genome.fa.s9503.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009503.1 Hibiscus syriacus cultivar Beakdansim tig00115064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47616

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10519--10607	33	2.8	32	82	1	115	20	37	28	14	1.92
10654--10786	32	4.2	32	93	1	205	18	36	30	14	1.90
10870--10967	31	3.1	31	66	13	92	13	39	37	9	1.76
10833--10967	63	2.1	63	98	0	261	13	39	37	10	1.79
10718--10944	95	2.4	94	71	10	244	15	37	34	12	1.85
10750--11039	158	1.8	158	89	4	460	15	35	36	12	1.85
11002--11135	32	4.2	32	89	0	187	17	35	30	15	1.92
10896--11284	95	4.1	95	72	9	369	16	33	36	12	1.87
10593--11253	349	1.9	348	95	0	1196	17	34	34	13	1.88
19489--19576	33	2.7	31	81	6	113	20	36	28	14	1.92
19623--19754	32	4.2	32	93	2	205	18	36	31	14	1.90
19812--19909	31	3.2	31	67	16	94	14	40	33	11	1.81
19801--19930	62	2.2	60	94	4	226	13	37	38	10	1.79
19687--19909	93	2.4	92	71	11	245	16	35	35	12	1.86
19655--20065	155	2.6	155	81	5	508	17	34	34	13	1.89
19965--20082	32	3.7	31	88	3	164	20	34	28	16	1.94
19965--20098	33	4.2	32	87	3	180	18	35	30	15	1.92
19563--20212	342	1.9	342	92	4	1105	17	33	35	13	1.89
19862--20242	93	4.1	92	68	15	298	17	33	36	12	1.88
28364--28451	33	2.8	32	80	3	106	20	36	28	14	1.92
28495--28622	32	4.2	31	86	9	167	18	36	30	14	1.90
28666--28798	62	2.1	62	95	2	241	12	39	37	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28833--28965	32	4.2	32	89	1	187	18	35	30	15	1.92
28833--28965	65	2.1	63	87	2	185	18	35	30	15	1.92
28727--29108	94	4.1	92	69	15	275	17	33	36	12	1.88
37204--37290	31	2.8	32	77	7	97	20	37	26	14	1.92
37204--37447	63	3.8	61	69	22	176	20	34	29	15	1.94
37336--37466	32	4.2	32	89	5	187	18	37	29	14	1.90
37334--37466	63	2.1	63	86	5	189	18	36	30	14	1.90
37513--37642	60	2.1	62	97	2	246	13	40	34	10	1.80
37430--37713	153	1.8	155	89	4	450	15	36	35	12	1.85
37677--37810	32	4.2	32	89	0	187	17	35	30	15	1.92
37279--37924	341	1.9	339	92	3	1091	17	35	34	13	1.89
46055--46140	31	2.7	31	78	5	93	20	38	25	15	1.92
46186--46317	32	4.2	32	91	3	196	18	37	30	14	1.90
46184--46317	63	2.1	64	87	4	200	17	36	31	14	1.90
46527--46660	32	4.2	32	89	0	187	17	35	30	15	1.92
46628--46804	92	1.9	92	90	2	284	16	35	35	11	1.86
46129--46776	342	1.9	342	93	2	1070	17	35	33	13	1.89

Tables:   1

The End!