genome.fa.s9490.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009490.1 Hibiscus syriacus cultivar Beakdansim tig00114598_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62997

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1764--1832	24	2.9	23	86	4	93	18	21	24	34	1.96
1772--1832	23	2.6	24	89	2	88	19	21	24	34	1.96
2488--2653	90	1.8	90	88	1	251	27	24	26	22	2.00
10499--10547	11	4.5	11	92	0	62	83	10	6	0	0.80
10499--10556	22	2.8	21	84	7	73	81	12	6	0	0.88
10506--10556	11	4.6	11	92	0	75	78	13	7	0	0.96
10499--10563	20	3.1	22	85	8	75	78	13	7	0	0.95
15653--15704	21	2.6	21	90	6	81	34	13	5	46	1.67
23996--24108	36	3.2	36	89	1	165	33	36	2	27	1.71
23996--24094	13	8.3	11	73	23	76	32	36	2	29	1.69
24079--24147	33	2.1	33	83	5	86	30	36	1	31	1.67
30950--31020	13	4.4	17	75	24	66	83	8	8	0	0.82
30951--31009	1	59.0	1	86	0	55	88	5	6	0	0.64
35160--35198	15	2.5	15	87	4	51	15	12	5	66	1.41
35399--35511	36	3.2	36	92	1	174	32	36	3	27	1.74
35399--35497	13	8.3	11	71	23	67	31	36	3	29	1.73
35400--35526	36	3.6	33	85	9	112	31	37	3	28	1.73
37414--37464	22	2.3	23	93	3	86	29	3	35	31	1.76
46529--46586	25	2.4	22	76	23	62	6	13	5	74	1.20
56623--56732	35	3.1	35	87	5	150	28	3	36	31	1.75
56636--56732	13	8.3	11	69	23	56	29	3	36	30	1.73
60964--61032	33	2.1	33	83	5	86	31	1	36	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61018--61114	13	8.0	12	72	22	62	28	3	37	30	1.73
61003--61115	36	3.2	36	92	1	174	27	3	36	32	1.74

Tables:   1

The End!