Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009485.1 Hibiscus syriacus cultivar Beakdansim tig00114552_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 83743
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Found at i:5617 original size:94 final size:95
Alignment explanation
Indices: 5464--5648 Score: 300
Period size: 94 Copynumber: 2.0 Consensus size: 95
5454 TGCGAGGCTG
* *
5464 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
*
5529 GTCGGGTG-TGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* ** *
5558 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
5623 GTCGGGGGTTGCCGATGGTGACCGAG
66 GTCGGGGGTTGCCGATGGTGACCGAG
5649 ACACCCGTCT
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
94 66 0.80
95 17 0.20
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:5648 original size:32 final size:32
Alignment explanation
Indices: 5612--5749 Score: 188
Period size: 32 Copynumber: 4.3 Consensus size: 32
5602 CCTGGGGTTG
* *
5612 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCTGGGTTTGCCGATGGTGA
*
5644 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGGCACCCGTCTGGGTTTGCCGATGGTGA
* * *
5676 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGGCACCCGTCTGGGTTTGCCGATGGTGA
* *
5708 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGG-CACCCGTCTGGGTTTGCCGATGGTGA
5741 CCGA-GCACC
1 CCGAGGCACC
5750 ACCAACGCTC
Statistics
Matches: 95, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 4 0.04
32 65 0.68
33 26 0.27
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.17
Consensus pattern (32 bp):
CCGAGGCACCCGTCTGGGTTTGCCGATGGTGA
Found at i:5826 original size:157 final size:156
Alignment explanation
Indices: 5644--6056 Score: 491
Period size: 157 Copynumber: 2.6 Consensus size: 156
5634 CCGATGGTGA
* *
5644 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
* * *
5709 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAG-CAC-CA-CCAACGCTCGGTTCTGTGCG
66 CGAGG-CACCCGTCTGGG-TTGCCGATGGTGACCGAGACACGCACCCAACGCTCGGCTCTGTCCG
*
5771 GCACTCCCGCACCCACCGTGGCCT-GGGTTG
129 GAACTCCCGCA--C-CCGTGGCCTGGGGTTG
* * *** * * ***
5801 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAG-CCCCCG-CACCCGTGGCCTGGGGTTG-
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGG-TGA
* *
5863 CCGAGGCACCCGTC-GGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGCTCTGTCC
65 CCGAGGCACCCGTCTGGGTTGCCGATGGTGACCGA-GA-CACGCACCCAACGCTCGGCTCTGTCC
5927 GGAACTCCCGCACCCGTGGCCTGGGGTTG
128 GGAACTCCCGCACCCGTGGCCTGGGGTTG
* * *
5956 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
*
6021 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAG
66 CGAGGCACCCGTCTGGG-TTGCCGATGGTGACCGAG
6057 GCCACCCGCC
Statistics
Matches: 214, Mismatches: 30, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
152 17 0.08
153 4 0.02
154 16 0.07
155 59 0.28
156 16 0.07
157 81 0.38
158 4 0.02
159 17 0.08
ACGTcount: A:0.14, C:0.35, G:0.34, T:0.17
Consensus pattern (156 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
CGAGGCACCCGTCTGGGTTGCCGATGGTGACCGAGACACGCACCCAACGCTCGGCTCTGTCCGGA
ACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:5851 original size:61 final size:61
Alignment explanation
Indices: 5786--5909 Score: 207
Period size: 60 Copynumber: 2.0 Consensus size: 61
5776 CCCGCACCCA
*
5786 CCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGA-GCCCCCGCAC
1 CCGTGGCCTGGGGTTGCCGAGGCACCCGTC--GGGTTGCCGATGGTGACCGAGGACCCCGCAC
5847 CCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGTTGCCGATGGTGACCGAGGACCCCGCAC
1 CCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGTTGCCGATGGTGACCGAGGACCCCGCAC
5908 CC
1 CC
5910 AACTCTCGGC
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
60 20 0.33
61 20 0.33
62 20 0.33
ACGTcount: A:0.10, C:0.36, G:0.39, T:0.15
Consensus pattern (61 bp):
CCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGTTGCCGATGGTGACCGAGGACCCCGCAC
Found at i:5988 original size:155 final size:154
Alignment explanation
Indices: 5708--5992 Score: 409
Period size: 155 Copynumber: 1.8 Consensus size: 154
5698 CCAATGGTGA
* * *
5708 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCACCACCAACGCTCGGTTCTGTGCGGC
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCACCACCAACGCTCGGCTCTGTCCGGA
*
5773 ACTCCCGCACCCACCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAG
66 ACTCCCGCA-CCACCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAG
5838 CCCCCGCACCCGTGGCCTGGGGTTG
130 CCCCCGCACCCGTGGCCTGGGGTTG
* * *
5863 CCGAGG-CACCCGTC-GGG-TTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGCTCTGT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G--CAC-CA-CCAACGCTCGGCTCTGT
5925 CCGGAACTCCCGCA-C-CCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
61 CCGGAACTCCCGCACCACCGTGGCCT-GGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
5988 CCGAG
125 CCGAG
5993 ACACCCGTCT
Statistics
Matches: 117, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
152 17 0.15
153 4 0.03
154 16 0.14
155 51 0.44
156 2 0.02
157 27 0.23
ACGTcount: A:0.13, C:0.37, G:0.35, T:0.15
Consensus pattern (154 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCACCACCAACGCTCGGCTCTGTCCGGA
ACTCCCGCACCACCGTGGCCTGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGC
CCCCGCACCCGTGGCCTGGGGTTG
Found at i:5998 original size:32 final size:32
Alignment explanation
Indices: 5956--6088 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
5946 CCTGGGGTTG
* *
5956 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
5988 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
6020 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
6052 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
6084 CCGAG
1 CCGAG
6089 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:6212 original size:33 final size:32
Alignment explanation
Indices: 6135--6223 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
6125 CTCACCAATG
*
6135 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
6167 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
6200 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
6224 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:14544 original size:95 final size:95
Alignment explanation
Indices: 14389--14776 Score: 381
Period size: 95 Copynumber: 4.1 Consensus size: 95
14379 TGCGAGGCTG
* ** *
14389 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
14454 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
14484 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
14549 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * *** *
14579 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TACCGAGGCC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTGCCGAGG-C
* * *
14641 ACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
62 ACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
14675 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
14739 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
14769 CCGCACCC
1 CCGCACCC
14777 GTGGCCTGGG
Statistics
Matches: 219, Mismatches: 64, Indels: 20
0.72 0.21 0.07
Matches are distributed among these distances:
94 43 0.20
95 135 0.62
96 41 0.19
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:14574 original size:32 final size:32
Alignment explanation
Indices: 14538--14670 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
14528 CCTGGGGTTG
* * *
14538 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
14570 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
14602 CCGAGACACCCGTCTGGCTTTGCCAATGGT-A
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
14633 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
14666 CCGAG
1 CCGAG
14671 CCTCACGCAC
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
31 5 0.06
32 79 0.89
33 5 0.06
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:14763 original size:158 final size:157
Alignment explanation
Indices: 14570--14986 Score: 525
Period size: 158 Copynumber: 2.6 Consensus size: 157
14560 CCGATGGTGA
* *
14570 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTACC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTACC
* * *
14635 GAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAG-CCTCACGCA-CCAACGCTCGGTTCTGTG
66 GAGG-CACCCGTCTGGGATTGCCGATGGTGACCGAGACC-C-CGCACCCAACGCTCGGCTCTGTC
*
14698 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * * *** *
14728 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCGTGGCCTGGGGTTGC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGG-TAC
* * *
14792 CGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGCTCTGTCC
65 CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGA-GACCCCGCACCCAACGCTCGGCTCTGTCC
14857 GGAACTCCCGCACCCGTGGCCTGGGGTTG
129 GGAACTCCCGCACCCGTGGCCTGGGGTTG
* * *
14886 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGT-AC
* *
14951 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAG
65 CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAG
14987 GCCACCCGCC
Statistics
Matches: 216, Mismatches: 37, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
157 39 0.18
158 135 0.62
159 42 0.19
ACGTcount: A:0.13, C:0.34, G:0.35, T:0.18
Consensus pattern (157 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTACC
GAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGACCCCGCACCCAACGCTCGGCTCTGTCCGG
AACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:14764 original size:32 final size:32
Alignment explanation
Indices: 14728--14832 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
14718 CCTGGGGTTG
14728 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
14760 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
14791 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
14823 CCGAGG-ACCC
1 CCGAGGCACCC
14833 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:14783 original size:63 final size:63
Alignment explanation
Indices: 14705--14839 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
14695 GTGCGGCACT
*
14705 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
14768 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
14831 CCCGCACCC
1 CCCGCACCC
14840 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:14797 original size:31 final size:31
Alignment explanation
Indices: 14705--14802 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
14695 GTGCGGCACT
14705 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
14736 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
14768 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
14799 CCCG
1 CCCG
14803 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:14828 original size:190 final size:191
Alignment explanation
Indices: 14462--14828 Score: 512
Period size: 190 Copynumber: 1.9 Consensus size: 191
14452 CCGTCGGGTG
* *
14462 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
14527 GCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTG
66 GCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGG
* * *
14592 CCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTACCGAGGCCACCCGCCTGGGA
131 CCGAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTACCGAGGCCACCCGCCTGGGA
*
14653 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
14716 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-T
65 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTT
* * *
14779 GGCCTG-GGGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
129 GGCC-GAGGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGT-ACCGAGG
14829 ACCCCGCACC
Statistics
Matches: 156, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
189 32 0.21
190 102 0.65
191 22 0.14
ACGTcount: A:0.13, C:0.35, G:0.36, T:0.17
Consensus pattern (191 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGG
CCGAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTACCGAGGCCACCCGCCTGGGA
Found at i:14928 original size:32 final size:32
Alignment explanation
Indices: 14886--15018 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
14876 CCTGGGGTTG
* *
14886 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
14918 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
14950 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
14982 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
15014 CCGAG
1 CCGAG
15019 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:15069 original size:348 final size:348
Alignment explanation
Indices: 14420--15079 Score: 1187
Period size: 348 Copynumber: 1.9 Consensus size: 348
14410 GTGCGGCACT
* *
14420 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
* * *
14485 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
14550 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
131 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
14615 CTGGCTTTGCCAATGGTACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
196 CTGGCTTTGCCAATGGTACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
**
14680 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG
261 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGG
14745 GGTTGCCGATGGTGACCGAGGCC
326 GGTTGCCGATGGTGACCGAGGCC
** *
14768 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
14833 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
14898 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
131 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
* *
14963 CTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGC
196 CTGGCTTTGCCAATGGT-ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
*
15027 ACCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
260 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
15080 TGGTGACCGA
Statistics
Matches: 298, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
348 278 0.93
349 20 0.07
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (348 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
CTGGCTTTGCCAATGGTACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGG
GGTTGCCGATGGTGACCGAGGCC
Found at i:15142 original size:33 final size:32
Alignment explanation
Indices: 15065--15153 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
15055 CTCACCAATG
*
15065 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
15097 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
15130 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
15154 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:23461 original size:95 final size:94
Alignment explanation
Indices: 23306--23693 Score: 372
Period size: 95 Copynumber: 4.1 Consensus size: 94
23296 TGCGAGGCTG
* ** *
23306 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
23371 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
23401 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
23466 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTC-GGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
23496 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
23558 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
23593 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
23657 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
23686 CCGCACCC
1 CCGCACCC
23694 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 60, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
93 25 0.11
94 12 0.05
95 117 0.53
96 37 0.17
97 30 0.14
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:23491 original size:32 final size:32
Alignment explanation
Indices: 23455--23588 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
23445 CCTGGGGTTG
* * *
23455 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
23487 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
23519 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
23551 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
23584 CCGAG
1 CCGAG
23589 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:23681 original size:31 final size:31
Alignment explanation
Indices: 23646--23746 Score: 79
Period size: 31 Copynumber: 3.4 Consensus size: 31
23636 CCTGGGGTTG
23646 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** * *
23677 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCC-GATGG-TGA
23708 CCGAGGCACCCGTCGGGGTTGCCGAT-G-GA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
23737 CCGAGG-ACCC
1 CCGAGGCACCC
23747 CGCACCCAAC
Statistics
Matches: 52, Mismatches: 12, Indels: 15
0.66 0.15 0.19
Matches are distributed among these distances:
28 5 0.10
29 6 0.12
30 3 0.06
31 34 0.65
32 4 0.08
ACGTcount: A:0.12, C:0.36, G:0.40, T:0.13
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:23699 original size:62 final size:60
Alignment explanation
Indices: 23623--23753 Score: 235
Period size: 62 Copynumber: 2.1 Consensus size: 60
23613 GTGCGGCACT
*
23623 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGAT-G-GACCGAGGAC
23685 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGACCGAGGAC
23745 CCCGCACCC
1 CCCGCACCC
23754 AACTCTCGGC
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
60 18 0.26
61 1 0.01
62 49 0.72
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.13
Consensus pattern (60 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGACCGAGGAC
Found at i:23779 original size:154 final size:157
Alignment explanation
Indices: 23551--23835 Score: 438
Period size: 154 Copynumber: 1.8 Consensus size: 157
23541 CCAATGGTGA
* *
23551 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
23616 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGA
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
23681 GGCCCCCGCACCCGTGGCCTGGGGTTG
131 GGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
23708 CCGAGG-CACCCGTC-GGGGTTGCCGAT-G-GACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
23767 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
23832 CGAG
128 CGAG
23836 ACACCCGTCT
Statistics
Matches: 118, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
153 10 0.08
154 82 0.69
155 13 0.11
156 7 0.06
157 6 0.05
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.15
Consensus pattern (157 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:23859 original size:32 final size:32
Alignment explanation
Indices: 23800--23931 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
23790 CCTGGGGTTG
* *
23800 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
23831 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
23863 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
23895 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
23927 CCGAG
1 CCGAG
23932 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:24055 original size:33 final size:32
Alignment explanation
Indices: 23978--24066 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
23968 CTCACCAATG
*
23978 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
24010 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
24043 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
24067 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:32369 original size:32 final size:32
Alignment explanation
Indices: 32333--32466 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
32323 CCTGGGGTTG
* * *
32333 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
32365 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
32397 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
32429 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
32462 CCGAG
1 CCGAG
32467 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:32560 original size:32 final size:32
Alignment explanation
Indices: 32524--32628 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
32514 CCTGGGGTTG
32524 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
32556 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
32587 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
32619 CCGAGG-ACCC
1 CCGAGGCACCC
32629 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:32579 original size:63 final size:63
Alignment explanation
Indices: 32501--32635 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
32491 GTGCGGCACT
*
32501 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
32564 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
32627 CCCGCACCC
1 CCCGCACCC
32636 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:32593 original size:31 final size:31
Alignment explanation
Indices: 32501--32598 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
32491 GTGCGGCACT
32501 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
32532 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
32564 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
32595 CCCG
1 CCCG
32599 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:32691 original size:157 final size:158
Alignment explanation
Indices: 32429--32717 Score: 451
Period size: 157 Copynumber: 1.8 Consensus size: 158
32419 CCAATGGTGA
* * *
32429 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
32494 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
32559 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
32587 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
32649 GTCCGGAACTCCCGCACCCGTGGCCT-GGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
32713 CCGAG
128 CCGAG
32718 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
157 73 0.61
158 45 0.38
159 2 0.02
ACGTcount: A:0.12, C:0.37, G:0.36, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:32723 original size:32 final size:32
Alignment explanation
Indices: 32681--32813 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
32671 GCCTGGGTTG
* *
32681 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
32713 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
32745 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
32777 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
32809 CCGAG
1 CCGAG
32814 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:32780 original size:158 final size:159
Alignment explanation
Indices: 32365--32784 Score: 523
Period size: 158 Copynumber: 2.7 Consensus size: 159
32355 CCGATGGTGA
* * * *
32365 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
32430 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
32494 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
32524 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * *
32586 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
32648 TGTCCGGAACTCCCGCACCCGTGGCCT-GGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
32681 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
32746 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
32785 ACCCGCCTGG
Statistics
Matches: 220, Mismatches: 31, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
157 85 0.39
158 92 0.42
159 43 0.20
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:32823 original size:158 final size:155
Alignment explanation
Indices: 32365--32948 Score: 446
Period size: 158 Copynumber: 3.6 Consensus size: 155
32355 CCGATGGTGA
* * * * *
32365 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *
32430 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG-
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC-CACCCACCAAAGTTCGG--ATGTGC
32494 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGC-CTCCCGCACCCGTGGCCT-GGGTTG
* * * *** * *
32524 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * * * * *
32586 G-CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-CCGCACCCAACTCTCGGCTC
63 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG-CCACC-CACCAAAGT-TCGGATG
*
32648 TGTCCGGAACTCCCGCACCCGTGGCCTGGGTTG
125 TG-CCGG-CCTCCCGCACCCGTGGCCTGGGTTG
32681 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *** *
32746 CGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGTTGCCGATGGTGAC
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTT-CGGAT-GTG-C
* * * **
32810 CGAGCCTCACGCACCAACGCTCGGTTCTGTGCGG
128 CG-GCCTCCCGCACC--CG-T-GG-CCTGGGTTG
*** * * * * *
32844 CACTCCCTCACCAATGGCCTGGGGTTGCCGATGGTGACCGAGACACCCGTATGGTTTTGCCGATG
1 C-CGAGC-CACC---CGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATG
32909 GTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
61 GTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
32949 GGGCTCACGC
Statistics
Matches: 337, Mismatches: 59, Indels: 48
0.76 0.13 0.11
Matches are distributed among these distances:
156 6 0.02
157 95 0.28
158 96 0.28
159 42 0.12
160 2 0.01
161 1 0.00
162 2 0.01
163 6 0.02
164 2 0.01
165 4 0.01
168 53 0.16
169 28 0.08
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (155 bp):
CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTTCGGATGTGCCGG
CCTCCCGCACCCGTGGCCTGGGTTG
Found at i:32937 original size:33 final size:32
Alignment explanation
Indices: 32860--32948 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
32850 CTCACCAATG
*
32860 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
32892 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
32925 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
32949 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:41276 original size:93 final size:95
Alignment explanation
Indices: 41125--41509 Score: 333
Period size: 93 Copynumber: 4.1 Consensus size: 95
41115 TGCGAGGCTG
* * ** *
41125 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
41189 GTC-GGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
*
41218 CCGCACCCAACTCTC-GCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
41282 GTC-GGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * * * *** * * ***
41311 CCGTCTGGGTTTGC-C-GAT-GGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAG
1 CCG-CACCCAACGCTCGGCTCTGTG--CG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAG
* * *
41371 GCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
60 G-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
* *
41408 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
41472 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
41502 CCGCACCC
1 CCGCACCC
41510 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 54, Indels: 32
0.72 0.18 0.10
Matches are distributed among these distances:
92 30 0.14
93 62 0.28
94 44 0.20
95 37 0.17
96 20 0.09
97 25 0.11
98 3 0.01
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:41330 original size:32 final size:32
Alignment explanation
Indices: 41271--41403 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
41261 CCTGGGGTTG
* *
41271 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
41302 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
41334 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
41366 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
41399 CCGAG
1 CCGAG
41404 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:41391 original size:65 final size:63
Alignment explanation
Indices: 41271--41403 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
41261 CCTGGGGTTG
* * * * *
41271 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
41334 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
41399 CCGAG
1 CCGAG
41404 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:41497 original size:32 final size:32
Alignment explanation
Indices: 41461--41565 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
41451 CCTGGGGTTG
41461 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
41493 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
41524 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
41556 CCGAGG-ACCC
1 CCGAGGCACCC
41566 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:41516 original size:63 final size:63
Alignment explanation
Indices: 41438--41572 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
41428 GTGCGGCACT
*
41438 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
41501 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
41564 CCCGCACCC
1 CCCGCACCC
41573 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:41530 original size:31 final size:31
Alignment explanation
Indices: 41438--41535 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
41428 GTGCGGCACT
41438 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
41469 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
41501 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
41532 CCCG
1 CCCG
41536 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:41536 original size:190 final size:190
Alignment explanation
Indices: 41196--41561 Score: 501
Period size: 190 Copynumber: 1.9 Consensus size: 190
41186 CCCGTCGGTG
* *
41196 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGCTCTGTGCGGCACTCCCGCACCCGTGG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGCTCTGTGCGGCACTCCCGCACCCGTGG
*** *
41261 CCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCC
66 CCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
* * *
41326 GATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 GAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
41386 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTC-GCTCTGTGCGGCACTCCCGCACCCGT
* *
41449 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-T
64 GGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTT
* * *
41512 GGCCTG-GGGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
127 GGCC-GAGGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGG
41562 ACCCCGCACC
Statistics
Matches: 155, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
189 11 0.07
190 113 0.73
191 31 0.20
ACGTcount: A:0.13, C:0.35, G:0.36, T:0.17
Consensus pattern (190 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGCTCTGTGCGGCACTCCCGCACCCGTGG
CCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
GAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:41678 original size:32 final size:32
Alignment explanation
Indices: 41619--41750 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
41609 CCTGGGGTTG
* *
41619 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
41650 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
41682 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
41714 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
41746 CCGAG
1 CCGAG
41751 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:41686 original size:158 final size:159
Alignment explanation
Indices: 41302--41721 Score: 532
Period size: 158 Copynumber: 2.7 Consensus size: 159
41292 CCGATGGTGA
* * * *
41302 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * *
41367 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGAGG-CACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
41431 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
41461 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * *
41523 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
41585 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
41619 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* *
41683 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
41722 ACCCGCCTGG
Statistics
Matches: 221, Mismatches: 30, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
157 64 0.29
158 114 0.52
159 43 0.19
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:41760 original size:158 final size:156
Alignment explanation
Indices: 41302--41885 Score: 459
Period size: 158 Copynumber: 3.6 Consensus size: 156
41292 CCGATGGTGA
* * * *
41302 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *
41367 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG-
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC-CACCCACCAAAGTTCGG--ATGTGC
41431 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGC-CTCCCGCACCCGTGGCCTGGGGTTG
* * * * *** * *
41461 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * * * * *
41523 G-CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-CCGCACCCAACTCTCGGCTC
63 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG-CCACC-CACCAAAGT-TCGGATG
*
41585 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
125 TG-CCGG-CCTCCCGCACCCGTGGCCTGGGGTTG
41619 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *** *
41683 CGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGTTGCCGATGGTGAC
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTT-CGGAT-GTG-C
* * * *
41747 CGAGCCTCACGCACCAACGCTCGGTTCTGTGCGGCACTC
128 CG-GCCTCCCGCACC--CG-T-GG-CCTG-G-GG--TTG
* *** * * *
41786 CCTCA-CCAATGGCCTGGGGTTGCCGATGGTGACCGAGACACCCGTATGGTTTTGCCGATGGTGA
1 CC-GAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
41850 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
65 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
41886 GGGCTCACGC
Statistics
Matches: 338, Mismatches: 57, Indels: 50
0.76 0.13 0.11
Matches are distributed among these distances:
156 6 0.02
157 75 0.22
158 116 0.34
159 42 0.12
160 2 0.01
161 1 0.00
162 2 0.01
163 3 0.01
164 1 0.00
165 2 0.01
167 8 0.02
168 52 0.15
169 28 0.08
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (156 bp):
CCGAGCCACCCGTCTGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTTCGGATGTGCCGG
CCTCCCGCACCCGTGGCCTGGGGTTG
Found at i:41874 original size:33 final size:32
Alignment explanation
Indices: 41797--41885 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
41787 CTCACCAATG
*
41797 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
41829 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
41862 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
41886 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:50224 original size:32 final size:32
Alignment explanation
Indices: 50188--50318 Score: 160
Period size: 32 Copynumber: 4.2 Consensus size: 32
50178 CCTGGGGTTG
* * *
50188 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
50220 CCGAGACA-CC--CTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
50249 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
50281 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
50314 CCGAG
1 CCGAG
50319 CCTCACGCAC
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
29 25 0.29
30 2 0.02
31 2 0.02
32 29 0.34
33 27 0.32
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:50283 original size:61 final size:64
Alignment explanation
Indices: 50188--50318 Score: 169
Period size: 61 Copynumber: 2.1 Consensus size: 64
50178 CCTGGGGTTG
* * * *
50188 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGA-G-ACAC-CCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCACACGCCTGGGATTGCCGATGGTGA
* * *
50249 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGG-CACACGCCTGGGATTGCCGATGGTGA
50314 CCGAG
1 CCGAG
50319 CCTCACGCAC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
61 31 0.53
62 1 0.02
64 3 0.05
65 24 0.41
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (64 bp):
CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCACACGCCTGGGATTGCCGATGGTGA
Found at i:50463 original size:62 final size:63
Alignment explanation
Indices: 50353--50485 Score: 243
Period size: 62 Copynumber: 2.1 Consensus size: 63
50343 GTGCGGCACT
*
50353 CCCGCA-CCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
50415 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
50477 CCCGCACCC
1 CCCGCACCC
50486 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 39 0.57
63 30 0.43
ACGTcount: A:0.11, C:0.37, G:0.39, T:0.14
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:50473 original size:31 final size:32
Alignment explanation
Indices: 50375--50478 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
50365 CCTGGGGTTG
*
50375 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
50407 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
50438 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
50469 CCGAGG-ACCC
1 CCGAGGCACCC
50479 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 7 0.13
31 32 0.59
32 15 0.28
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:50590 original size:32 final size:32
Alignment explanation
Indices: 50531--50662 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
50521 CCTGGGGTTG
* *
50531 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
50562 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
50594 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
50626 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
50658 CCGAG
1 CCGAG
50663 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:50598 original size:156 final size:157
Alignment explanation
Indices: 50220--50633 Score: 499
Period size: 156 Copynumber: 2.7 Consensus size: 157
50210 CCGATGGTGA
* * *
50220 CCGAGACACCC-T-GGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACC
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
* * *
50283 GAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTGC
66 GAGG-CACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
*
50347 GGCACTCCCGCACCGTGGCCTGGGGTTG
130 GGAACTCCCGCACCGTGGCCTGGGGTTG
* * * *** * *
50375 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* *
50437 G-CCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
62 GACCGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
50498 TGTCCGGAACTCCCGCACCCGT-GCCTGGGGTTG
125 TGTCCGGAACTCCCGCA-CCGTGGCCTGGGGTTG
*
50531 CCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
* *
50596 GAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 GAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
50634 ACCCGCCTGG
Statistics
Matches: 217, Mismatches: 27, Indels: 29
0.79 0.10 0.11
Matches are distributed among these distances:
155 65 0.30
156 83 0.38
157 41 0.19
158 28 0.13
ACGTcount: A:0.14, C:0.35, G:0.35, T:0.17
Consensus pattern (157 bp):
CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
GAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCCG
GAACTCCCGCACCGTGGCCTGGGGTTG
Found at i:59169 original size:32 final size:32
Alignment explanation
Indices: 59110--59242 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
59100 CCTGGGGTTG
* *
59110 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
59141 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
59173 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
59205 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
59238 CCGAG
1 CCGAG
59243 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:59230 original size:65 final size:63
Alignment explanation
Indices: 59110--59242 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
59100 CCTGGGGTTG
* * * * *
59110 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
59173 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
59238 CCGAG
1 CCGAG
59243 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:59336 original size:31 final size:32
Alignment explanation
Indices: 59301--59403 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
59291 CTGGGGGTTG
59301 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** *
59332 CCGAGGCCCCCG-CACCCGTGGCC--TGGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCCGAT-GG-TGA
*
59362 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
59394 CCGAGG-ACCC
1 CCGAGGCACCC
59404 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
29 1 0.02
30 14 0.26
31 30 0.56
32 8 0.15
33 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:59374 original size:61 final size:63
Alignment explanation
Indices: 59277--59410 Score: 236
Period size: 62 Copynumber: 2.1 Consensus size: 63
59267 GTGCGGCACT
*
59277 CCCGCACCCGTGGCCTGGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCT-GGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
59340 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
59402 CCCGCACCC
1 CCCGCACCC
59411 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
61 20 0.29
62 33 0.48
63 16 0.23
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:59393 original size:189 final size:189
Alignment explanation
Indices: 59035--59399 Score: 499
Period size: 189 Copynumber: 1.9 Consensus size: 189
59025 CCGTCGGGTG
* *
59035 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
59100 CCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCC
66 CCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
* *
59165 GATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 GA-GGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
59225 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
59288 GGCCTGGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-T
65 -GCCT-GGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTT
* * *
59351 GGCCTG-GGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG
127 GGCC-GAGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGG
59400 ACCCCGCACC
Statistics
Matches: 155, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
189 72 0.46
190 33 0.21
191 50 0.32
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (189 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
CCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGCC
GAGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:59514 original size:31 final size:31
Alignment explanation
Indices: 59457--59588 Score: 192
Period size: 32 Copynumber: 4.2 Consensus size: 31
59447 CCTGGGGTTG
* *
59457 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTC-TGGGTTGCCGATGGTGA
*
59489 CCGAGACACCCGTCTGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTGCCGATGGTGA
59520 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGG-TTGCCGATGGTGA
* *
59552 CCGAGGCCACCCGCCTGGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTGCCGATGGTGA
59584 CCGAG
1 CCGAG
59589 CCTCACGCAC
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
31 33 0.36
32 47 0.51
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (31 bp):
CCGAGACACCCGTCTGGGTTGCCGATGGTGA
Found at i:59539 original size:157 final size:157
Alignment explanation
Indices: 59141--59559 Score: 519
Period size: 157 Copynumber: 2.6 Consensus size: 157
59131 CCGATGGTGA
*
59141 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGG-TTTGCC-ATGGTGAC
* * * *
59206 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
63 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
59270 CGGCACTCCCGCACCCGTGGCCTGGGGGTTG
127 CGGAACTCCCGCACCCGTGGCCTGGGGGTTG
* * * * ** *
59301 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCGCACCCG-TGGCC-TGGGTTG-C
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCG-TCTGGTTTGCCAT-GG-TGAC
* * * *
59363 CGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCTGT
63 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTCTGT
59426 CCGGAACTCCCGCACCCGTGGCCT-GGGGTTG
126 CCGGAACTCCCGCACCCGTGGCCTGGGGGTTG
*
59457 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGTTTGCCGATGGTGACC
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGTTTGCC-ATGGTGACC
*
59522 GAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
64 GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
59560 ACCCGCCTGG
Statistics
Matches: 222, Mismatches: 26, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
156 55 0.25
157 80 0.36
158 45 0.20
159 27 0.12
160 15 0.07
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (157 bp):
CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGTTTGCCATGGTGACCGA
GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCCGGA
ACTCCCGCACCCGTGGCCTGGGGGTTG
Found at i:59556 original size:63 final size:64
Alignment explanation
Indices: 59457--59588 Score: 203
Period size: 63 Copynumber: 2.1 Consensus size: 64
59447 CCTGGGGTTG
* * *
59457 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGA-GACACCCGTCTGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGGACACCCGCCTGGGTTGCCGATGGTGA
* * *
59520 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGGACACCCGCCTGGGTTGCCGATGGTGA
59584 CCGAG
1 CCGAG
59589 CCTCACGCAC
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
63 33 0.53
64 29 0.47
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (64 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGGACACCCGCCTGGGTTGCCGATGGTGA
Found at i:59639 original size:346 final size:345
Alignment explanation
Indices: 59010--59649 Score: 1149
Period size: 346 Copynumber: 1.9 Consensus size: 345
59000 CAATGGACTG
* *
59010 GGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
* * *
59075 TCTGTGCGGCACTCCCGCACCCGTGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTG
66 TCTGTCCGGAACTCCCGCACCCGTGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTG
59140 ACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGA
131 ACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGA
59205 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
196 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
**
59270 CGGCACTCCCGCACCCGTGGCCTGGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCG
261 CGGCACTCCCGCACCAATGGCCT-GGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCG
59335 AGGCCCCCGCACCCGTGGCCT
325 AGGCCCCCGCACCCGTGGCCT
59356 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
1 GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
59421 TCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGG
66 TCTGTCCGGAACTCCCGCACCCGT-GCCTGGGGTTGCCGAGCCACCCGTC-GGGGTTGCCGATGG
* *
59486 TGACCGAGACACCCGTCT-GGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
129 TGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGT
59550 GACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
194 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTG
*
59614 TGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
259 TGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
59650 TGGTGACCGA
Statistics
Matches: 282, Mismatches: 10, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
345 11 0.04
346 150 0.53
347 89 0.32
348 32 0.11
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (345 bp):
GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGC
TCTGTCCGGAACTCCCGCACCCGTGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTG
ACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGA
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
CGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGCCT
Found at i:59710 original size:31 final size:31
Alignment explanation
Indices: 59635--59722 Score: 113
Period size: 31 Copynumber: 2.8 Consensus size: 31
59625 CTCACCAATG
*
59635 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCG-GACACCC
** ** *
59667 GTATGGTTTTGCCGATGGTGACCGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGGACACCC
59698 GCCTGGGATTGCCGATGGTGACCGG
1 GCCTGGGATTGCCGATGGTGACCGG
59723 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 27 0.57
32 20 0.43
ACGTcount: A:0.14, C:0.28, G:0.38, T:0.20
Consensus pattern (31 bp):
GCCTGGGATTGCCGATGGTGACCGGACACCC
Found at i:68009 original size:95 final size:93
Alignment explanation
Indices: 67854--68239 Score: 350
Period size: 95 Copynumber: 4.1 Consensus size: 93
67844 TGCGAGGCTG
* ** *
67854 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
67919 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGA-GCCC
* *
67949 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
68014 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTC-GGGGTTGCCGATGGTGACCGAG-CCC
* ******* * ** ** * *** * * ***
68044 CCTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGCC
1 CCGCACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-C
* *
68106 ACCCGCCTGGGATTGCCGATGGTGACCGAGCCTC
62 ACCCGTC-GGGGTTGCCGATGGTGACCGAGCC-C
*
68140 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
68203 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGA-GCCC
68232 CCGCACCC
1 CCGCACCC
68240 GTGGCCTGGG
Statistics
Matches: 220, Mismatches: 59, Indels: 26
0.72 0.19 0.09
Matches are distributed among these distances:
92 25 0.11
93 12 0.05
94 23 0.10
95 113 0.51
96 47 0.21
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (93 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGCCC
Found at i:68060 original size:31 final size:32
Alignment explanation
Indices: 68003--68135 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
67993 CCTGGGGTTG
* * *
68003 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
68035 CCGAGACACCC-TCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
68066 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
68098 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
68131 CCGAG
1 CCGAG
68136 CCTCACGCAC
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
31 29 0.33
32 33 0.37
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:68102 original size:63 final size:65
Alignment explanation
Indices: 68003--68135 Score: 180
Period size: 63 Copynumber: 2.1 Consensus size: 65
67993 CCTGGGGTTG
* * * * *
68003 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGA-GACACCC-TCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACACCCGCCTGGGATTGCCGATGGTGA
* * *
68066 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACACCCGCCTGGGATTGCCGATGGTGA
68131 CCGAG
1 CCGAG
68136 CCTCACGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 31 0.52
64 6 0.10
65 23 0.38
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (65 bp):
CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:68227 original size:31 final size:32
Alignment explanation
Indices: 68192--68295 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
68182 GCCTGGGTTG
68192 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
68223 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
68254 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
68286 CCGAGG-ACCC
1 CCGAGGCACCC
68296 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:68266 original size:62 final size:62
Alignment explanation
Indices: 68170--68302 Score: 241
Period size: 63 Copynumber: 2.1 Consensus size: 62
68160 GTGCGGCACT
*
68170 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
68231 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
68294 CCCGCACCC
1 CCCGCACCC
68303 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
61 16 0.23
62 20 0.29
63 33 0.48
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:68330 original size:156 final size:157
Alignment explanation
Indices: 68098--68384 Score: 447
Period size: 156 Copynumber: 1.8 Consensus size: 157
68088 CCAATGGTGA
* * *
68098 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
68163 CGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGA
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
68227 GGCCCCCGCACCCGTGGCCTGGGGTTG
131 GGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
68254 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
68316 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
68381 CGAG
128 CGAG
68385 ACACCCGTCT
Statistics
Matches: 119, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
155 31 0.26
156 45 0.38
157 43 0.36
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (157 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:68408 original size:32 final size:32
Alignment explanation
Indices: 68349--68480 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
68339 CCTGGGGTTG
* *
68349 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
68380 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
68412 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
68444 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
68476 CCGAG
1 CCGAG
68481 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:68431 original size:157 final size:157
Alignment explanation
Indices: 68035--68451 Score: 508
Period size: 157 Copynumber: 2.7 Consensus size: 157
68025 CCGATGGTGA
* * *
68035 CCGAGACACCC-TCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
68099 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
65 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
68163 CGGCACTCCCGCACCCGTGGCCTGGGTTG
129 CGGAACTCCCGCACCCGTGGCCTGGGTTG
* * * *** * *
68192 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTTG
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-TG
* * * *
68254 -CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
63 ACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTCT
68316 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 GTCCGGAACTCCCGCACCCGTGGCCT-GGGTTG
*
68349 CCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
1 CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
*
68414 GAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
68452 ACCCGCCTGG
Statistics
Matches: 218, Mismatches: 30, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
155 32 0.15
156 50 0.23
157 92 0.42
158 44 0.20
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (157 bp):
CCGAGACACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCCG
GAACTCCCGCACCCGTGGCCTGGGTTG
Found at i:68538 original size:346 final size:346
Alignment explanation
Indices: 67885--68541 Score: 1165
Period size: 346 Copynumber: 1.9 Consensus size: 346
67875 GTGCGGCACT
* *
67885 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
* * *
67950 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
68015 TCGGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
131 TCGGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
68080 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
196 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
**
68145 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGG
261 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGAGGCACCCGTCGGGG
68210 TTGCCGATGGTGACCGAGGCC
326 TTGCCGATGGTGACCGAGGCC
** *
68231 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
68296 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
68361 TC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
131 TCGGGGGTTGCCGATGGTGACCGAGACACCC-TCTGGGTTTGCCGATGGTGACCGAGACACCCGT
* *
68425 CTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGC
195 CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
*
68489 ACCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
260 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCT-GGGTTGCCGA
68542 TGGTGACCGA
Statistics
Matches: 296, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
345 93 0.31
346 203 0.69
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (346 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
TCGGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGAGGCACCCGTCGGGG
TTGCCGATGGTGACCGAGGCC
Found at i:68604 original size:33 final size:32
Alignment explanation
Indices: 68527--68615 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
68517 CTCACCAATG
*
68527 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
68559 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
68592 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
68616 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:76972 original size:32 final size:32
Alignment explanation
Indices: 76936--77069 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
76926 CCTGGGGTTG
* * *
76936 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
76968 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
77000 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
77032 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
77065 CCGAG
1 CCGAG
77070 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:77162 original size:31 final size:31
Alignment explanation
Indices: 77127--77229 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
77117 CCTGGGGTTG
77127 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* *** * *
77158 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTC-GGGGTTGCC-GATGG-TGA
77189 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
77220 CCGAGG-ACCC
1 CCGAGGCACCC
77230 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 8 0.15
31 42 0.78
32 4 0.07
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.14
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:77180 original size:62 final size:62
Alignment explanation
Indices: 77104--77236 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
77094 GTGCGGCACT
*
77104 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
77166 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
77228 CCCGCACCC
1 CCCGCACCC
77237 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:77261 original size:156 final size:158
Alignment explanation
Indices: 77032--77319 Score: 451
Period size: 156 Copynumber: 1.8 Consensus size: 158
77022 CCAATGGTGA
* *
77032 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
77097 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
77161 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
77189 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
77250 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
77315 CCGAG
128 CCGAG
77320 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
155 24 0.20
156 66 0.55
157 30 0.25
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:77325 original size:32 final size:32
Alignment explanation
Indices: 77283--77414 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
77273 CCTGGGGTTG
* *
77283 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
77315 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
77347 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
77379 CCGAGGCCACCCGCCT-GGGTTGCCGAT-GTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
77410 CCGAG
1 CCGAG
77415 CCTCACGCAC
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
30 1 0.01
31 8 0.09
32 75 0.81
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:77538 original size:33 final size:32
Alignment explanation
Indices: 77461--77549 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
77451 CTCACCAATG
*
77461 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
77493 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
77526 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
77550 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Done.