTAGCCTCGGTCACCATCGGCAAACCCAG
ACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:3915 original size:11 final size:11
Alignment explanation
Indices: 3899--3926 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
3889 GGTTCCCGGT
3899 GCTCCGGCGAC
1 GCTCCGGCGAC
3910 GCTCCGGCGAC
1 GCTCCGGCGAC
3921 GCTCCG
1 GCTCCG
3927 CGAGACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.07, C:0.46, G:0.36, T:0.11
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:11865 original size:33 final size:32
Alignment explanation
Indices: 11825--11908 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 32
11815 GTGTGCGTGC
* * *
11825 GCCTCGGTCACCATCGGTAATCCAAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGT
*
11857 GGCCTCGGTCACCATC-GCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCAAGACGGGT
*
11889 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
11909 CCCCGGCCAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
31 14 0.31
32 16 0.36
33 15 0.33
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.17
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGT
Found at i:11911 original size:31 final size:32
Alignment explanation
Indices: 11825--11911 Score: 106
Period size: 31 Copynumber: 2.7 Consensus size: 32
11815 GTGTGCGTGC
* * *
11825 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAA-CCCAGACGGGTG
11858 GCCTCGGTCACCATC-GCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGC-AACCCAGACGGGTG
*
11889 GTCTCGGTCACCATCGGCAACCC
1 GCCTCGGTCACCATCGGCAACCC
11912 CGGCCATTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
31 19 0.40
32 12 0.25
33 17 0.35
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGGTG
Found at i:12031 original size:31 final size:31
Alignment explanation
Indices: 11993--12078 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 31
11983 GTGTGCGTGA
* * *
11993 GCCTCGGTCACCATCGGCAATCCTGGC-GGT
1 GCCTCGGTCACCATCGGCAACCCAGACGGGT
12023 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGC-AACCCAGACGGGT
*
12056 GTCTCGGTCACCATCGGCAACCC
1 GCCTCGGTCACCATCGGCAACCC
12079 CGGGCCATTG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
31 23 0.47
32 23 0.47
33 3 0.06
ACGTcount: A:0.17, C:0.38, G:0.28, T:0.16
Consensus pattern (31 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGGT
Found at i:12067 original size:32 final size:32
Alignment explanation
Indices: 11993--12075 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 32
11983 GTGTGCGTGA
* * *
11993 GCCTCGGTCACCATCGGC-AATCCTGGCGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGTG
12024 GCCTCGGTCACCATCGGCAAACCCAGACGG-G
1 GCCTCGGTCACCATCGGCAAACCCAGACGGTG
*
12055 TGTCTCGGTCACCATCGGCAA
1 -GCCTCGGTCACCATCGGCAA
12076 CCCCGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
31 19 0.41
32 27 0.59
ACGTcount: A:0.18, C:0.36, G:0.29, T:0.17
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGTG
Found at i:12094 original size:168 final size:168
Alignment explanation
Indices: 11693--12265 Score: 964
Period size: 167 Copynumber: 3.4 Consensus size: 168
11683 ACGTGTGCGT
*
11693 GCCTCGGTCACCATCGCAAA-ACAGAC-GGTGTCTCGGTCACCATCGGCAA-CCCGGGCCATTGG
1 GCCTCGGTCACCATCGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGG
*
11755 TGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGTTCACCATCA-GCCCCCGTGT
66 TGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGT
* *
11819 GCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 GCGTGAGCCTCGGTCACCATCGGCAATCC-AGGCGGGTG
11858 GCCTCGGTCACCATCGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTGG
1 GCCTCGGTCACCATCGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGG
* *
11922 TGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGT
66 TGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGT
*
11987 GCGTGAGCCTCGGTCACCATCGGCAATCCTGGC-GGTG
131 GCGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
12024 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATC-GCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
12089 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCCCTTG
65 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
12153 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
130 TGCGTGAGCCTCGGTCACCATCGGCAAT-CCAGGCGGGTG
*
12193 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATC-GTAACCCCGGGCCATTG
1 GCCTCGGTCACCATC-GCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
12257 GTGCGGGAG
65 GTGCGGGAG
12266 CCTCGTCACC
Statistics
Matches: 387, Mismatches: 13, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
165 20 0.05
166 24 0.06
167 160 0.41
168 132 0.34
169 51 0.13
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (168 bp):
GCCTCGGTCACCATCGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGG
TGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGT
GCGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
Found at i:12202 original size:33 final size:33
Alignment explanation
Indices: 12160--12354 Score: 130
Period size: 33 Copynumber: 5.6 Consensus size: 33
12150 TTGTGCGTGA
*
12160 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
12193 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
12225 GTCTCGGTCACCATC-GTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
*
12264 AGCCTC-GTCACCATCGGTCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGG-CA-----A-ACCCAGGCGGGTG
*
12304 GCCTCGGTCACCATCGGCAAACCCAGAC-GGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
12335 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
12355 CCCCGGCCAT
Statistics
Matches: 128, Mismatches: 16, Indels: 38
0.70 0.09 0.21
Matches are distributed among these distances:
31 26 0.20
32 18 0.14
33 36 0.28
34 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 16 0.12
40 18 0.14
41 2 0.02
42 1 0.01
46 2 0.02
47 5 0.04
ACGTcount: A:0.17, C:0.36, G:0.30, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:20857 original size:33 final size:32
Alignment explanation
Indices: 20820--20904 Score: 107
Period size: 33 Copynumber: 2.6 Consensus size: 32
20810 GTGTGCGTGC
* * *
20820 GCCTCGGTCACCATCGGTAATCCAAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGT
* *
20852 GGCCTCGGTCACCATCGACAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCAAGACGGGT
*
20885 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
20905 CCCCGGCCAT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
32 18 0.40
33 27 0.60
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGT
Found at i:21019 original size:168 final size:169
Alignment explanation
Indices: 20684--21263 Score: 1031
Period size: 169 Copynumber: 3.4 Consensus size: 169
20674 ACGTGTGCGT
**
20684 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
20749 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTC-GTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
20813 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCC-AGGCGGGTG
*
20853 GCCTCGGTCACCATCGACAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
20917 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
20982 TGCGTGAGCCTCGGTCACCATCGGCAATCCTGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
21021 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
21086 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCCCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
21150 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAAT-CCAGGCGGGTG
21190 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
21255 GTGCGGGAG
66 GTGCGGGAG
21264 CCTCGGTCAC
Statistics
Matches: 394, Mismatches: 14, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
168 147 0.37
169 247 0.63
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (169 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
Found at i:21030 original size:32 final size:31
Alignment explanation
Indices: 20989--21075 Score: 120
Period size: 32 Copynumber: 2.7 Consensus size: 31
20979 GTGTGCGTGA
* * *
20989 GCCTCGGTCACCATCGGCAATCCTGGCGGGT
1 GCCTCGGTCACCATCGGCAACCCAGACGGGT
21020 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGC-AACCCAGACGGGT
*
21053 GTCTCGGTCACCATCGGCAACCC
1 GCCTCGGTCACCATCGGCAACCC
21076 CGGGCCATTG
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
31 5 0.10
32 35 0.70
33 10 0.20
ACGTcount: A:0.17, C:0.38, G:0.29, T:0.16
Consensus pattern (31 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGGT
Found at i:21233 original size:32 final size:32
Alignment explanation
Indices: 21157--21378 Score: 189
Period size: 33 Copynumber: 6.6 Consensus size: 32
21147 TTGTGCGTGA
*
21157 GCCTCGGTCACCATCGGCAATCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
21189 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
* * *
21222 GTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCGGGA
1 GCCTCGGTCACCATCGGCAA--AC---CCA---G-GCGGGT
** * *
21263 GCCTCGGTCACCATCAGGC---CCTTGTGCGTGA
1 GCCTCGGTCACCATC-GGCAAACCCAG-GCGGGT
**
21294 GCCTCGGTCACCATCGGCAGTCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
21326 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
*
21359 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
21379 CCCCGGGCCA
Statistics
Matches: 157, Mismatches: 18, Indels: 29
0.77 0.09 0.14
Matches are distributed among these distances:
30 3 0.02
31 22 0.14
32 42 0.27
33 62 0.39
34 2 0.01
37 4 0.03
40 1 0.01
41 18 0.11
42 3 0.02
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGT
Found at i:21298 original size:137 final size:138
Alignment explanation
Indices: 21114--21400 Score: 549
Period size: 137 Copynumber: 2.1 Consensus size: 138
21104 GAACCGAGCG
*
21114 TTGGTGCGGGAGTCTCGGTCACCATCAGGCCCCTTGTGCGTGAGCCTCGGTCACCATCGGCAATC
1 TTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTTGTGCGTGAGCCTCGGTCACCATCGGCAATC
21179 CCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACC
66 CCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACC
21244 CCGGGCCA
131 CCGGGCCA
*
21252 TTGGTGCGGGAGCCTCGGTCACCATCAGG-CCCTTGTGCGTGAGCCTCGGTCACCATCGGCAGTC
1 TTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTTGTGCGTGAGCCTCGGTCACCATCGGCAATC
21316 CCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACC
66 CCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACC
21381 CCGGGCCA
131 CCGGGCCA
21389 TTGGTGCGGGAG
1 TTGGTGCGGGAG
21401 TGCCGCACAG
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
137 119 0.81
138 28 0.19
ACGTcount: A:0.15, C:0.34, G:0.33, T:0.17
Consensus pattern (138 bp):
TTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCTTGTGCGTGAGCCTCGGTCACCATCGGCAATC
CCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACC
CCGGGCCA
Found at i:21302 original size:169 final size:170
Alignment explanation
Indices: 20684--21378 Score: 1018
Period size: 169 Copynumber: 4.1 Consensus size: 170
20674 ACGTGTGCGT
**
20684 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
20749 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTC-GTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACACAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* * *
20813 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
*
20853 GCCTCGGTCACCATCGACAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
** *
20917 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACACAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
20982 TGCGTGAGCCTCGGTCACCATCGGCAAT-CCTGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
21021 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
21086 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCCCTTG
66 GTGCGGGAGTGCCGCACACAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
21150 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
21190 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * * * *
21255 GTGCGGGAGCCT-CGGTCAC-CATCAG-GCCCTT-GTGCGTGAGCCTCGGTCACCATC-GGCAGT
66 GTGCGGGAG--TGCCG-CACACAACCGAG-CGTTGGTGCGGGAGCCTCGGTCACCATCAGGC---
* * * * *
21315 CCCAG-GCGGGTG-GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
124 CCCCGTGTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
*
21359 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
21379 CCCCGGGCCA
Statistics
Matches: 486, Mismatches: 29, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
168 150 0.31
169 286 0.59
170 38 0.08
171 9 0.02
172 3 0.01
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACACAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
Found at i:21427 original size:137 final size:136
Alignment explanation
Indices: 21114--21469 Score: 520
Period size: 137 Copynumber: 2.6 Consensus size: 136
21104 GAACCGAGCG
* *
21114 TTGGTGCGGGAGTCTCGGTCACCATCAGGCCCCTTGTGCGTGAGCCTCGGTCACCATCGGCAATC
1 TTGGTGCGGGAG-CTCCGTCACCAACAGG-CCCTTGTGCGTGAGCCTCGGTCACCATCGGCAATC
21179 CCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACC
64 CCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACC
21244 CCGGGCCA
129 CCGGGCCA
* * *
21252 TTGGTGCGGGAGCCTCGGTCACCATCAGGCCCTTGTGCGTGAGCCTCGGTCACCATCGGCAGTCC
1 TTGGTGCGGGAG-CTCCGTCACCAACAGGCCCTTGTGCGTGAGCCTCGGTCACCATCGGCAATCC
21317 CAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCC
65 CAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCC
21382 CGGGCCA
130 CGGGCCA
* * * * * *
21389 TTGGTGCGGGAG-TGCCG-CACAGAACCGGGCGTTGGTGCGGGAGCCTCGGTCACCATCGGCAAC
1 TTGGTGCGGGAGCT-CCGTCAC-CAACAGGCCCTT-GTGCGTGAGCCTCGGTCACCATCGGCAAT
* *
21452 CCCCGACGGGT-GCCTCGG
63 CCCAGGCGGGTGGCCTCGG
21470 CAACCCCAGG
Statistics
Matches: 202, Mismatches: 13, Indels: 8
0.91 0.06 0.04
Matches are distributed among these distances:
135 4 0.02
136 16 0.08
137 154 0.76
138 28 0.14
ACGTcount: A:0.15, C:0.35, G:0.33, T:0.17
Consensus pattern (136 bp):
TTGGTGCGGGAGCTCCGTCACCAACAGGCCCTTGTGCGTGAGCCTCGGTCACCATCGGCAATCCC
AGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC
GGGCCA
Found at i:21431 original size:337 final size:336
Alignment explanation
Indices: 20684--21378 Score: 996
Period size: 337 Copynumber: 2.1 Consensus size: 336
20674 ACGTGTGCGT
** * *
20684 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCGCGGTCACCATCAGCAA-CCCGGGCCATTG
20749 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGTCACCATCAGGCCCCCGTGT
65 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGTCACCATCAGGCCCCCGTGT
* *
20814 GCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTGGCCTCGGTCACCATCGACAAACCCAG
130 GCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGACAAACCCAG
*
20879 ACGGGTGTCTCGGTCACCATCGGCAACCCCGGCCATTGGTGCGGGAGTGCCGCACAGTACCGAGC
195 ACGGGTGTCTCGGTCACCATCGGCAACCCCGGCCATTGGTGCGGGAGTGCCGCACAGTACAGAGC
* * *
20944 TTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTGTGCGTGAGCCTCGGTCACCATCGGCAA
260 CTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCAGTGCGCGTGAGCCTCGGTCACCATCGGCAA
* * *
21009 TCCTGGCGGGTG
325 CCCAGACGGGTG
* *
21021 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCGCGGTCACCATCAGCAA-CCCGGGCCATTG
* *
21086 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCCCTTG
65 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTC-GTCACCATCAGGCCCCCGTG
* *
21150 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCA
129 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGACAAACCCA
*
21215 GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCGGGAGCCT-CGGTCACCA-T-
194 GACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTGGTGCGGGAG--TGCCG-CA-CAGTA
* *
21277 CAG-GCCCTT-GTGCGTGAGCCTCGGTCACCATC-GGCAGTCCCAG-GCGGGTG-GCCTCGGTCA
254 CAGAG-CCTTGGTGCGGGAGCCTCGGTCACCATCAGGC---CCCAGTGCGCGTGAGCCTCGGTCA
21337 CCATCGGCAAACCCAGACGGGT-
315 CCATCGGC-AACCCAGACGGGTG
*
21359 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
21379 CCCCGGGCCA
Statistics
Matches: 328, Mismatches: 19, Indels: 21
0.89 0.05 0.06
Matches are distributed among these distances:
337 207 0.63
338 89 0.27
339 22 0.07
340 8 0.02
341 2 0.01
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (336 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCGCGGTCACCATCAGCAACCCGGGCCATTGG
TGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGTCACCATCAGGCCCCCGTGTG
CGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTGGCCTCGGTCACCATCGACAAACCCAGA
CGGGTGTCTCGGTCACCATCGGCAACCCCGGCCATTGGTGCGGGAGTGCCGCACAGTACAGAGCC
TTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCAGTGCGCGTGAGCCTCGGTCACCATCGGCAAC
CCAGACGGGTG
Found at i:21795 original size:10 final size:10
Alignment explanation
Indices: 21769--21800 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
21759 TCCCGGTGGT
21769 GCTCCGGCGA
1 GCTCCGGCGA
21779 CGCTCCGGCGA
1 -GCTCCGGCGA
21790 GCTCCGGCGA
1 GCTCCGGCGA
21800 G
1 G
21801 ACATTATCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.09
Consensus pattern (10 bp):
GCTCCGGCGA
Found at i:35643 original size:33 final size:32
Alignment explanation
Indices: 35606--35690 Score: 107
Period size: 33 Copynumber: 2.6 Consensus size: 32
35596 GTGTGCGTGC
* * *
35606 GCCTCGGTCACCATCGGTAATCCAAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGT
* *
35638 GGCCTCGGTCACCATCGACAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCAAGACGGGT
*
35671 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
35691 CCCCGGCCAT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
32 18 0.40
33 27 0.60
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGT
Found at i:35818 original size:32 final size:31
Alignment explanation
Indices: 35775--35860 Score: 111
Period size: 32 Copynumber: 2.7 Consensus size: 31
35765 GTGTGCGTGA
* * *
35775 GCCTCGG-CACCATCGGCAATCCTGGCGGGT
1 GCCTCGGTCACCATCGGCAACCCAGACGGGT
35805 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGC-AACCCAGACGGGT
*
35838 GTCTCGGTCACCATCGGCAACCC
1 GCCTCGGTCACCATCGGCAACCC
35861 CGGGCCATTG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
31 12 0.24
32 27 0.55
33 10 0.20
ACGTcount: A:0.17, C:0.38, G:0.29, T:0.15
Consensus pattern (31 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGGT
Found at i:35971 original size:167 final size:168
Alignment explanation
Indices: 35469--36046 Score: 991
Period size: 167 Copynumber: 3.4 Consensus size: 168
35459 ACGTGTGCGT
**
35469 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
35534 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGTTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGG-CCCCGTG
* * *
35599 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
130 TGCGTGAGCCTC-GTCACCATCGGCAATCCCAGGCGGGTG
*
35639 GCCTCGGTCACCATCGACAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
35703 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGG-CCCCGTG
* *
35768 TGCGTGAGCCTCGGCACCATCGGCAAT-CCTGGCGGGTG
130 TGCGTGAGCCTCGTCACCATCGGCAATCCCAGGCGGGTG
35806 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
35871 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCCTTGT
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCGTGT
35935 GCGTGAGCCTCGTCACCATCGGCAATCCCAGGCGGGTG
131 GCGTGAGCCTCGTCACCATCGGCAATCCCAGGCGGGTG
35973 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
36038 GTGCGGGAG
66 GTGCGGGAG
36047 CCTCGGTCAC
Statistics
Matches: 388, Mismatches: 18, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
166 31 0.08
167 148 0.38
168 75 0.19
169 81 0.21
170 53 0.14
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (168 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCGTGT
GCGTGAGCCTCGTCACCATCGGCAATCCCAGGCGGGTG
Found at i:35984 original size:33 final size:33
Alignment explanation
Indices: 35941--36157 Score: 157
Period size: 32 Copynumber: 6.6 Consensus size: 33
35931 TTGTGCGTGA
*
35941 GCCTC-GTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
35973 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * ***
36005 GTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* *
36038 G--TGCGG-GAGCC-TCGGTC--ACCATCAGGTTGTGCGTG
1 GCCT-CGGTCA-CCATCGG-CAAACC--CAGG-CG-G-GTG
**
36073 AGCCTC-GTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
36106 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
36138 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
36158 CCCCGGGCCA
Statistics
Matches: 144, Mismatches: 23, Indels: 36
0.71 0.11 0.18
Matches are distributed among these distances:
30 2 0.01
31 6 0.04
32 63 0.44
33 51 0.35
34 1 0.01
35 3 0.02
36 9 0.06
37 6 0.04
38 3 0.02
ACGTcount: A:0.17, C:0.35, G:0.31, T:0.17
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:36097 original size:133 final size:134
Alignment explanation
Indices: 35899--36179 Score: 519
Period size: 133 Copynumber: 2.1 Consensus size: 134
35889 GAACCGAGCG
*
35899 TTGGTGCGGGAGTCTCGGTCACCATCAGGCCCTTGTGCGTGAGCCTCGTCACCATCGGCAATCCC
1 TTGGTGCGGGAGCCTCGGTCACCATCAGG--CTTGTGCGTGAGCCTCGTCACCATCGGCAATCCC
35964 AGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC
64 AGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC
36029 GGGCCA
129 GGGCCA
*
36035 TTGGTGCGGGAGCCTCGGTCACCATCAGG-TTGTGCGTGAGCCTCGTCACCATCGGCAGTCCCAG
1 TTGGTGCGGGAGCCTCGGTCACCATCAGGCTTGTGCGTGAGCCTCGTCACCATCGGCAATCCCAG
36099 GCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGG
66 GCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGG
36164 GCCA
131 GCCA
36168 TTGGTGCGGGAG
1 TTGGTGCGGGAG
36180 TGCCGCACAG
Statistics
Matches: 143, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
133 115 0.80
136 28 0.20
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.18
Consensus pattern (134 bp):
TTGGTGCGGGAGCCTCGGTCACCATCAGGCTTGTGCGTGAGCCTCGTCACCATCGGCAATCCCAG
GCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGG
GCCA
Found at i:36560 original size:11 final size:11
Alignment explanation
Indices: 36546--36577 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
36536 TCCCGGTGGT
36546 GCTCCGGCGAC
1 GCTCCGGCGAC
36557 GCTCCGGCGAC
1 GCTCCGGCGAC
36568 GCTCCGGCGA
1 GCTCCGGCGA
36578 GACATTATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.44, G:0.38, T:0.09
Consensus pattern (11 bp):
GCTCCGGCGAC
Done.