genome.fa.s9507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009507.1 Hibiscus syriacus cultivar Beakdansim tig00115246_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57655

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7075--7159	33	2.6	33	88	1	118	20	34	29	16	1.94
7243--7327	33	2.6	33	90	1	127	20	35	29	15	1.93
7412--7602	33	5.6	33	77	11	197	17	35	31	15	1.91
6939--7518	169	3.4	170	95	1	1033	17	33	32	16	1.92
7412--7602	65	2.8	66	74	13	197	17	35	31	15	1.91
7404--7624	106	2.1	106	97	0	415	16	34	33	15	1.91
7994--8025	11	2.9	11	95	0	55	9	40	37	12	1.75
16090--16174	33	2.6	33	88	1	118	20	34	29	16	1.94
15953--16534	169	3.4	170	96	0	1051	17	33	33	16	1.92
16259--16343	33	2.6	33	90	1	127	20	35	29	15	1.93
16428--16618	33	5.6	33	77	11	197	17	35	31	15	1.91
16428--16618	65	2.8	66	74	13	197	17	35	31	15	1.91
16420--16640	106	2.1	106	97	0	415	16	34	33	15	1.91
17010--17041	11	2.9	11	95	0	55	9	40	37	12	1.75
30859--30943	33	2.6	33	88	1	118	20	34	29	16	1.94
31028--31113	32	2.7	31	85	7	111	17	38	30	13	1.89
30722--31300	168	3.4	169	95	1	1031	16	33	33	16	1.91
31194--31384	33	5.6	33	79	11	206	17	36	31	15	1.91
31194--31384	65	2.8	66	76	13	206	17	36	31	15	1.91
31186--31403	106	2.1	106	98	0	418	16	35	33	15	1.90
31774--31805	11	2.9	11	95	0	55	9	40	37	12	1.75
39863--39947	33	2.6	33	88	1	118	20	34	29	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40032--40117	31	2.7	31	84	7	102	18	37	29	15	1.91
39727--40303	168	3.4	168	94	2	1000	16	33	32	16	1.92
40198--40282	33	2.6	33	92	1	136	18	36	29	15	1.92
40331--40407	33	2.4	33	88	2	111	19	36	29	14	1.91
40798--40829	11	2.9	11	100	0	64	9	43	37	9	1.69
48871--48955	33	2.6	32	84	1	107	21	34	28	16	1.95
48736--49312	168	3.4	170	93	2	988	17	34	32	16	1.92
49039--49122	33	2.6	31	84	3	96	19	35	30	14	1.91
49207--49424	32	6.6	32	75	16	178	16	36	30	16	1.91
49164--49443	134	2.1	137	94	4	505	15	35	32	17	1.91
49813--49844	11	2.9	11	100	0	64	9	43	37	9	1.69

Tables:   1

The End!