genome.fa.s9508.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009508.1 Hibiscus syriacus cultivar Beakdansim tig00115251_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63299

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4353--4429	30	2.6	29	83	8	91	22	35	27	15	1.94
4484--4616	32	4.2	32	93	1	205	18	36	30	14	1.90
4666--4770	31	3.4	32	66	16	94	13	41	33	11	1.80
4671--4793	62	2.0	63	98	1	239	14	42	33	9	1.79
4580--4862	154	1.8	155	90	0	460	15	36	35	12	1.85
4827--4959	32	4.2	32	90	0	194	18	36	30	15	1.92
13208--13292	31	2.7	31	75	8	84	21	38	24	15	1.92
13338--13467	30	4.2	32	89	5	178	18	37	29	14	1.90
13514--13642	59	2.1	62	91	8	221	13	41	34	10	1.80
13677--13809	32	4.2	32	88	1	178	18	36	30	15	1.92
26642--26730	33	2.8	32	82	1	115	20	37	28	14	1.92
26777--26909	32	4.2	32	93	1	205	18	36	30	14	1.90
26993--27090	31	3.1	31	66	13	92	13	39	37	9	1.76
26956--27090	63	2.1	63	98	0	261	13	39	37	10	1.79
26841--27067	95	2.4	94	71	10	244	15	37	34	12	1.85
26873--27162	158	1.8	158	89	4	460	15	35	36	12	1.85
27125--27258	32	4.2	32	89	0	187	17	35	30	15	1.92
27019--27407	95	4.1	95	72	9	369	16	33	36	12	1.87
26716--27376	349	1.9	348	95	0	1196	17	34	34	13	1.88
41066--41154	33	2.8	32	82	1	115	20	37	28	14	1.92
41201--41333	32	4.2	32	93	1	205	18	36	30	14	1.90
41417--41514	31	3.1	31	66	13	92	13	39	37	9	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41380--41514	63	2.1	63	98	0	261	13	39	37	10	1.79
41265--41491	95	2.4	94	71	10	244	15	37	34	12	1.85
41297--41586	158	1.8	158	89	4	460	15	35	36	12	1.85
41549--41682	32	4.2	32	89	0	187	17	35	30	15	1.92
41443--41831	95	4.1	95	72	9	369	16	33	36	12	1.87
41140--41800	349	1.9	348	95	0	1196	17	34	34	13	1.88
50033--50121	33	2.8	32	82	1	115	20	37	28	14	1.92
50168--50300	32	4.2	32	93	1	205	18	36	30	14	1.90
50384--50481	31	3.1	31	66	13	92	13	39	37	9	1.76
50347--50481	63	2.1	63	98	0	261	13	39	37	10	1.79
50232--50458	95	2.4	94	71	10	244	15	37	34	12	1.85
50264--50553	158	1.8	158	89	4	460	15	35	36	12	1.85
50516--50649	32	4.2	32	89	0	187	17	35	30	15	1.92
50410--50798	95	4.1	95	72	9	369	16	33	36	12	1.87
50107--50767	349	1.9	348	95	0	1196	17	34	34	13	1.88
58976--59062	33	2.8	30	80	5	102	20	37	27	13	1.91
59107--59238	32	4.2	31	88	8	187	18	37	31	13	1.89
59108--59231	62	2.0	62	90	3	196	19	37	29	13	1.90
59321--59418	31	3.1	31	66	13	92	13	39	37	9	1.76
59285--59418	63	2.1	63	97	1	252	13	38	37	10	1.79
59170--59395	94	2.4	94	70	11	235	15	36	34	12	1.86
59296--59656	189	1.9	186	84	8	482	16	36	34	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59453--59584	31	4.2	32	86	4	169	17	36	30	15	1.91
59453--59584	64	2.1	63	85	4	176	17	36	30	15	1.91
59137--59552	157	2.7	155	81	7	511	17	35	34	13	1.88

Tables:   1

The End!