genome.fa.s9515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009515.1 Hibiscus syriacus cultivar Beakdansim tig00115725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54365

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5489--5576	32	2.8	32	80	3	106	20	37	27	14	1.92
5623--5755	32	4.2	32	93	1	205	18	36	30	14	1.90
5687--5909	93	2.4	92	70	11	227	16	37	33	12	1.86
5801--5932	62	2.1	63	93	5	234	13	40	35	10	1.79
5719--6004	155	1.8	156	88	5	436	15	36	35	12	1.85
5967--6099	32	4.2	32	88	1	178	18	36	30	15	1.92
6064--6232	91	1.9	90	92	1	284	17	36	33	11	1.87
14352--14439	32	2.8	32	80	3	106	20	37	27	14	1.92
14486--14616	31	4.2	32	91	3	187	18	37	29	14	1.90
14484--14616	63	2.1	63	86	5	189	18	36	30	14	1.90
14663--14796	62	2.1	63	95	2	252	13	39	36	10	1.79
14674--15033	186	1.9	185	86	6	505	17	36	33	12	1.87
14515--14928	157	2.7	157	80	7	511	17	35	33	13	1.89
14831--14959	31	4.2	31	87	3	170	18	37	28	15	1.92
23249--23337	33	2.8	32	82	1	115	20	37	28	14	1.92
23387--23502	30	3.8	31	88	6	166	20	38	28	12	1.88
23387--23503	61	1.9	60	87	5	173	20	38	28	12	1.89
23557--23686	59	2.1	63	92	7	232	13	40	34	10	1.80
23724--23852	32	4.0	32	87	2	170	18	35	30	15	1.92
23620--23999	93	4.1	93	70	12	312	17	34	34	13	1.88
37732--37820	33	2.8	32	82	1	115	20	37	28	14	1.92
37867--37999	32	4.2	32	93	1	205	18	36	30	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38046--38179	62	2.1	63	95	2	252	13	39	36	10	1.79
37963--38251	157	1.8	157	89	4	458	15	35	36	12	1.85
38109--38494	94	4.1	93	72	18	355	17	34	35	12	1.88
38214--38347	32	4.2	32	89	0	187	17	35	30	15	1.92
37806--38464	348	1.9	347	95	0	1194	17	34	34	13	1.88
52135--52224	33	2.8	32	79	5	108	21	36	27	14	1.92
52271--52385	31	3.7	31	90	4	178	20	37	27	14	1.92
52447--52580	63	2.1	63	97	1	252	13	39	36	10	1.79
52302--52715	157	2.6	157	78	11	420	17	35	33	13	1.89
52644--52835	33	5.6	33	75	16	167	17	36	30	15	1.90
52636--52854	107	2.1	106	93	6	372	15	36	32	15	1.90
53223--53254	11	2.9	11	95	0	55	9	40	37	12	1.75

Tables:   1

The End!