genome.fa.s9495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009495.1 Hibiscus syriacus cultivar Beakdansim tig00114702_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65459

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1152--1255	29	3.6	29	79	7	122	31	6	18	43	1.76
2197--2360	42	3.9	41	88	5	215	18	21	25	34	1.96
2433--2470	19	2.0	19	100	0	76	21	10	26	42	1.85
7343--7397	28	1.9	29	85	10	78	40	20	5	34	1.75
7406--7446	17	2.3	18	87	4	57	14	19	43	21	1.87
7441--7465	9	2.8	9	100	0	50	36	28	24	12	1.91
40610--40708	10	10.3	9	79	12	90	15	28	27	29	1.96
40611--40708	19	5.1	19	79	16	87	14	28	27	29	1.95
40609--40683	29	2.5	30	89	8	118	17	26	26	29	1.97
40610--40708	29	3.4	28	84	8	101	15	28	27	29	1.96
40630--40734	9	11.3	9	73	14	63	14	32	28	24	1.94
40731--40788	5	10.8	5	78	14	62	18	51	22	6	1.70
40705--40795	22	4.0	22	94	5	146	17	47	24	10	1.80
40785--40815	7	4.4	7	100	0	62	16	29	29	25	1.96
47974--48072	10	10.3	9	79	12	90	15	28	27	29	1.96
47975--48072	19	5.1	19	79	16	87	14	28	27	29	1.95
47973--48047	29	2.5	30	89	8	118	17	26	26	29	1.97
47974--48072	29	3.4	28	84	8	101	15	28	27	29	1.96
47994--48098	9	11.3	9	73	14	63	14	32	28	24	1.94
48095--48152	5	10.8	5	78	14	62	18	51	22	6	1.70
48069--48159	22	4.0	22	94	5	146	17	47	24	10	1.80
48149--48179	7	4.4	7	100	0	62	16	29	29	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54637--54707	34	2.1	35	94	2	126	30	29	30	8	1.87
54790--54876	24	3.7	23	81	4	93	39	18	14	27	1.90
54786--54876	47	1.9	48	81	2	112	38	18	15	27	1.91
55989--56024	18	2.0	18	88	0	54	30	16	0	52	1.44
57207--57256	7	7.3	7	85	14	61	24	26	36	14	1.93
57227--57281	18	2.9	18	89	8	74	18	21	41	18	1.90
57235--57265	13	2.4	13	94	0	53	19	22	41	16	1.89
59379--59458	24	3.4	23	81	8	99	35	20	16	28	1.94
60587--60622	18	2.0	18	88	0	54	30	16	0	52	1.44
61796--61835	15	2.7	15	100	0	80	25	25	37	12	1.91
61796--61851	8	7.6	8	81	18	77	23	25	37	14	1.92
61819--61873	18	2.9	18	89	8	74	18	21	41	18	1.90
61827--61857	13	2.4	13	94	0	53	19	22	41	16	1.89

Tables:   1

The End!