genome.fa.s9489.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009489.1 Hibiscus syriacus cultivar Beakdansim tig00114597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33343

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2501--2588	31	2.8	31	80	3	104	20	37	27	14	1.92
2501--2748	64	3.8	63	68	21	177	20	33	31	15	1.93
2635--2767	32	4.2	32	93	1	205	18	36	30	14	1.90
2848--2945	31	3.1	31	66	13	92	13	39	37	9	1.76
2812--2945	63	2.1	63	97	1	252	13	38	37	10	1.79
2979--3108	31	4.2	30	87	4	152	18	33	31	16	1.93
2664--3077	155	2.7	154	80	5	503	17	33	35	13	1.89
11311--11390	31	2.5	33	86	8	103	21	35	28	15	1.93
11445--11566	32	4.0	30	87	9	158	18	36	31	14	1.91
11453--11566	31	3.8	29	86	10	140	18	35	31	14	1.90
11454--11566	60	1.9	60	87	7	167	18	35	31	14	1.91
11771--11899	31	4.2	32	84	5	158	18	35	30	15	1.92
11865--12044	93	2.0	93	84	6	242	17	33	36	11	1.86
16160--16513	175	2.0	179	95	3	646	19	28	30	20	1.97
20258--20342	31	2.8	32	76	7	95	21	38	25	14	1.91
20385--20513	32	4.2	32	91	3	185	17	37	29	14	1.90
20383--20513	62	2.1	62	85	5	185	17	37	30	14	1.90
20409--20822	156	2.7	155	78	11	449	17	35	33	14	1.89
20559--20685	63	2.0	63	98	0	245	14	40	34	10	1.79
20726--20853	32	4.1	32	80	9	140	17	37	27	17	1.92
20730--20856	61	2.1	62	83	4	159	18	37	26	17	1.93
20328--20970	341	1.9	336	89	6	1001	17	35	33	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29193--29314	32	3.9	31	90	5	176	19	38	28	13	1.89
29193--29315	62	2.0	61	88	4	185	19	38	28	13	1.90
29367--29499	62	2.1	62	95	2	241	13	39	36	10	1.79
29532--29639	30	3.6	30	81	10	114	19	36	26	17	1.94
29216--29627	154	2.7	154	77	9	441	17	35	33	13	1.88
29532--29658	31	4.2	31	81	9	120	17	37	28	16	1.91
29532--29658	61	2.1	61	79	8	134	17	37	28	16	1.91
29137--29774	337	1.9	339	91	4	1049	17	35	33	13	1.88
29623--29805	94	2.0	93	90	3	287	16	35	36	12	1.86

Tables:   1

The End!