genome.fa.s9518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009518.1 Hibiscus syriacus cultivar Beakdansim tig00115774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52139

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327--1296	148	6.8	140	83	8	981	23	21	35	20	1.96
327--1296	432	2.3	418	85	5	1250	23	21	35	20	1.96
959--1148	46	4.2	45	69	18	124	23	21	34	20	1.96
11902--11934	11	3.0	11	90	0	57	15	36	39	9	1.79
12321--12511	33	5.6	33	77	11	197	15	31	35	17	1.91
12299--12519	106	2.1	106	97	0	415	15	33	34	16	1.91
12405--12985	169	3.4	170	95	0	1042	16	33	33	17	1.92
12596--12680	33	2.6	33	90	1	127	15	29	35	20	1.93
12768--12849	33	2.5	33	88	2	112	17	30	34	18	1.94
20833--20865	11	3.0	11	90	0	57	15	36	39	9	1.79
21249--21432	32	5.6	32	74	16	153	15	29	37	16	1.90
21228--21440	105	2.1	99	90	6	329	15	31	36	15	1.90
21356--21432	29	2.6	29	85	8	93	15	27	38	18	1.91
21517--21594	33	2.4	32	85	6	88	16	26	37	19	1.93
21331--21890	166	3.4	168	90	5	887	16	31	34	17	1.93
21682--21761	32	2.5	33	84	8	103	17	28	35	18	1.94
29698--29730	11	3.0	11	90	0	57	15	36	39	9	1.79
30128--30308	32	5.4	31	74	13	146	16	30	36	17	1.91
30097--30316	104	2.1	106	92	5	363	15	31	35	16	1.91
30048--30479	136	3.2	131	75	13	421	15	32	34	16	1.91
30389--30477	33	2.8	32	85	6	119	15	29	35	19	1.93
30560--30641	33	2.5	33	88	2	112	17	30	34	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30203--30772	170	3.4	170	93	3	985	16	32	33	17	1.92
43188--43220	11	3.0	11	90	0	57	15	36	39	9	1.79
43606--43789	33	5.6	33	73	12	164	15	32	36	16	1.90
43588--43797	99	2.1	101	92	5	352	15	33	35	15	1.89
43690--44251	167	3.4	168	90	6	881	16	32	34	17	1.92
44039--44119	33	2.5	32	84	4	101	17	29	34	18	1.94

Tables:   1

The End!