genome.fa.s9516.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009516.1 Hibiscus syriacus cultivar Beakdansim tig00115730_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60089

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911--995	33	2.6	33	88	1	118	20	34	29	16	1.94
1080--1166	31	2.7	32	91	3	131	18	37	28	14	1.91
776--1353	169	3.4	169	95	1	1018	16	33	33	16	1.92
1248--1437	33	5.6	32	79	11	200	17	35	31	15	1.91
1240--1459	105	2.1	106	96	0	406	16	34	33	15	1.91
1072--1508	137	3.2	137	76	12	527	16	33	33	16	1.91
1274--1583	105	3.0	104	83	9	324	16	34	35	14	1.89
1828--1859	11	2.9	11	95	0	55	9	40	37	12	1.75
14555--14639	33	2.6	33	88	1	118	20	34	29	16	1.94
14419--14998	169	3.4	170	94	1	1024	17	33	32	16	1.92
14724--14807	32	2.6	32	88	3	116	20	35	28	15	1.93
14892--15082	33	5.6	33	77	11	197	17	35	31	15	1.91
14892--15082	65	2.8	66	74	13	197	17	35	31	15	1.91
14884--15104	106	2.1	106	97	0	415	16	34	33	15	1.91
15474--15505	11	2.9	11	95	0	55	9	40	37	12	1.75
29033--29117	33	2.6	33	88	1	118	20	34	29	16	1.94
28896--29474	169	3.4	170	95	1	1024	17	33	32	16	1.92
29202--29286	33	2.6	33	90	1	127	20	35	29	15	1.93
29371--29558	33	5.6	33	74	14	170	17	35	30	15	1.92
29371--29447	29	2.5	30	85	8	93	18	37	27	16	1.92
29363--29580	106	2.1	104	94	2	384	16	34	33	16	1.91
29947--29978	11	2.9	11	95	0	55	9	40	37	12	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37997--38082	31	2.7	32	79	13	97	19	37	26	16	1.93
37861--38430	166	3.4	169	93	3	944	17	34	31	16	1.92
38163--38246	32	2.6	32	86	5	116	20	35	28	15	1.93
38163--38249	31	2.7	32	84	10	115	19	37	27	14	1.91
38328--38516	33	5.6	33	78	10	195	17	35	30	15	1.91
38320--38535	105	2.1	104	96	1	396	16	35	32	16	1.91
38906--38937	11	2.9	11	95	0	55	9	40	37	12	1.75
46967--47050	32	2.6	32	86	3	107	20	34	28	16	1.94
47135--47219	33	2.6	33	90	1	127	20	35	29	15	1.93
46832--47410	169	3.4	170	95	1	1024	17	33	32	16	1.92
47304--47492	33	5.6	33	77	12	188	16	35	31	15	1.91
47296--47513	106	2.1	103	94	2	382	16	34	33	16	1.91
47881--47912	11	2.9	11	95	0	55	9	40	37	12	1.75
55932--56015	33	2.6	33	86	3	109	20	34	28	16	1.94
55796--56374	168	3.4	170	95	1	1024	17	33	32	16	1.92
56100--56184	33	2.6	33	90	1	127	20	35	29	15	1.93
56269--56458	33	5.6	33	76	12	188	17	35	31	15	1.91
56261--56480	105	2.1	106	96	0	406	16	34	33	15	1.91
56092--56549	137	3.4	137	76	13	535	16	34	33	15	1.91
56846--56877	11	2.9	11	95	0	55	9	40	37	12	1.75

Tables:   1

The End!