Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009505.1 Hibiscus syriacus cultivar Beakdansim tig00115109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57026
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Found at i:504 original size:31 final size:32
Alignment explanation
Indices: 466--552 Score: 104
Period size: 32 Copynumber: 2.8 Consensus size: 32
456 TGTTGAGCCC
* *
466 CGGTCACCATCGGCAATCCCAGGCGTG-GCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
* ** *
497 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
529 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
553 CATTGGAGGG
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 22 0.49
32 23 0.51
ACGTcount: A:0.21, C:0.38, G:0.26, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:681 original size:30 final size:31
Alignment explanation
Indices: 597--726 Score: 183
Period size: 32 Copynumber: 4.2 Consensus size: 31
587 GTGCGTGAGG
* *
597 CTCGGTCACCATCGGCAACCCAGGC-GGTGGC
1 CTCGGTCACCATCGGCAACCCAGACGGGT-GT
628 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGC-AACCCAGACGGGTGT
660 CTCGGTCACCATC-GCAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAACCCAGACGGGTGT
* *
690 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAA-CCCAGACGGGTGT
722 CTCGG
1 CTCGG
727 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
30 28 0.31
31 22 0.24
32 38 0.42
33 3 0.03
ACGTcount: A:0.18, C:0.38, G:0.30, T:0.15
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAACCCAGACGGGTGT
Found at i:717 original size:62 final size:63
Alignment explanation
Indices: 595--726 Score: 196
Period size: 62 Copynumber: 2.1 Consensus size: 63
585 TGGTGCGTGA
*
595 GGCTCGGTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * *
658 GTCTCGGTCACCATC-GCAACCCAGACGG-GTGTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGTG-GCCTCGGTCACCATCGGCAAACCCAGACGGGT
720 GGCTCGG
1 GGCTCGG
727 CAACCCCAGG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
61 1 0.02
62 47 0.76
63 14 0.23
ACGTcount: A:0.17, C:0.37, G:0.31, T:0.14
Consensus pattern (63 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:851 original size:31 final size:31
Alignment explanation
Indices: 810--907 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
800 CAACCCCCGA
810 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
841 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
872 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
904 CGGG
1 CGGG
908 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:872 original size:63 final size:63
Alignment explanation
Indices: 773--907 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
763 GCCGAGAGTT
*
773 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
836 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
899 GGGTGCGGG
1 GGGTGCGGG
908 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:883 original size:95 final size:92
Alignment explanation
Indices: 660--884 Score: 231
Period size: 95 Copynumber: 2.4 Consensus size: 92
650 AGACGGGTGT
* *
660 CTCGGTCACCATCGCAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTC
1 CTCGGTCACCATCGCAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTC
725 GGCAACCCCAGGCCACGGGTGCGGGAG
66 GGCAACCCCAGGCCACGGGTGCGGGAG
* * * * **** *
752 TTCCGGACA-GAGC-CGAGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGC-A-A-CCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGACGGG
*
814 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
60 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
*
847 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATC-GCAA-CCCAGACGGGTGCCTCGG
885 CAACCCCAGG
Statistics
Matches: 100, Mismatches: 22, Indels: 19
0.71 0.16 0.13
Matches are distributed among these distances:
91 1 0.01
92 4 0.04
93 6 0.06
94 2 0.02
95 79 0.79
96 6 0.06
97 1 0.01
98 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (92 bp):
CTCGGTCACCATCGCAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTC
GGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:1003 original size:189 final size:189
Alignment explanation
Indices: 784--1147 Score: 490
Period size: 189 Copynumber: 1.9 Consensus size: 189
774 GGTGCGGGGT
* * * ** *
784 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG-CAACC-CCAGGC-CA-CGGGTGCGGG
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTC-ACCACC-GGCAAACCCAG-ACGGG
845 GGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
63 GGCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGTGC-GGAG
*
910 TGCCGCACAGAACCGAGCGTT-GGTGCGTGAGG-CTC-GTCACCATCGGCAATCCCAGGCGGGTG
126 TGCCGCACAGAACCGAGAGTTGGGTGCG-G-GGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
972 G
189 G
* * * * * *
973 CCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCACCGGCAAACCCAGACGGGGGC
1038 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGAGTGCCG
66 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGAGTGCCG
*
1103 CACAGAGCCGAGAGTTGGGTGCGGGGCCTCGGTCACCATCGGCAA
131 CACAGAACCGAGAGTTGGGTGCGGGGCCTCGGTCACCATCGGCAA
1148 CACCCGACGG
Statistics
Matches: 154, Mismatches: 14, Indels: 14
0.85 0.08 0.08
Matches are distributed among these distances:
187 2 0.01
188 27 0.18
189 89 0.58
190 34 0.22
191 2 0.01
ACGTcount: A:0.17, C:0.36, G:0.34, T:0.13
Consensus pattern (189 bp):
CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCACCGGCAAACCCAGACGGGGGC
CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGAGTGCCG
CACAGAACCGAGAGTTGGGTGCGGGGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGG
Found at i:1010 original size:158 final size:156
Alignment explanation
Indices: 620--1042 Score: 516
Period size: 158 Copynumber: 2.7 Consensus size: 156
610 GGCAACCCAG
* * *
620 GCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGCAACCCAGACG
1 GCGG-GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATGGCAAGCCAGACG
*
685 GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGG
65 GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
* * *
750 AGTTCCGGACAGAGCCGAGAGTTGGGT
130 AGTGCCGCACAGAACCGAGAGTTGGGT
* * * **
777 GCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG-CAACCCCA-GGCCA-CGGG
1 GCGGGG-CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTC-A--CCATGGCAAGCCAG
* * *
839 TGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
62 -ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
*
904 CGGGAGTGCCGCACAGAACCGAGCGTT-GGT
126 CGGGAGTGCCGCACAGAACCGAGAGTTGGGT
* *
934 GCGTGAGG-CTC-GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCA
1 GCG-G-GGCCTCGGTCACCATCGGCAAACCCAGACGGGT-GCCTCGGTCACCA-TGGC-AAGCCA
* * *
997 GACGGGTGTCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
61 GACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1043 TCACCATCGG
Statistics
Matches: 226, Mismatches: 27, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
155 3 0.01
156 26 0.12
157 62 0.27
158 128 0.57
159 7 0.03
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (156 bp):
GCGGGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATGGCAAGCCAGACGG
GTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGA
GTGCCGCACAGAACCGAGAGTTGGGT
Found at i:1015 original size:32 final size:32
Alignment explanation
Indices: 945--1073 Score: 170
Period size: 32 Copynumber: 4.0 Consensus size: 32
935 CGTGAGGCTC
* * *
945 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCG
1 GTCACCATCGGCAAACCCAGACGGGT-GTCTCG
* *
978 GTCACCATTGGCAAAGCCAGACGGGTGTCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
1010 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
* * *
1042 GTCACCATCGGCAACCCCCGAC-GGTGCCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
1073 G
1 G
1074 CAACCCCAGG
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
31 9 0.10
32 55 0.64
33 22 0.26
ACGTcount: A:0.19, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
GTCACCATCGGCAAACCCAGACGGGTGTCTCG
Found at i:9373 original size:33 final size:30
Alignment explanation
Indices: 9336--9421 Score: 93
Period size: 29 Copynumber: 2.8 Consensus size: 30
9326 GCGTGAGCCC
*
9336 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT---CT
* **
9369 CGGTCACCATC-GCAAAACCATACGGGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTCT
*
9398 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
9422 CATTGTGAGG
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
29 13 0.30
30 8 0.18
32 12 0.27
33 11 0.25
ACGTcount: A:0.21, C:0.38, G:0.27, T:0.14
Consensus pattern (30 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTCT
Found at i:9582 original size:31 final size:32
Alignment explanation
Indices: 9467--9579 Score: 185
Period size: 32 Copynumber: 3.6 Consensus size: 32
9457 GTGCGTGAGG
* *
9467 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
9499 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9530 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9562 CTCGGTCACCATCGGCAA
1 CTCGGTCACCATCGGCAA
9580 CCCCCGGGGC
Statistics
Matches: 77, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
31 27 0.35
32 42 0.55
33 8 0.10
ACGTcount: A:0.20, C:0.36, G:0.28, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:9728 original size:61 final size:61
Alignment explanation
Indices: 9639--9768 Score: 235
Period size: 61 Copynumber: 2.1 Consensus size: 61
9629 AGCCGAGGTT
*
9639 GGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCAC-
1 GGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACG
9699 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACG
1 GGTGCGGGGGCCTC-GTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACG
9761 GGTGCGGG
1 GGTGCGGG
9769 AGTGCCGCAC
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
60 13 0.19
61 46 0.69
62 8 0.12
ACGTcount: A:0.14, C:0.41, G:0.35, T:0.11
Consensus pattern (61 bp):
GGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACG
Found at i:9877 original size:32 final size:32
Alignment explanation
Indices: 9803--9934 Score: 169
Period size: 32 Copynumber: 4.2 Consensus size: 32
9793 GTGCGTGAGG
* * *
9803 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
* *
9836 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9868 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
9900 CTC-GTCACCATCGGCAACCCCCGAC-GGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9930 CTCGG
1 CTCGG
9935 CAACCCCAGG
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
30 7 0.08
31 21 0.24
32 34 0.39
33 26 0.30
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:18198 original size:33 final size:32
Alignment explanation
Indices: 18161--18249 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
18151 GCGTGAGCCC
*
18161 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
18194 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
18226 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
18250 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:18337 original size:32 final size:32
Alignment explanation
Indices: 18296--18419 Score: 196
Period size: 32 Copynumber: 3.9 Consensus size: 32
18286 GTGCGTGAGG
* *
18296 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
18328 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
18360 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* *
18392 CTCGGTCACCATCGGCAACCCCCGACGG
1 CTCGGTCACCATCGGCAAACCCAGACGG
18420 CTCGGCAACC
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
32 75 0.86
33 12 0.14
ACGTcount: A:0.19, C:0.38, G:0.29, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:18548 original size:30 final size:30
Alignment explanation
Indices: 18508--18602 Score: 77
Period size: 30 Copynumber: 3.1 Consensus size: 30
18498 CAACCCCCGA
18508 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGG-GCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
18539 CGGGGCCTCGTC-ACCATC-GGCAACCCCCG
1 CGGGGCCTCGGCAACC-CCAGGCCACGGGTG
*
18568 ACGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGGCCTCGGCAACCCCAGGCCACGGGTG
18599 CGGG
1 CGGG
18603 AGTGCCGCAC
Statistics
Matches: 44, Mismatches: 16, Indels: 9
0.64 0.23 0.13
Matches are distributed among these distances:
29 9 0.20
30 22 0.50
31 13 0.30
ACGTcount: A:0.14, C:0.41, G:0.36, T:0.09
Consensus pattern (30 bp):
CGGGGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:18579 original size:155 final size:150
Alignment explanation
Indices: 18396--18672 Score: 405
Period size: 155 Copynumber: 1.8 Consensus size: 150
18386 GGGTGTCTCG
* *
18396 GTCACCATCGGCAACCCCCGACGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGA
1 GTCACCATCGGCAACCCCCGACGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGA
* * *
18461 GCCGAGAGTTGGGTGC-GGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGGCAAC
66 ACCGAGAGTT-GGTGCTGAGG--CTCGGTCACCATC-GCAACCCCAGACGGGTGGCCTCGGCAAC
18524 CCCAGGCCACGGGTGCGGGGCCTC
127 CCCAGGCCACGGGTGCGGGGCCTC
18548 GTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCAC
1 GTCACCATCGGCAACCCCCGAC-G-G-CTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCAC
* * *
18613 AGAACCGAGCGTTGGTGCTGAGGCTCGGTCACCATCGCAATCCCAGGCGGGTGGCCTCGG
63 AGAACCGAGAGTTGGTGCTGAGGCTCGGTCACCATCGCAACCCCAGACGGGTGGCCTCGG
18673 TCACCATTGG
Statistics
Matches: 112, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
152 35 0.31
153 21 0.19
154 6 0.05
155 50 0.45
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (150 bp):
GTCACCATCGGCAACCCCCGACGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGA
ACCGAGAGTTGGTGCTGAGGCTCGGTCACCATCGCAACCCCAGACGGGTGGCCTCGGCAACCCCA
GGCCACGGGTGCGGGGCCTC
Found at i:18593 original size:60 final size:63
Alignment explanation
Indices: 18471--18602 Score: 243
Period size: 60 Copynumber: 2.1 Consensus size: 63
18461 GCCGAGAGTT
18471 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
18534 GGGTGCGGGG-CCTC-GTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
18594 GGGTGCGGG
1 GGGTGCGGG
18603 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
60 33 0.48
61 22 0.32
62 4 0.06
63 10 0.14
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:18733 original size:31 final size:32
Alignment explanation
Indices: 18636--18767 Score: 169
Period size: 32 Copynumber: 4.2 Consensus size: 32
18626 GGTGCTGAGG
* *
18636 CTCGGTCACCATC-GCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
18668 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
18700 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
18731 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
18763 CTCGG
1 CTCGG
18768 CAACCCCAGG
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
31 29 0.33
32 46 0.52
33 13 0.15
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:18748 original size:63 final size:64
Alignment explanation
Indices: 18636--18767 Score: 169
Period size: 63 Copynumber: 2.1 Consensus size: 64
18626 GGTGCTGAGG
* * * * *
18636 CTCGGTCACCATCGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
* * *
18700 CTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATC-GCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
18763 CTCGG
1 CTCGG
18768 CAACCCCAGG
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
63 33 0.56
64 16 0.27
65 10 0.17
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (64 bp):
CTCGGTCACCATCGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:18833 original size:95 final size:94
Alignment explanation
Indices: 18534--18916 Score: 327
Period size: 95 Copynumber: 4.1 Consensus size: 94
18524 CCCAGGCCAC
18534 GGGTGCGGGGCCTC-GTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGG
1 GGGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
18597 TGCGGGAGTGCCGCACAGAACCGAGCG-T
66 TGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** * *
18625 TGGTGCTGAGG-CTCGGTCACCATC-GCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAAA
1 GGGTGC-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCAC
*** * * * * * *
18687 GCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 GGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
18721 CAG-ACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
* *
18785 TGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 TGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
18814 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGC-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
18879 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
65 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
18909 GGGTGCGG
1 GGGTGCGG
18917 CAGCCTCGCA
Statistics
Matches: 218, Mismatches: 55, Indels: 35
0.71 0.18 0.11
Matches are distributed among these distances:
91 17 0.08
92 19 0.09
93 23 0.11
94 21 0.10
95 120 0.55
96 18 0.08
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (94 bp):
GGGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
TGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:18859 original size:343 final size:341
Alignment explanation
Indices: 18235--18885 Score: 1128
Period size: 343 Copynumber: 1.9 Consensus size: 341
18225 TCGGTCACCA
**
18235 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
18300 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
18365 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGCTCGGCAACC
131 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGCTCGGCAACC
* * *
18430 CCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCACCAT
196 CCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACCAT
*
18495 CGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGTCACCATCGGC
261 CGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGTCACCATCGGC
18560 AACCCCCGACGGTGCC
326 AACCCCCGACGGTGCC
*
18576 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGC-TGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
18640 GTCACCATC-GCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
18704 GTCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGAC--G-G-CTCGG
18768 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
191 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
18833 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
256 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
18886 AGTGCCGCAC
Statistics
Matches: 293, Mismatches: 12, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
339 35 0.12
340 88 0.30
341 53 0.18
342 1 0.00
343 116 0.40
ACGTcount: A:0.18, C:0.35, G:0.34, T:0.13
Consensus pattern (341 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGCTCGGCAACC
CCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACCAT
CGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGTCACCATCGGC
AACCCCCGACGGTGCC
Found at i:27067 original size:33 final size:31
Alignment explanation
Indices: 27030--27117 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
27020 GCGTGAGCCC
*
27030 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGC-GGT-GCCT
* ** *
27063 CGGTCACCATCGGCAAAACCATACGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGTGCCT
*
27094 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
27118 CATTGGTGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
31 23 0.50
32 3 0.07
33 20 0.43
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (31 bp):
CGGTCACCATCGGCAAACCCAGGCGGTGCCT
Found at i:27106 original size:64 final size:63
Alignment explanation
Indices: 27030--27277 Score: 177
Period size: 64 Copynumber: 3.8 Consensus size: 63
27020 GCGTGAGCCC
27030 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAAACCATACGGTGTCT
1 CGGTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAAACCATACGGTGTCT
*** ** * * *
27094 CGGTCACCATCGGCAACCCCAGGCCATTGG--T-GAGGGA--GTGCCGCACAGAACCGAGCGT-T
1 CGGTCACCATCGGCAA-CCCAGGCGGGTGGCCTCG-GTCACCAT-CGGCA-A-AACC-A---TAC
27153 GGTGCGTGAGGCT
57 GGT--GT----CT
* *
27166 CGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCT
1 CGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAAACCATAC-GGTGTCT
* *
27230 CGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 CGGTCACCATCGGC-AACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
27278 CCCCCGACGG
Statistics
Matches: 141, Mismatches: 21, Indels: 44
0.68 0.10 0.21
Matches are distributed among these distances:
60 1 0.01
61 5 0.04
62 4 0.03
63 4 0.03
64 62 0.44
65 12 0.09
66 3 0.02
67 1 0.01
68 4 0.03
70 3 0.02
71 11 0.08
72 21 0.15
73 4 0.03
74 5 0.04
75 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.15
Consensus pattern (63 bp):
CGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAAACCATACGGTGTCT
Found at i:27205 original size:32 final size:32
Alignment explanation
Indices: 27164--27295 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
27154 GTGCGTGAGG
* *
27164 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
27196 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
27228 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
27260 CTCGGTCACCATCGGCAACCCCCGAC-GGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
27291 CTCGG
1 CTCGG
27296 CAACCCCAGG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 9 0.10
32 73 0.78
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:27418 original size:30 final size:30
Alignment explanation
Indices: 27378--27473 Score: 79
Period size: 31 Copynumber: 3.1 Consensus size: 30
27368 CAACCCCCGA
27378 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGG-GCCTCGGCAACCCCAGGCCACGGGTG
* * ****
27409 CGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGGCCTCGG-CAACC-CCAGGCCACGGGTG
*
27439 ACGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGGCCTCGGCAACCCCAGGCCACGGGTG
27470 CGGG
1 CGGG
27474 AGTGCCGCAC
Statistics
Matches: 46, Mismatches: 14, Indels: 11
0.65 0.20 0.15
Matches are distributed among these distances:
30 21 0.46
31 25 0.54
ACGTcount: A:0.14, C:0.41, G:0.36, T:0.09
Consensus pattern (30 bp):
CGGGGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:27449 original size:93 final size:91
Alignment explanation
Indices: 27228--27450 Score: 209
Period size: 93 Copynumber: 2.4 Consensus size: 91
27218 AGACGGGTGT
* *
27228 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGGCT
1 CTCGGTCACCATCGGCAAACCCAGAC-GGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
27293 CGGCAACCCCAGGCCACGGTGCGGGAG
65 CGGCAACCCCAGGCCACGGTGCGGGAG
* * * * * ***** * *
27320 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGT
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGTG-CCTCGGTCACCATCGGCAACCCCCGAC-GGT
27383 GCCTCGGCAACCCCAGGCCACGGGTGCGGG-G
61 GCCTCGGCAACCCCAGGCCAC-GGTGCGGGAG
* *
27414 CCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGTGCCTCGG
27451 CAACCCCAGG
Statistics
Matches: 96, Mismatches: 26, Indels: 17
0.69 0.19 0.12
Matches are distributed among these distances:
91 1 0.01
92 9 0.09
93 38 0.40
94 33 0.34
95 14 0.15
96 1 0.01
ACGTcount: A:0.16, C:0.38, G:0.34, T:0.13
Consensus pattern (91 bp):
CTCGGTCACCATCGGCAAACCCAGACGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTC
GGCAACCCCAGGCCACGGTGCGGGAG
Found at i:27453 original size:155 final size:156
Alignment explanation
Indices: 27260--27545 Score: 445
Period size: 155 Copynumber: 1.8 Consensus size: 156
27250 AGACGGGTGT
* *
27260 CTCGGTCACCATCGGCAACCCCCGACGGTGGCTCGGCAACCCCAGGCCAC-GGTGCGGGAGTTCC
1 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
27324 GGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCC
66 GCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGCC
27386 TCGGCAACCCCAGGCCACGGGTGCGGGGC
128 TCGGCAACCCCAGGCCACGGGTGCGGGGC
27415 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
1 CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
27480 GCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCG
66 GCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
27545 G
131 G
27546 TCACCATTGG
Statistics
Matches: 119, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
155 82 0.69
156 35 0.29
157 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (156 bp):
CTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
GCAACCCCAGGCCACGGGTGCGGGGC
Found at i:27469 original size:61 final size:63
Alignment explanation
Indices: 27341--27473 Score: 252
Period size: 61 Copynumber: 2.1 Consensus size: 63
27331 GCCGAGAGTT
27341 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
27404 GGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
27465 GGGTGCGGG
1 GGGTGCGGG
27474 AGTGCCGCAC
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
61 33 0.47
62 27 0.39
63 10 0.14
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:27606 original size:31 final size:32
Alignment explanation
Indices: 27508--27640 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
27498 GTGCGTGAGG
* *
27508 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
27541 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
27573 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
27604 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
27636 CTCGG
1 CTCGG
27641 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 29 0.33
32 34 0.38
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:27632 original size:63 final size:65
Alignment explanation
Indices: 27508--27640 Score: 180
Period size: 63 Copynumber: 2.1 Consensus size: 65
27498 GTGCGTGAGG
* * * * *
27508 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
* * *
27573 CTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
27636 CTCGG
1 CTCGG
27641 CAACCCCAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 33 0.55
64 3 0.05
65 24 0.40
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (65 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:27715 original size:95 final size:94
Alignment explanation
Indices: 27404--27775 Score: 323
Period size: 95 Copynumber: 4.0 Consensus size: 94
27394 CCCAGGCCAC
27404 GGGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGG
1 GGGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
27468 TGCGGGAGTGCCGCACAGAACCGAGCGTT
66 TGCGGGAGTGCCGCACAGAACCGAGAGTT
* * * *** *
27497 -GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-G-GGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * ***
27559 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
62 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGTT
** * * *
27594 CAG-ACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
27658 TGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 TGCGGGAGTGCCGCACAGAACCGAGAGTT
* * **
27687 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGC-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
27752 GT--GGGAGTGCCGCACAGAACCGAG
65 GTGCGGGAGTGCCGCACAGAACCGAG
27776 CGCTGGTGCG
Statistics
Matches: 211, Mismatches: 50, Indels: 36
0.71 0.17 0.12
Matches are distributed among these distances:
92 10 0.05
93 51 0.24
94 14 0.07
95 89 0.42
96 36 0.17
97 6 0.03
98 5 0.02
ACGTcount: A:0.18, C:0.34, G:0.35, T:0.13
Consensus pattern (94 bp):
GGGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
TGCGGGAGTGCCGCACAGAACCGAGAGTT
Found at i:35975 original size:33 final size:32
Alignment explanation
Indices: 35938--36026 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
35928 GCGTGAGCCC
*
35938 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
35971 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
36003 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
36027 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:36110 original size:31 final size:31
Alignment explanation
Indices: 36072--36200 Score: 197
Period size: 31 Copynumber: 4.2 Consensus size: 31
36062 GTGCGTGAGG
* *
36072 CTCGGTCACCATCGGC-AACCCAGGCGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGT-GT
36103 CTCGGTCACCATCGGCAAACCCAGACGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGTGT
36134 CTCGGTCACCATCGGCAAACCCAGACGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGTGT
* * *
36165 CTCGGTCACCATCGGCAACCCCCGACGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGTGT
36196 CTCGG
1 CTCGG
36201 CAACCCCAGG
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
31 81 0.88
32 11 0.12
ACGTcount: A:0.19, C:0.38, G:0.29, T:0.15
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAAACCCAGACGGTGT
Found at i:36324 original size:30 final size:31
Alignment explanation
Indices: 36284--36380 Score: 92
Period size: 30 Copynumber: 3.1 Consensus size: 31
36274 CAACCCCCGA
36284 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * ****
36315 CGGG-GCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
36345 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
36377 CGGG
1 CGGG
36381 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
30 16 0.33
31 16 0.33
32 16 0.33
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:36325 original size:156 final size:157
Alignment explanation
Indices: 36165--36452 Score: 449
Period size: 156 Copynumber: 1.8 Consensus size: 157
36155 CAGACGGTGT
* *
36165 CTCGGTCACCATCGGCAACCCCCGAC-GGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
36229 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
66 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
36291 CTCGGCAACCCCAGGCCACGGGTGCGGGGC
128 CTCGGCAACCCCAGGCCACGGGTGCGGGGC
36321 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
36386 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
36451 GG
131 GG
36453 TCACCATTGG
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
156 59 0.49
157 59 0.49
158 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (157 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
GGCAACCCCAGGCCACGGGTGCGGGGC
Found at i:36345 original size:62 final size:63
Alignment explanation
Indices: 36247--36380 Score: 261
Period size: 62 Copynumber: 2.1 Consensus size: 63
36237 GCCGAGAGTT
36247 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
36310 GGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
36372 GGGTGCGGG
1 GGGTGCGGG
36381 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
62 61 0.86
63 10 0.14
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:36356 original size:94 final size:93
Alignment explanation
Indices: 36134--36357 Score: 224
Period size: 94 Copynumber: 2.4 Consensus size: 93
36124 CAGACGGTGT
* *
36134 CTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGGCT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
36198 CGGCAACCCCAGGCCACGGGTGCGGGAG
66 CGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
36226 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGAC-GG
36288 TGCCTCGGCAACCCCAGGCCACGGGTGCGGG-G
61 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
36320 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
36358 CAACCCCAGG
Statistics
Matches: 98, Mismatches: 24, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
91 1 0.01
92 6 0.06
93 7 0.07
94 44 0.45
95 39 0.40
96 1 0.01
ACGTcount: A:0.16, C:0.38, G:0.34, T:0.12
Consensus pattern (93 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCT
CGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:36427 original size:94 final size:92
Alignment explanation
Indices: 36311--36691 Score: 356
Period size: 94 Copynumber: 4.1 Consensus size: 92
36301 CCAGGCCACG
36311 GGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GGTGCGGGG-CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
36376 GCGGGAGTGCCGCACAGAACCGAGCGTT
65 GCGGGAGTGCCGCACAGAACCGAGCGTT
* * * *** * *
36404 GGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAAAG
1 GGTGCG-G-GGCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCACG
*** * ** ** * ***
36468 CCAGACGGGTGT-CTCGGTCACCATCG-GCAAA
62 GGTG-CGGGAGTGC-CGCACAGAACCGAGCGTT
**** *
36499 CCCACGGGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 GGTGCGGGGCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* *
36564 CGGGAGTGCCGCACAGAGCCGAGAGTT
66 CGGGAGTGCCGCACAGAACCGAGCGTT
* * **
36591 GGGTGCGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGG
1 -GGTGCGGGG-CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
36656 TGC-GGAGTGCCGCACAGAACCGAGCGCTG
64 TGCGGGAGTGCCGCACAGAACCGAGCG-TT
36685 GGTGCGG
1 GGTGCGG
36692 CAGCCTCGCA
Statistics
Matches: 217, Mismatches: 59, Indels: 24
0.72 0.20 0.08
Matches are distributed among these distances:
91 13 0.06
92 18 0.08
93 66 0.30
94 83 0.38
95 23 0.11
96 14 0.06
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (92 bp):
GGTGCGGGGCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
CGGGAGTGCCGCACAGAACCGAGCGTT
Found at i:36457 original size:33 final size:32
Alignment explanation
Indices: 36415--36544 Score: 160
Period size: 32 Copynumber: 4.2 Consensus size: 32
36405 GTGCGTGAGG
* *
36415 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
36448 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
36480 CTCGGTCACCATCGGCAAACCC--ACGGGT--
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
36508 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
36540 CTCGG
1 CTCGG
36545 CAACCCCAGG
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
28 21 0.25
30 12 0.14
32 26 0.31
33 26 0.31
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:36535 original size:60 final size:62
Alignment explanation
Indices: 36415--36544 Score: 165
Period size: 60 Copynumber: 2.1 Consensus size: 62
36405 GTGCGTGAGG
* * * *
36415 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCA-GCGGGT-G-CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
36480 CTCGGTCACCATCGGCAAACCCA-CGGGT-CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGCGGGTGCTCGGTCACCATCGGCAAACCCAGACGGGTGC
36540 CTCGG
1 CTCGG
36545 CAACCCCAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
60 32 0.54
63 5 0.08
65 22 0.37
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (62 bp):
CTCGGTCACCATCGGCAAACCCAGCGGGTGCTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:36607 original size:343 final size:341
Alignment explanation
Indices: 36012--36647 Score: 1116
Period size: 343 Copynumber: 1.9 Consensus size: 341
36002 TCGGTCACCA
**
36012 TCGGCAACCCCAGGCCATTGGTGAGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGG
1 TCGGCAACCCCAGGCCACGGGTGAGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGG
36077 TCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGTCA
66 TCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGTCA
*
36142 CCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGGCTCGGCAACCC
131 CCATCGGCAAACCCA-ACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCC
* *
36207 CAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCACCATC
195 CAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCACCATC
*
36272 GGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGGTCACCATCGGC
260 GGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGGTCACCATCGGC
36337 AACCCCCGACGGGTGCC
325 AACCCCCGACGGGTGCC
*
36354 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTG-AGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
36419 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
65 GTCACCATCGGCAA-CCCAGGC-GGTGGCCTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCG
36484 GTCACCATCGGCAAACCC-ACGG-GTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
127 GTCACCATCGGCAAACCCAACGGTGTCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCA
36547 ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGG-CCTCGGTCAC
191 ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCAC
36611 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAG
256 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAG
36648 TCCATTGGTG
Statistics
Matches: 280, Mismatches: 9, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
342 21 0.08
343 128 0.46
344 74 0.26
345 30 0.11
346 27 0.10
ACGTcount: A:0.18, C:0.35, G:0.34, T:0.13
Consensus pattern (341 bp):
TCGGCAACCCCAGGCCACGGGTGAGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGG
TCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGTCA
CCATCGGCAAACCCAACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCC
AGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCACCATCG
GCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGGTCACCATCGGCA
ACCCCCGACGGGTGCC
Found at i:44860 original size:32 final size:32
Alignment explanation
Indices: 44819--44906 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 32
44809 GCGTGAGCCC
*
44819 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
44852 C-GTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
44883 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
44907 CATTGGTGAG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
31 4 0.09
32 40 0.89
33 1 0.02
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:45023 original size:31 final size:32
Alignment explanation
Indices: 44953--45083 Score: 187
Period size: 31 Copynumber: 4.2 Consensus size: 32
44943 GTGCGTGAGG
* *
44953 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
44985 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
45016 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
45047 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
45079 CTCGG
1 CTCGG
45084 CAACCCCAGG
Statistics
Matches: 92, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
31 56 0.61
32 28 0.30
33 8 0.09
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:45083 original size:63 final size:63
Alignment explanation
Indices: 44951--45083 Score: 189
Period size: 63 Copynumber: 2.1 Consensus size: 63
44941 TGGTGCGTGA
*
44951 GGCTCGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGT
* * * *
45014 GTCTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGAC-GGT
45077 GGCTCGG
1 GGCTCGG
45084 CAACCCCAGG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
62 25 0.40
63 29 0.47
64 8 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (63 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGT
Found at i:45236 original size:31 final size:31
Alignment explanation
Indices: 45137--45237 Score: 84
Period size: 31 Copynumber: 3.3 Consensus size: 31
45127 GTTGGGTGCG
45137 GGGT-CCTCGTCACCATC-GCAACCCCCGAC
1 GGGTGCCTCGTCACCATCGGCAACCCCCGAC
* * * ****
45166 GGGTGCCTCGGCAACC-CCAGGCCACGGGTG-C
1 GGGTGCCTCGTC-ACCATC-GGCAACCCCCGAC
*
45197 GGGGGCCTCGTCACCATCGGCAACCCCCGAC
1 GGGTGCCTCGTCACCATCGGCAACCCCCGAC
45228 GGGTGCCTCG
1 GGGTGCCTCG
45238 GCAACCCCAG
Statistics
Matches: 50, Mismatches: 16, Indels: 10
0.66 0.21 0.13
Matches are distributed among these distances:
29 4 0.08
30 16 0.32
31 25 0.50
32 5 0.10
ACGTcount: A:0.14, C:0.43, G:0.32, T:0.12
Consensus pattern (31 bp):
GGGTGCCTCGTCACCATCGGCAACCCCCGAC
Found at i:45239 original size:62 final size:61
Alignment explanation
Indices: 45130--45261 Score: 246
Period size: 62 Copynumber: 2.1 Consensus size: 61
45120 GCCGAGAGTT
*
45130 GGGTGCGGGGTCCTCGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
45191 GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
45253 GGGTGCGGG
1 GGGTGCGGG
45262 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 23 0.33
62 46 0.67
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (61 bp):
GGGTGCGGGGGCCTCGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:45337 original size:32 final size:32
Alignment explanation
Indices: 45296--45428 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
45286 GTGCGTGAGG
* * *
45296 CTCGGTCACCATCGGCAATCCCAGGC-GGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
* *
45328 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
45360 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
45392 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
45424 CTCGG
1 CTCGG
45429 CAACCCCAGG
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 87 0.97
33 3 0.03
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:45576 original size:94 final size:95
Alignment explanation
Indices: 45191--45576 Score: 326
Period size: 94 Copynumber: 4.1 Consensus size: 95
45181 CCCAGGCCAC
*
45191 GGGTGCGGGGGCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
45255 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * *** *
45284 TGGTGCGTGAGG-CTCGGTCACCATCGGCAA-TCCC-AGGCGGTGGCCTCGGTC-ACCATTGGCA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACACCCGACG-GGT-GCCTCGG-CAACCCCAGGCC
* *** * * * * * *
45345 AAGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
62 ACGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * * *
45381 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
45445 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* **
45475 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
45539 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
45569 GGGTGCGG
1 GGGTGCGG
45577 CAGCCTCGCA
Statistics
Matches: 221, Mismatches: 53, Indels: 37
0.71 0.17 0.12
Matches are distributed among these distances:
92 2 0.01
93 19 0.09
94 98 0.44
95 48 0.22
96 41 0.19
97 11 0.05
98 2 0.01
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:53752 original size:33 final size:32
Alignment explanation
Indices: 53715--53802 Score: 106
Period size: 33 Copynumber: 2.8 Consensus size: 32
53705 GCGTGAGCCC
*
53715 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
53748 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
53780 CGGTCACCATC-GCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
53803 CATTGGTGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
31 8 0.17
32 14 0.30
33 24 0.52
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:53916 original size:30 final size:31
Alignment explanation
Indices: 53849--53970 Score: 176
Period size: 32 Copynumber: 3.9 Consensus size: 31
53839 GTGCGTGAGG
* *
53849 CTCGGTCACCATCGGC-AACCCAGGCGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGG-GGT
53880 CTCGGTCACCATCGGCAAACCCAGAC-GGGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGGT
53910 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGG-GT
* *
53942 CTCGGTCACCATCGGCAACCCCCGACGGG
1 CTCGGTCACCATCGGCAAACCCAGACGGG
53971 TGGCTCGGCA
Statistics
Matches: 84, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
30 28 0.33
31 19 0.23
32 37 0.44
ACGTcount: A:0.20, C:0.39, G:0.29, T:0.13
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGGT
Found at i:53952 original size:62 final size:61
Alignment explanation
Indices: 53849--53971 Score: 185
Period size: 62 Copynumber: 2.0 Consensus size: 61
53839 GTGCGTGAGG
*
53849 CTCGGTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 CTCGGTCACCATCGGCAACCCAGACGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * *
53910 CTCGGTCACCATCGGCAAACCCAGACGG-GTGTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 CTCGGTCACCATCGGC-AACCCAGACGGTG-GCCTCGGTCACCATCGGCAAACCCAGACGGGT
53972 GGCTCGGCAA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
61 17 0.30
62 39 0.70
ACGTcount: A:0.20, C:0.38, G:0.28, T:0.14
Consensus pattern (61 bp):
CTCGGTCACCATCGGCAACCCAGACGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:54101 original size:31 final size:31
Alignment explanation
Indices: 54061--54158 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
54051 CAACCCCCGA
54061 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
54092 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
54123 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
54155 CGGG
1 CGGG
54159 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:54123 original size:63 final size:62
Alignment explanation
Indices: 54025--54158 Score: 250
Period size: 63 Copynumber: 2.1 Consensus size: 62
54015 GCCGAGAGTT
*
54025 GGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
54087 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
54150 GGGTGCGGG
1 GGGTGCGGG
54159 AGTGCCGCAC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 14 0.20
63 56 0.80
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.10
Consensus pattern (62 bp):
GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:54134 original size:94 final size:93
Alignment explanation
Indices: 53910--54134 Score: 231
Period size: 94 Copynumber: 2.4 Consensus size: 93
53900 CCAGACGGGT
* *
53910 CTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTC-GTCACCATCGGCAACCCCCGACGGGTGCC
53975 TCGGCAACCCCAGGCCACGGGTGCGGGAG
65 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
54004 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGTCACCATCGGCAACCCCCGACGGGT
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGTCACCATCGGCAACCCCCGACGGGT
*
54066 GCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
62 GCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
54098 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCG
54135 GCAACCCCAG
Statistics
Matches: 98, Mismatches: 25, Indels: 16
0.71 0.18 0.12
Matches are distributed among these distances:
93 1 0.01
94 77 0.79
95 19 0.19
96 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.34, T:0.12
Consensus pattern (93 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCT
CGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:54186 original size:94 final size:93
Alignment explanation
Indices: 54088--54472 Score: 339
Period size: 94 Copynumber: 4.1 Consensus size: 93
54078 CCAGGCCACG
54088 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGG
54153 TGCGGGAGTGCCGCACAGAACCGAGCGTT
65 TGCGGGAGTGCCGCACAGAACCGAGCGTT
* * * * *** * *
54182 GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGTGGCCTCGGTC-ACCATTGGCAAAG
1 GGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGT-GCCTCGG-CAACCCCAGGCCACG
*** * ** ** * ***
54245 CCAGACGGGTGT-CTCGGTCACCATCG-GCAAAC
63 GGTG-CGGGAGTGC-CGCACAGAACCGAGC-GTT
*** * *
54277 CCAGACGGGTGTCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGTG-CGGGGGCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGG
* *
54341 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
64 GTGCGGGAGTGCCGCACAGAACCGAGCGTT
* * **
54371 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGTCCATTGG
1 -GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGG
*
54436 TGCGGGAGTGCCGCACAGAACCGAGCGCTG
65 TGCGGGAGTGCCGCACAGAACCGAGCG-TT
54466 GGTGCGG
1 GGTGCGG
54473 CAGCCTCGCA
Statistics
Matches: 216, Mismatches: 60, Indels: 30
0.71 0.20 0.10
Matches are distributed among these distances:
93 3 0.01
94 125 0.58
95 80 0.37
96 8 0.04
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (93 bp):
GGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGT
GCGGGAGTGCCGCACAGAACCGAGCGTT
Found at i:54228 original size:157 final size:156
Alignment explanation
Indices: 53942--54229 Score: 438
Period size: 157 Copynumber: 1.8 Consensus size: 156
53932 AGACGGGTGT
* *
53942 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
54007 CGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCG
66 CGCACAGAACCGAGAGTTGGGTGCGGGG-CCTCGTCACCATCGGCAACCCCAGACGGGTGCCTCG
54072 GCAACCCCAGGCCACGGGTGCGGGGGC
130 GCAACCCCAGGCCACGGGTGCGGGGGC
54099 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
54164 CGCACAGAACCGAGCGTT-GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGC-GGTGGCC
66 CGCACAGAACCGAGAGTTGGGTGCG-G-GGCCTC-GTCACCATCGGCAACCCCAGACGGGT-GCC
54226 TCGG
127 TCGG
54230 TCACCATTGG
Statistics
Matches: 119, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
156 12 0.10
157 105 0.88
158 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (156 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGGTGCGGGGCCTCGTCACCATCGGCAACCCCAGACGGGTGCCTCGG
CAACCCCAGGCCACGGGTGCGGGGGC
Found at i:54235 original size:189 final size:189
Alignment explanation
Indices: 54036--54400 Score: 499
Period size: 189 Copynumber: 1.9 Consensus size: 189
54026 GGTGCGGGGT
* * * ** *
54036 CCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGG-CAACC-CCAGGC-CA-CGGGTGCGGGG
1 CCTCGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTC-ACCACC-GGCAAACCCAG-ACGGGG
54097 GCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGT
63 GCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGT
*
54162 GCCGCACAGAACCGAGCGTT-GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGTGG
127 GCCGCACAGAACCGAGAGTTGGGTGCG-GAGGCCTCGGTCACCATCGGCAATCCCAGGCGGTGG
* * * * * *
54224 CCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CCTC-GTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCACCGGCAAACCCAGACGGGGGC
54289 CTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
65 CTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* *
54354 GCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACCATCGGCAA
130 GCACAGAACCGAGAGTTGGGTGCGGAGGCCTCGGTCACCATCGGCAA
54401 CACCCGACGG
Statistics
Matches: 155, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
188 4 0.03
189 114 0.74
190 35 0.23
191 2 0.01
ACGTcount: A:0.17, C:0.36, G:0.34, T:0.13
Consensus pattern (189 bp):
CCTCGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCACCGGCAAACCCAGACGGGGGCC
TCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCG
CACAGAACCGAGAGTTGGGTGCGGAGGCCTCGGTCACCATCGGCAATCCCAGGCGGTGG
Found at i:54299 original size:31 final size:32
Alignment explanation
Indices: 54193--54324 Score: 169
Period size: 32 Copynumber: 4.2 Consensus size: 32
54183 GTGCGTGAGG
* *
54193 CTCGGTCACCATCGGCAATCCCAGGC-GGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
54225 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
54257 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
54289 CTC-GTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
54320 CTCGG
1 CTCGG
54325 CAACCCCAGG
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
31 28 0.32
32 57 0.65
33 3 0.03
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Done.