Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000951.1 Hibiscus syriacus cultivar Beakdansim tig00001903_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91409

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4529--4600
28
2.6
27
80
6
81
44
8
11
36
1.70
13571--13604
17
2.0
17
88
0
50
52
0
0
47
1.00
13759--13873
29
4.0
29
86
2
160
14
31
30
23
1.95
13911--13995
29
2.9
29
87
3
127
14
32
29
23
1.94
14000--14064
33
2.0
33
84
0
85
13
36
23
26
1.92
14014--14092
33
2.4
33
84
0
95
11
34
26
27
1.91
14146--14203
29
2.0
29
93
0
98
24
27
34
13
1.93
25304--25365
31
2.0
31
100
0
124
29
32
16
22
1.95
28899--28995
25
3.9
24
78
9
79
48
2
0
49
1.12
28953--29101
29
5.3
29
71
22
106
46
1
0
51
1.14
28965--29119
29
5.1
29
74
12
100
47
1
0
50
1.14
29005--29087
14
5.4
16
68
17
52
46
1
1
50
1.16
29061--29119
17
3.7
16
70
22
52
52
0
0
47
1.00
29060--29107
22
2.4
20
81
18
64
50
0
0
50
1.00
29293--29412
42
2.9
42
87
2
161
49
18
13
19
1.80
29792--29897
28
3.8
28
75
9
99
41
8
9
40
1.68
35370--35415
2
23.0
2
100
0
92
50
0
0
50
1.00
42677--42713
7
5.4
7
87
6
58
27
29
27
16
1.97
42676--42713
20
1.9
20
100
0
76
28
28
26
15
1.96
42703--42749
22
2.2
21
88
3
67
12
23
44
19
1.85
42751--42800
9
5.3
9
83
4
55
24
30
28
18
1.97
42757--42801
10
4.7
10
81
8
58
24
31
24
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42751--42801
19
2.7
19
85
8
68
23
29
27
19
1.98
49893--49929
7
5.4
7
87
6
58
27
29
27
16
1.97
49892--49929
13
2.8
14
84
8
60
28
28
26
15
1.96
51526--51555
15
2.0
15
93
0
51
43
13
20
23
1.86
51770--51849
42
1.9
42
86
0
115
21
5
38
35
1.75
61124--61172
26
2.0
25
84
8
64
40
18
6
34
1.75
67966--68021
18
3.2
18
85
10
89
42
21
5
30
1.75
67962--68015
16
3.2
16
85
10
81
42
16
5
35
1.72
74943--74992
18
2.8
18
93
0
82
24
2
4
70
1.15
74942--75001
18
2.9
21
78
19
72
25
1
5
68
1.19
74942--75037
22
4.5
22
79
6
101
28
2
6
63
1.30
75472--75519
14
3.6
13
83
11
62
35
4
2
58
1.29
75465--75606
26
5.4
26
73
15
103
33
2
4
60
1.28
80712--80755
23
2.0
22
90
4
70
70
4
11
13
1.31
83858--83896
2
19.5
2
100
0
78
48
0
0
51
1.00
84218--84244
3
9.0
3
100
0
54
0
33
0
66
0.92
84328--84358
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1

The End!