Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009484.1 Hibiscus syriacus cultivar Beakdansim tig00114536_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29752

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1638--1724
32
2.7
32
81
1
111
20
36
27
14
1.92
1638--1716
33
2.4
33
87
2
106
21
34
27
16
1.95
1771--1900
32
4.2
31
88
6
174
18
37
29
14
1.90
1769--1900
62
2.1
63
87
4
196
18
37
30
14
1.90
1949--2084
64
2.1
63
90
8
222
13
40
33
12
1.83
1870--2156
161
1.8
157
84
7
400
16
36
34
13
1.87
2119--2249
32
4.2
32
85
5
169
18
35
29
16
1.92
1800--2221
158
2.7
158
76
13
445
17
35
31
14
1.91
2215--2380
89
1.8
92
89
6
268
18
36
32
12
1.88
10496--10582
31
2.8
32
77
7
97
20
37
26
14
1.92
10629--10742
32
3.6
32
95
2
194
20
35
28
14
1.92
10817--10934
62
1.9
63
98
1
229
15
41
33
9
1.79
10969--11092
32
3.9
32
87
2
160
19
36
28
16
1.93
10568--11216
340
1.9
343
92
3
1094
17
34
34
13
1.89
19297--19380
32
2.7
31
79
3
98
21
38
25
15
1.92
19427--19553
30
4.2
31
87
9
156
18
38
28
14
1.90
19425--19553
61
2.1
61
83
8
165
17
37
29
14
1.90
19600--19723
58
2.1
57
85
14
166
14
41
33
10
1.80
19758--19886
31
4.2
29
81
9
125
18
37
27
16
1.92
28084--28170
32
2.7
32
81
1
111
20
36
27
14
1.92
28084--28162
33
2.4
33
87
2
106
21
34
27
16
1.95
28217--28345
31
4.2
32
90
5
178
18
37
28
14
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28396--28518
63
2.1
58
89
9
185
14
42
33
9
1.79
28246--28645
154
2.6
153
77
10
440
18
36
32
13
1.89
28553--28684
31
4.2
32
88
1
169
18
36
29
15
1.92
28156--28796
336
1.9
334
90
5
1033
17
35
33
13
1.89

Tables:   1

The End!