Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009494.1 Hibiscus syriacus cultivar Beakdansim tig00114681_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44583
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.23
Found at i:1163 original size:11 final size:11
Alignment explanation
Indices: 1147--1179 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
1137 CGATAATGTC
1147 TCGCCGGAGCA
1 TCGCCGGAGCA
*
1158 TCGCCGGAGCG
1 TCGCCGGAGCA
1169 TCGCCGGAGCA
1 TCGCCGGAGCA
1180 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:1627 original size:33 final size:33
Alignment explanation
Indices: 1564--1754 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
1554 ATGGCCCGGG
* * *
1564 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1596 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * *
1629 CTGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCCGATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * * *
1670 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1702 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1735 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
1755 TCACGCACAA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 38 0.29
33 62 0.47
35 4 0.03
37 1 0.01
38 4 0.03
40 1 0.01
41 21 0.16
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:1646 original size:65 final size:65
Alignment explanation
Indices: 1565--1754 Score: 175
Period size: 65 Copynumber: 2.8 Consensus size: 65
1555 TGGCCCGGGT
*
1565 TGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGAC
1 TGCCGATGGTGACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCACCCGCCTGGGAC
* * * * * *
1630 TGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGA-GACACCC
1 TGCCGATGGTGACCGAGACACCCG------T---CTGGGATTGCCGATGGTGACCGAGGCCACCC
* **
1694 GTCTGGGTT
57 GCCTGGGAC
* *
1703 TGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC
1 TGCCGATGGTGACCGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGC
1755 TCACGCACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 21
0.73 0.12 0.16
Matches are distributed among these distances:
65 42 0.43
66 1 0.01
71 1 0.01
73 28 0.29
74 26 0.27
ACGTcount: A:0.16, C:0.32, G:0.36, T:0.17
Consensus pattern (65 bp):
TGCCGATGGTGACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCACCCGCCTGGGAC
Found at i:1689 original size:106 final size:105
Alignment explanation
Indices: 1543--1762 Score: 404
Period size: 106 Copynumber: 2.1 Consensus size: 105
1533 CTGTGCGGCA
*
1543 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1608 ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
1648 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCC-GGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
1713 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG
65 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
*
1754 CTCACGCAC
1 CTCCCGCAC
1763 AAGCGGCCTG
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
105 18 0.16
106 93 0.84
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (105 bp):
CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
Found at i:1848 original size:169 final size:170
Alignment explanation
Indices: 1648--2229 Score: 1042
Period size: 169 Copynumber: 3.4 Consensus size: 170
1638 GTGACCGAGG
*
1648 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
1713 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGCGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
1777 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
1817 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1882 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
1947 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
*
1987 CTCCCGCACCAATGG-TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
2051 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
2116 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
2156 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
2221 GACCGAGGC
66 GACCGAGGC
2230 ACGCACACGT
Statistics
Matches: 396, Mismatches: 15, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
169 278 0.70
170 118 0.30
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:1908 original size:33 final size:33
Alignment explanation
Indices: 1839--1923 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
1829 TGGCCCGGGG
* * *
1839 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
1871 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1904 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
1924 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:2080 original size:33 final size:33
Alignment explanation
Indices: 2011--2092 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
2001 GTCGGGGTTG
* * * *
2011 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
2043 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
2076 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
2093 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:10166 original size:11 final size:11
Alignment explanation
Indices: 10150--10182 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
10140 CGATAATGTC
10150 TCGCCGGAGCA
1 TCGCCGGAGCA
*
10161 TCGCCGGAGCG
1 TCGCCGGAGCA
10172 TCGCCGGAGCA
1 TCGCCGGAGCA
10183 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:10636 original size:33 final size:33
Alignment explanation
Indices: 10573--10762 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
10563 TGGCCCGGGG
* * *
10573 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
10605 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * *
10638 CTGCCGATGGTGACCGAGGCTC-CCGCACCAATGGCCCGGG
1 TTGCCGATGGTGACCGAGGC-CACC-CGCC--T-G---GGA
* * * *
10678 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
10710 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
10743 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
10763 TCACGCACAA
Statistics
Matches: 131, Mismatches: 16, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
32 35 0.27
33 65 0.50
34 4 0.03
35 1 0.01
36 2 0.02
37 1 0.01
38 3 0.02
39 3 0.02
40 17 0.13
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:10698 original size:105 final size:106
Alignment explanation
Indices: 10551--10770 Score: 406
Period size: 105 Copynumber: 2.1 Consensus size: 106
10541 CTGTGCGGCA
*
10551 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
10616 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
10657 CTCCCGCACCAATGGCCC-GGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
10721 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
*
10762 CTCACGCAC
1 CTCCCGCAC
10771 AAGCGGCCTG
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
105 93 0.84
106 18 0.16
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (106 bp):
CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
Found at i:10851 original size:137 final size:136
Alignment explanation
Indices: 10503--10939 Score: 514
Period size: 137 Copynumber: 3.2 Consensus size: 136
10493 GTCGGGGGTT
10503 GCCGATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGGCC
1 GCCGATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGGCC
10568 CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCC
66 CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCA-CCGCC
** *
10633 TGGGACT
130 TAAGACG
* * **
10640 GCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGTTACCGATG-GTG-AC-CGAGACACC-
1 GCCGATGGTGACCGAGGCTCCCGCACCAA-CGCCC-GGTT-CTG-TGCG-GCACTCCCG-CACCA
* * * * * * *
10701 --CGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCT
60 ATGGCCCGGGGTTGCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGC-
10764 CA-CGCAC-AAG-CG
123 CACCGC-CTAAGACG
* *
10776 GCCTGATGGTGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGC
1 GCC-GATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGGC
10841 CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGC
65 CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCA-CCGC
** **
10906 CTTGGATT
129 CTAAGACG
*
10914 GCCGATGGTGACCGAGGCTCACGCAC
1 GCCGATGGTGACCGAGGCTCCCGCAC
10940 ACGGGGGCCT
Statistics
Matches: 247, Mismatches: 33, Indels: 40
0.77 0.10 0.12
Matches are distributed among these distances:
133 3 0.01
134 9 0.04
135 8 0.03
136 40 0.16
137 127 0.51
138 40 0.16
139 8 0.03
140 9 0.04
141 3 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (136 bp):
GCCGATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGGCC
CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCGCCT
AAGACG
Found at i:10880 original size:169 final size:170
Alignment explanation
Indices: 10657--11237 Score: 1042
Period size: 169 Copynumber: 3.4 Consensus size: 170
10647 GTGACCGAGG
*
10657 CTCCCGCACCAATGGCCC-GGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
10721 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGCGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
10785 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
10825 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
10890 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
10955 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
10995 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
11059 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
11124 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
11164 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
11229 GACCGAGGC
66 GACCGAGGC
11238 ACGCACACGT
Statistics
Matches: 397, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
168 18 0.05
169 260 0.65
170 119 0.30
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:10916 original size:33 final size:33
Alignment explanation
Indices: 10847--10931 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
10837 TGGCCCGGGG
* * *
10847 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
10879 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
10912 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
10932 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:11088 original size:33 final size:33
Alignment explanation
Indices: 11019--11100 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
11009 GCCGGGGTTG
* * * *
11019 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
11051 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
11084 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
11101 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:24720 original size:11 final size:11
Alignment explanation
Indices: 24704--24736 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
24694 CGATAATGTC
24704 TCGCCGGAGCA
1 TCGCCGGAGCA
*
24715 TCGCCGGAGCG
1 TCGCCGGAGCA
24726 TCGCCGGAGCA
1 TCGCCGGAGCA
24737 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:25190 original size:33 final size:33
Alignment explanation
Indices: 25127--25317 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
25117 TGGCCCGGGG
* * *
25127 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
25159 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * *
25192 CTGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCCGATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * * *
25233 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
25265 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
25298 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
25318 TCACGCACAA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 38 0.29
33 62 0.47
35 4 0.03
37 1 0.01
38 4 0.03
40 1 0.01
41 21 0.16
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:25244 original size:106 final size:106
Alignment explanation
Indices: 25105--25325 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
25095 CTGTGCGGCA
*
25105 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
25170 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
25211 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
25276 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
*
25317 CTCACGCAC
1 CTCCCGCAC
25326 AAGCGGCCTG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.16
Consensus pattern (106 bp):
CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
Found at i:25411 original size:169 final size:170
Alignment explanation
Indices: 25211--25792 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
25201 GTGACCGAGG
*
25211 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
25276 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGCGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
25340 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
25380 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
25445 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
25510 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
25550 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
25614 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
25679 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
25719 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
25784 GACCGAGGC
66 GACCGAGGC
25793 ACGCACACGT
Statistics
Matches: 398, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
169 279 0.70
170 119 0.30
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:25471 original size:33 final size:33
Alignment explanation
Indices: 25402--25486 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
25392 TGGCCCGGGG
* * *
25402 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
25434 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
25467 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
25487 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:25643 original size:33 final size:33
Alignment explanation
Indices: 25574--25655 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
25564 GCCGGGGTTG
* * * *
25574 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
25606 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
25639 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
25656 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:33724 original size:11 final size:11
Alignment explanation
Indices: 33708--33740 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
33698 CGATAATGTC
33708 TCGCCGGAGCA
1 TCGCCGGAGCA
*
33719 TCGCCGGAGCG
1 TCGCCGGAGCA
33730 TCGCCGGAGCA
1 TCGCCGGAGCA
33741 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:34192 original size:33 final size:33
Alignment explanation
Indices: 34129--34319 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
34119 TGGCCCGGGG
* * *
34129 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
34161 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * *
34194 CTGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCCGATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * * *
34235 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
34267 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
34300 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
34320 TCACGCACAA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 38 0.29
33 62 0.47
35 4 0.03
37 1 0.01
38 4 0.03
40 1 0.01
41 21 0.16
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:34242 original size:106 final size:106
Alignment explanation
Indices: 34107--34327 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
34097 CTGTGCGGCA
*
34107 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
34172 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
34213 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
34278 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
*
34319 CTCACGCAC
1 CTCCCGCAC
34328 AAGCGGCCTG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.16
Consensus pattern (106 bp):
CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
Found at i:34413 original size:169 final size:170
Alignment explanation
Indices: 34213--34794 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
34203 GTGACCGAGG
*
34213 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
34278 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGCGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
34342 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
34382 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
34447 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
34512 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
34552 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
34616 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
34681 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
34721 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
34786 GACCGAGGC
66 GACCGAGGC
34795 ACGCACACGT
Statistics
Matches: 398, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
169 279 0.70
170 119 0.30
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:34473 original size:33 final size:33
Alignment explanation
Indices: 34404--34488 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
34394 TGGCCCGGGG
* * *
34404 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
34436 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
34469 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
34489 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:34645 original size:33 final size:33
Alignment explanation
Indices: 34576--34657 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
34566 GCCGGGGTTG
* * * *
34576 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
34608 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
34641 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
34658 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:42692 original size:11 final size:11
Alignment explanation
Indices: 42676--42708 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
42666 CGATAATGTC
42676 TCGCCGGAGCA
1 TCGCCGGAGCA
*
42687 TCGCCGGAGCG
1 TCGCCGGAGCA
42698 TCGCCGGAGCA
1 TCGCCGGAGCA
42709 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:43156 original size:33 final size:33
Alignment explanation
Indices: 43093--43283 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
43083 ATGGCCCGGG
* * *
43093 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
43125 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * *
43158 CTGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCCGATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * * *
43199 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
43231 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
43264 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
43284 TCACGCACAA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 38 0.29
33 62 0.47
35 4 0.03
37 1 0.01
38 4 0.03
40 1 0.01
41 21 0.16
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:43217 original size:106 final size:105
Alignment explanation
Indices: 43072--43291 Score: 404
Period size: 106 Copynumber: 2.1 Consensus size: 105
43062 CTGTGCGGCA
*
43072 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
43137 ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
43177 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCC-GGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
43242 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG
65 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
*
43283 CTCACGCAC
1 CTCCCGCAC
43292 AAGCGGCCTG
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
105 18 0.16
106 93 0.84
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (105 bp):
CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
Found at i:43399 original size:167 final size:168
Alignment explanation
Indices: 43177--43752 Score: 1030
Period size: 167 Copynumber: 3.4 Consensus size: 168
43167 GTGACCGAGG
*
43177 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCC-GGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
43242 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGCGGCCTGATGGT
65 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGCCTGATGGT
*
43307 GACCGAGACTCCCGCACCAACGCTC-GTTCTGTGCGGCA
130 GACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
43345 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
43410 ACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGCCTGATGGTG
66 ACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGCCTGATGGTG
* *
43475 ACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 ACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
43513 CTCCCGCACCAATGG-CCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
* *
43577 ACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGCCTGATGGTG
66 ACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGCCTGATGGTG
43642 ACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 ACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
43680 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
43745 ACCGAGGC
66 ACCGAGGC
43753 ACGCACACGT
Statistics
Matches: 393, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
167 293 0.75
168 100 0.25
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (168 bp):
CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
ACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGCCTGATGGTG
ACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:43435 original size:33 final size:33
Alignment explanation
Indices: 43366--43450 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
43356 ATGGCCCGGG
* * *
43366 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
43398 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
43431 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
43451 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:43605 original size:33 final size:33
Alignment explanation
Indices: 43536--43617 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
43526 GGCCGGGTTG
* * * *
43536 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
43568 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
43601 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
43618 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Done.