Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000949.1 Hibiscus syriacus cultivar Beakdansim tig00001899_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58881

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2998--3085
30
3.0
29
73
9
81
55
5
15
22
1.61
3046--3242
27
6.9
29
73
10
81
59
8
11
20
1.57
3133--3210
27
2.9
27
82
1
93
53
10
12
23
1.69
3180--3270
29
3.1
29
86
7
123
62
13
7
16
1.52
3180--3270
30
3.1
28
84
10
112
62
13
7
16
1.52
4628--4673
3
15.3
3
91
8
76
65
0
0
34
0.93
4634--4683
21
2.4
21
93
3
84
62
0
2
36
1.07
5076--5256
92
2.0
91
84
7
242
23
16
33
27
1.95
5623--5705
35
2.4
35
82
6
105
40
15
18
25
1.89
5623--5734
35
3.1
36
78
7
102
40
13
16
30
1.86
7391--8027
81
8.0
81
87
3
864
30
20
13
36
1.91
8165--8290
54
2.3
54
82
2
155
26
23
21
29
1.99
8703--8770
18
3.5
19
78
10
66
26
26
13
33
1.93
10852--10889
2
19.5
2
89
5
60
44
0
0
55
0.99
16019--16176
55
2.9
54
84
6
196
24
23
20
31
1.98
16083--16671
55
10.7
55
87
3
760
27
25
15
31
1.96
17671--17722
8
6.5
8
84
8
61
9
9
0
80
0.90
17678--17722
16
2.8
16
89
0
72
11
6
0
82
0.84
31537--31944
81
5.0
81
88
0
573
31
20
11
36
1.89
31537--31944
163
2.5
162
87
0
591
31
20
11
36
1.89
32583--32826
45
5.4
46
90
3
347
29
24
11
34
1.90
32583--32826
90
2.7
90
91
2
400
29
24
11
34
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33086--33675
67
8.8
67
89
2
857
29
27
14
28
1.95
33086--33675
202
2.9
199
89
2
880
29
27
14
28
1.95
33876--34188
54
5.7
55
87
4
438
32
19
12
34
1.90
33876--34183
109
2.8
109
90
3
478
32
20
12
34
1.90
36201--36257
22
2.6
22
86
8
73
31
24
15
28
1.96
37433--37457
2
12.5
2
100
0
50
48
0
0
52
1.00
39259--39499
29
8.3
29
76
5
209
49
16
4
29
1.66
39473--39586
58
2.0
58
82
6
142
45
18
6
29
1.73
40068--40105
20
1.9
20
89
10
60
21
7
10
60
1.54
46690--46922
29
8.1
29
78
3
220
48
14
4
32
1.63
46691--46916
115
2.0
115
82
5
278
49
14
3
32
1.62
46695--46941
86
2.8
86
82
3
228
49
13
4
32
1.63
51433--51700
30
9.1
28
73
11
135
55
10
12
21
1.66
51550--51710
87
1.9
87
80
1
189
55
11
11
21
1.66
52574--52613
14
2.8
14
84
3
53
2
2
12
82
0.87
53043--53078
3
12.0
3
100
0
72
66
0
0
33
0.92
55906--55952
19
2.5
19
89
0
67
21
25
23
29
1.99
55922--55970
19
2.6
19
90
0
71
22
18
24
34
1.96
56934--57004
29
2.4
29
97
0
133
23
8
26
40
1.83
58546--58601
28
2.0
28
96
0
103
30
16
14
39
1.88

Tables:   1

The End!