genome.fa.s9498.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009498.1 Hibiscus syriacus cultivar Beakdansim tig00114886_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78854

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1428--1513	33	2.7	32	81	3	102	20	37	26	15	1.92
1559--1687	61	2.1	61	84	7	172	18	37	28	14	1.91
1559--1688	31	4.2	31	89	5	176	18	37	29	14	1.90
1590--1999	155	2.6	154	78	9	474	17	35	32	13	1.89
1735--1866	61	2.1	62	95	4	241	13	40	35	10	1.79
1901--2022	32	3.9	32	84	6	151	19	36	27	15	1.92
1504--2149	343	1.9	340	92	2	1100	17	35	33	13	1.89
1797--2180	95	4.1	95	69	13	308	17	34	35	13	1.88
10331--10419	33	2.8	32	82	1	115	20	37	28	14	1.92
10466--10598	32	4.2	32	93	1	205	18	36	30	14	1.90
10682--10779	31	3.1	31	66	13	92	13	39	37	9	1.76
10645--10779	63	2.1	63	98	0	261	13	39	37	10	1.79
10530--10756	95	2.4	94	71	10	244	15	37	34	12	1.85
10562--10851	158	1.8	158	89	4	460	15	35	36	12	1.85
10814--10947	32	4.2	32	89	0	187	17	35	30	15	1.92
10708--11096	95	4.1	95	72	9	369	16	33	36	12	1.87
10405--11065	349	1.9	348	95	0	1196	17	34	34	13	1.88
19296--19384	33	2.8	32	82	1	115	20	37	28	14	1.92
19431--19563	32	4.2	32	93	1	205	18	36	30	14	1.90
19647--19744	31	3.1	31	66	13	92	13	39	37	9	1.76
19610--19744	63	2.1	63	98	0	261	13	39	37	10	1.79
19495--19721	95	2.4	94	71	10	244	15	37	34	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19527--19816	158	1.8	158	89	4	460	15	35	36	12	1.85
19779--19912	32	4.2	32	89	0	187	17	35	30	15	1.92
19673--20061	95	4.1	95	72	9	369	16	33	36	12	1.87
19370--20030	349	1.9	348	95	0	1196	17	34	34	13	1.88
38574--38662	33	2.8	32	82	1	115	20	37	28	14	1.92
38709--38841	32	4.2	32	93	1	205	18	36	30	14	1.90
38925--39022	31	3.1	31	66	13	92	13	39	37	9	1.76
38888--39022	63	2.1	63	98	0	261	13	39	37	10	1.79
38773--38999	95	2.4	94	71	10	244	15	37	34	12	1.85
38805--39094	158	1.8	158	89	4	460	15	35	36	12	1.85
38899--39265	190	1.9	191	85	6	512	17	35	34	12	1.87
39057--39189	32	4.2	32	89	1	187	18	35	30	15	1.92
39057--39189	65	2.1	63	87	2	185	18	35	30	15	1.92
38648--39307	348	1.9	348	95	0	1187	17	34	35	13	1.88
38951--39338	95	4.1	94	72	10	358	17	33	36	12	1.88
47536--47624	33	2.8	32	82	1	115	20	37	28	14	1.92
47671--47803	32	4.2	32	93	1	205	18	36	30	14	1.90
47887--47983	31	3.1	31	66	16	92	13	39	38	9	1.77
47850--47983	62	2.1	63	97	1	252	13	38	37	10	1.79
47767--48055	157	1.8	158	88	5	451	15	35	36	12	1.85
48018--48151	32	4.2	32	89	0	187	17	35	30	15	1.92
47913--48297	92	4.1	94	71	12	315	16	33	36	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56503--56591	33	2.8	32	82	1	115	20	37	28	14	1.92
56638--56770	32	4.2	32	93	1	205	18	36	30	14	1.90
56854--56951	31	3.1	31	66	13	92	13	39	37	9	1.76
56817--56951	63	2.1	63	98	0	261	13	39	37	10	1.79
56702--56928	95	2.4	94	71	10	244	15	37	34	12	1.85
56734--57023	158	1.8	158	89	4	460	15	35	36	12	1.85
56986--57119	32	4.2	32	89	0	187	17	35	30	15	1.92
56880--57268	95	4.1	95	72	9	369	16	33	36	12	1.87
56577--57237	349	1.9	348	95	0	1196	17	34	34	13	1.88
70874--70962	33	2.8	32	82	1	115	20	37	28	14	1.92
71009--71141	32	4.2	32	93	1	205	18	36	30	14	1.90
71188--71320	61	2.1	63	97	2	252	13	39	36	10	1.79
71225--71324	31	3.3	31	65	18	91	13	41	36	10	1.77
71199--71562	186	1.9	192	84	7	496	17	36	34	12	1.87
71353--71486	32	4.2	32	89	0	187	17	35	30	15	1.92
71251--71635	95	4.1	95	71	11	317	16	34	35	12	1.88

Tables:   1

The End!