genome.fa.s9496.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009496.1 Hibiscus syriacus cultivar Beakdansim tig00114708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61526

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044--1115	35	2.1	35	97	0	135	31	29	30	8	1.87
1198--1283	23	3.7	23	84	1	100	39	18	15	26	1.90
2412--2447	18	2.0	18	88	0	54	30	16	0	52	1.44
3633--3672	15	2.7	15	100	0	80	25	25	37	12	1.91
3614--3688	8	9.5	8	79	19	79	24	24	36	16	1.94
3656--3710	18	2.9	18	89	8	74	18	21	41	18	1.90
3664--3694	13	2.4	13	94	0	53	19	22	41	16	1.89
5695--5766	35	2.1	35	97	0	135	31	29	30	8	1.87
5851--5937	24	3.7	23	81	4	93	39	18	14	27	1.90
5847--5937	47	1.9	48	81	2	112	38	18	15	27	1.91
7066--7101	18	2.0	18	88	0	54	30	16	0	52	1.44
8293--8332	15	2.7	15	100	0	80	25	25	37	12	1.91
8274--8348	8	9.5	8	79	19	79	24	24	36	16	1.94
8316--8370	18	2.9	18	89	8	74	18	21	41	18	1.90
8324--8354	13	2.4	13	94	0	53	19	22	41	16	1.89
20312--20374	19	3.3	18	78	8	72	14	26	30	28	1.95
20321--20380	10	6.3	9	81	9	66	13	28	30	28	1.94
20394--20431	12	3.3	12	78	14	53	18	44	23	13	1.85
20388--20431	22	2.0	22	95	0	79	18	47	22	11	1.80
23514--24427	455	2.0	455	100	0	1828	28	19	12	39	1.88
33706--33768	19	3.4	18	85	8	90	14	28	28	28	1.95
33703--33768	9	7.0	9	83	8	78	13	27	30	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33703--33768	28	2.3	28	84	7	80	13	27	30	28	1.94
33765--33813	5	9.8	5	82	12	57	20	53	22	4	1.63
33776--33820	22	2.0	22	100	0	90	17	51	22	8	1.73
36005--36053	19	2.6	18	81	12	55	32	28	22	16	1.95
36006--36068	10	6.7	9	71	10	54	31	30	22	15	1.95
43116--43184	9	7.3	9	76	9	66	24	28	27	18	1.98
43122--43165	10	4.6	10	83	8	56	25	31	22	20	1.98
43122--43166	19	2.4	19	100	0	90	24	33	22	20	1.97
50290--50326	17	2.2	17	90	0	56	16	24	43	16	1.87
50352--50445	9	10.0	9	83	8	98	26	30	28	13	1.94
50352--50445	19	5.0	18	78	8	98	26	30	28	13	1.94
50358--50445	38	2.3	38	98	0	167	27	31	27	13	1.94
56428--56496	9	7.3	9	79	9	75	15	27	31	24	1.96
56427--56496	19	3.7	19	94	3	115	17	27	31	24	1.97
56490--56530	17	2.4	17	95	0	73	17	41	24	17	1.89
56520--56549	7	4.4	7	91	8	53	16	30	30	23	1.96
56520--56545	13	2.0	13	100	0	52	15	30	30	23	1.95
57409--57532	63	2.0	63	82	6	153	16	28	29	25	1.97

Tables:   1

The End!