genome.fa.s9510.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009510.1 Hibiscus syriacus cultivar Beakdansim tig00115348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21384

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651--1781	31	4.2	32	85	5	169	16	30	34	19	1.93
1681--2096	156	2.7	155	77	8	452	13	35	33	17	1.89
1504--1885	92	4.1	93	69	21	287	13	36	32	17	1.89
1815--1948	63	2.1	63	94	1	234	10	38	38	12	1.78
1558--1941	188	2.1	186	81	8	451	12	35	34	16	1.87
1994--2114	33	3.8	33	84	8	130	13	33	33	19	1.90
1548--2182	343	1.9	334	90	5	981	12	35	33	18	1.88
2168--2255	33	2.8	31	80	3	104	13	28	37	20	1.91
10472--10605	32	4.2	32	88	1	187	15	30	35	17	1.92
10664--10766	31	3.4	31	68	16	97	11	34	39	13	1.81
10640--10773	62	2.1	63	97	1	252	10	37	38	14	1.80
10568--10853	156	1.8	157	88	6	438	12	37	34	16	1.86
10826--10946	33	4.0	29	81	16	131	14	32	34	19	1.91
10820--10947	63	2.1	60	85	10	170	14	32	35	17	1.90
10994--11080	31	2.7	31	83	3	120	14	28	36	19	1.92
19147--19325	96	1.9	96	91	0	295	11	37	34	16	1.85
19297--19428	32	4.2	32	86	3	169	15	31	35	17	1.92
19463--19592	62	2.2	59	92	4	215	10	38	36	14	1.80
19488--19585	31	3.2	31	66	17	87	11	34	39	14	1.81
19391--19674	153	1.8	156	87	7	427	11	37	34	16	1.85
19639--19769	32	4.2	32	87	9	191	13	32	35	18	1.90
19646--19767	61	2.0	61	90	3	192	13	29	36	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19814--19901	33	2.7	31	81	6	113	14	28	36	20	1.92

Tables:   1

The End!