Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009499.1 Hibiscus syriacus cultivar Beakdansim tig00114999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54648

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1125--1153
2
14.5
2
100
0
58
48
0
0
51
1.00
5429--5474
16
2.7
17
80
9
58
34
0
2
63
1.07
5630--5702
29
2.5
30
80
10
80
52
2
2
42
1.30
9613--9650
20
1.9
20
89
10
60
39
0
2
57
1.12
9804--9852
19
2.6
19
81
9
55
46
2
6
44
1.39
9811--9862
20
2.6
21
72
9
54
51
1
5
40
1.37
12879--12914
19
1.9
18
88
5
54
41
0
5
52
1.24
20525--20558
13
2.6
13
85
0
50
17
50
11
20
1.77
20562--20596
15
2.2
16
90
10
54
14
34
28
22
1.93
23072--23140
12
5.8
12
75
8
61
17
14
18
49
1.80
23073--23144
24
3.0
24
87
2
110
19
12
18
50
1.78
23035--23142
48
2.3
49
82
7
125
21
13
16
48
1.81
27774--27846
24
3.0
23
82
7
83
20
12
17
49
1.79
28717--28768
15
3.4
15
74
12
52
50
1
3
44
1.31
28696--28768
31
2.6
29
82
10
89
52
1
4
42
1.29
29177--29227
2
25.5
2
91
0
84
50
3
0
45
1.20
32433--32474
18
2.3
19
80
16
52
45
2
2
50
1.27
35888--35958
26
2.8
25
79
10
72
54
1
2
40
1.23
36387--36426
18
2.2
18
86
8
55
42
2
2
52
1.28
46355--46408
10
5.5
10
76
12
58
25
27
24
22
2.00
47255--47297
2
22.0
2
95
4
79
51
0
0
48
1.00
47724--47778
18
2.9
18
72
5
56
43
1
3
50
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47788--47834
24
2.0
24
82
0
58
48
6
2
42
1.40
49755--49800
16
2.7
18
76
6
51
60
2
2
34
1.21
53160--53194
2
17.5
2
100
0
70
51
0
0
48
1.00
54408--54459
26
2.0
25
82
14
61
40
3
3
51
1.38

Tables:   1

The End!