genome.fa.s9487.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009487.1 Hibiscus syriacus cultivar Beakdansim tig00114590_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58647

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4905--4992	33	2.7	31	81	6	113	20	36	28	14	1.92
5039--5160	32	3.9	31	90	5	176	19	38	28	13	1.89
5039--5161	62	2.0	61	88	4	185	19	38	28	13	1.90
5256--5348	31	3.0	31	65	14	82	13	40	36	8	1.76
5215--5348	62	2.1	63	97	1	252	13	39	36	10	1.79
5100--5325	94	2.4	94	70	11	235	15	37	34	12	1.86
5383--5516	32	4.2	32	89	0	187	17	35	30	15	1.92
5278--5651	93	4.0	93	72	11	346	17	34	35	12	1.88
13792--13880	33	2.8	32	82	1	115	20	37	28	14	1.92
13927--14059	32	4.2	32	93	1	205	18	36	30	14	1.90
14106--14239	63	2.1	63	97	1	252	13	39	36	10	1.79
13991--14217	95	2.4	94	71	10	244	15	37	34	12	1.85
13956--14375	158	2.7	158	81	5	535	17	35	34	13	1.89
14274--14407	32	4.2	32	89	0	187	17	35	30	15	1.92
13866--14525	348	1.9	348	95	0	1196	17	34	34	13	1.88
14169--14556	95	4.1	94	72	10	349	17	34	36	12	1.88
22747--22835	33	2.8	32	82	1	115	20	37	28	14	1.92
22882--23014	32	4.2	32	93	1	205	18	36	30	14	1.90
23098--23195	31	3.1	31	66	13	92	13	39	37	9	1.76
23061--23195	63	2.1	63	98	0	261	13	39	37	10	1.79
22946--23172	95	2.4	94	71	10	244	15	37	34	12	1.85
22978--23267	158	1.8	158	89	4	460	15	35	36	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23072--23438	190	1.9	191	85	6	512	17	35	34	12	1.87
23230--23362	32	4.2	32	89	1	187	18	35	30	15	1.92
23230--23362	65	2.1	63	87	2	185	18	35	30	15	1.92
22821--23480	348	1.9	348	95	0	1187	17	34	35	13	1.88
23124--23511	95	4.1	94	72	10	358	17	33	36	12	1.88
31717--31805	33	2.8	32	82	1	115	20	37	28	14	1.92
31852--31984	32	4.2	32	93	1	205	18	36	30	14	1.90
32068--32165	31	3.1	31	66	13	92	13	39	37	9	1.76
32031--32165	63	2.1	63	98	0	261	13	39	37	10	1.79
31916--32142	95	2.4	94	71	10	244	15	37	34	12	1.85
31948--32237	158	1.8	158	89	4	460	15	35	36	12	1.85
32200--32333	32	4.2	32	89	0	187	17	35	30	15	1.92
32094--32482	95	4.1	95	72	9	369	16	33	36	12	1.87
31791--32451	349	1.9	348	95	0	1196	17	34	34	13	1.88
46448--46536	33	2.8	32	82	1	115	20	37	28	14	1.92
46583--46715	32	4.2	32	93	1	205	18	36	30	14	1.90
46799--46896	31	3.1	31	66	13	92	13	39	37	9	1.76
46762--46896	63	2.1	63	98	0	261	13	39	37	10	1.79
46647--46873	95	2.4	94	71	10	244	15	37	34	12	1.85
46679--46968	158	1.8	158	89	4	460	15	35	36	12	1.85
46931--47064	32	4.2	32	89	0	187	17	35	30	15	1.92
46825--47213	95	4.1	95	72	9	369	16	33	36	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46522--47182	349	1.9	348	95	0	1196	17	34	34	13	1.88
55415--55503	33	2.8	32	82	1	115	20	37	28	14	1.92
55550--55681	32	4.2	32	91	3	196	18	37	30	14	1.90
55728--55859	61	2.1	62	97	1	248	13	38	37	9	1.78
55647--55931	155	1.8	157	88	6	445	15	35	37	11	1.84
55894--56027	32	4.2	32	89	0	187	17	35	30	15	1.92
55489--56130	346	1.9	344	95	1	1178	17	34	34	12	1.88
55790--56182	94	4.2	94	71	18	323	17	34	35	12	1.87

Tables:   1

The End!