genome.fa.s952.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000952.1 Hibiscus syriacus cultivar Beakdansim tig00001906_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64793

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1394--1497	38	2.9	36	87	7	140	24	23	13	39	1.90
1513--1598	36	2.4	36	86	0	109	23	20	13	41	1.88
1427--1867	101	4.3	102	89	2	627	29	21	12	36	1.90
1613--1699	37	2.4	37	84	5	106	26	21	12	39	1.89
1714--1867	36	4.4	36	68	11	104	29	23	11	35	1.90
1742--1879	67	2.1	67	91	0	222	31	22	11	34	1.90
1742--1900	67	2.4	67	88	2	221	33	22	10	33	1.88
2727--3698	105	9.3	105	90	3	1423	33	26	18	21	1.96
2727--3698	209	4.6	210	90	3	1414	33	26	18	21	1.96
2727--3698	314	3.1	313	90	3	1453	33	26	18	21	1.96
4685--4724	18	2.3	18	83	8	57	25	5	2	67	1.23
4722--4775	2	27.5	2	96	3	101	48	0	0	51	1.00
5239--5266	2	14.0	2	100	0	56	50	0	0	50	1.00
5311--5344	14	2.2	16	90	10	54	17	5	0	76	0.98
6034--6077	21	2.1	21	100	0	88	31	34	4	29	1.78
8237--8305	23	3.0	23	86	0	93	27	26	26	20	1.99
14908--14947	20	2.0	20	85	0	53	32	35	17	15	1.91
24041--24286	29	8.5	28	70	16	157	36	6	1	55	1.34
24138--24235	24	3.8	24	76	19	90	36	6	1	56	1.31
24126--24248	28	4.3	29	78	11	128	39	6	0	53	1.32
24122--24301	56	3.1	57	78	16	192	36	6	1	55	1.33
24130--24247	57	2.1	57	89	6	179	37	6	0	55	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24297--24443	59	2.5	56	80	15	140	55	2	7	34	1.39
24363--24474	29	3.7	30	80	13	106	57	1	7	33	1.37
30988--31047	21	2.9	21	76	11	61	46	8	11	33	1.70
39179--39221	21	2.0	21	90	0	68	46	2	13	37	1.57
39899--39968	2	35.0	2	94	5	124	50	1	0	48	1.09
40097--40494	201	2.0	197	95	1	706	42	11	9	36	1.73
40695--40799	53	2.0	52	94	1	183	32	7	12	47	1.69
40985--41047	21	3.0	21	81	2	83	22	26	6	44	1.76
44502--44541	21	1.9	21	89	0	62	57	12	0	30	1.36
49005--49035	11	2.7	12	90	10	55	83	0	0	16	0.64
49396--49454	29	2.0	29	100	0	118	32	3	6	57	1.41
50898--50937	18	2.2	18	86	0	53	50	2	7	40	1.44
61902--61936	2	17.5	2	100	0	70	51	0	0	48	1.00

Tables:   1

The End!