Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009520.1 Hibiscus syriacus cultivar Beakdansim tig00115782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63376
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Found at i:2466 original size:32 final size:33
Alignment explanation
Indices: 2390--2474 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
2380 GTGTGCGTGC
* * *
2390 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
2423 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
2455 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
2475 CCCCGACCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:2537 original size:169 final size:170
Alignment explanation
Indices: 2253--2834 Score: 1042
Period size: 169 Copynumber: 3.4 Consensus size: 170
2243 ACGTGTGCGT
**
2253 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
2318 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
2383 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
2423 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GACCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
2487 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
2552 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
2592 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
2657 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
2721 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
2761 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
2826 GTGCGGGAG
66 GTGCGGGAG
2835 CCTCGGTCAC
Statistics
Matches: 396, Mismatches: 15, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
169 281 0.71
170 115 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:2635 original size:32 final size:33
Alignment explanation
Indices: 2559--2643 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
2549 GTGTGCGTGA
* *
2559 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
2592 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
2624 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
2644 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:2770 original size:33 final size:33
Alignment explanation
Indices: 2728--2918 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
2718 TTGTGCGTGA
*
2728 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
2761 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
2793 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
2833 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
2867 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
2899 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
2919 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:2802 original size:65 final size:66
Alignment explanation
Indices: 2728--2918 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
2718 TTGTGCGTGA
*
2728 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
2793 -
66 G
* * * * * **
2793 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
2858 AGGCGGGTG
58 AGACGGGTG
* *
2867 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
2919 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:2845 original size:106 final size:106
Alignment explanation
Indices: 2720--2940 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
2710 CAGGCCGCTT
*
2720 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
2785 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
2826 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
2891 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
2932 GTGCGGGAG
1 GTGCGGGAG
2941 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:3324 original size:11 final size:11
Alignment explanation
Indices: 3310--3341 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
3300 TCCCGGTGGT
3310 GCTCCGGCGAC
1 GCTCCGGCGAC
*
3321 GCTCCGGCGAT
1 GCTCCGGCGAC
3332 GCTCCGGCGA
1 GCTCCGGCGA
3342 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:15990 original size:32 final size:33
Alignment explanation
Indices: 15914--15998 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
15904 GTGTGCGTGC
* * *
15914 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
15947 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
15979 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
15999 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:16060 original size:169 final size:170
Alignment explanation
Indices: 15777--16358 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
15767 ACGTGTGCGT
**
15777 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
15842 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
15907 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
15947 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
16011 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
16076 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
16116 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
16181 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
16245 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
16285 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
16350 GTGCGGGAG
66 GTGCGGGAG
16359 CCTCGGTCAC
Statistics
Matches: 398, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
169 282 0.71
170 116 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:16159 original size:32 final size:33
Alignment explanation
Indices: 16083--16167 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
16073 GTGTGCGTGA
* *
16083 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
16116 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
16148 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
16168 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:16294 original size:33 final size:33
Alignment explanation
Indices: 16252--16442 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
16242 TTGTGCGTGA
*
16252 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
16285 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
16317 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
16357 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
16391 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
16423 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
16443 CCCTGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:16326 original size:65 final size:66
Alignment explanation
Indices: 16252--16442 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
16242 TTGTGCGTGA
*
16252 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
16317 -
66 G
* * * * * **
16317 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
16382 AGGCGGGTG
58 AGACGGGTG
* *
16391 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
16443 CCCTGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:16369 original size:106 final size:106
Alignment explanation
Indices: 16244--16464 Score: 406
Period size: 106 Copynumber: 2.1 Consensus size: 106
16234 CAGGCCGCTT
*
16244 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
16309 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
16350 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
16415 AGACGGGTGTCTCGGTCACCATCGGCAACCCTGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
16456 GTGCGGGAG
1 GTGCGGGAG
16465 TGCCGCACAG
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 111 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:16848 original size:11 final size:11
Alignment explanation
Indices: 16834--16865 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
16824 TCCCGGTGGT
16834 GCTCCGGCGAC
1 GCTCCGGCGAC
*
16845 GCTCCGGCGAT
1 GCTCCGGCGAC
16856 GCTCCGGCGA
1 GCTCCGGCGA
16866 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:29675 original size:32 final size:33
Alignment explanation
Indices: 29599--29683 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
29589 GTGTGCGTGC
* * *
29599 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
29632 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
29664 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
29684 CCCCGACCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:29746 original size:169 final size:170
Alignment explanation
Indices: 29462--30043 Score: 1042
Period size: 169 Copynumber: 3.4 Consensus size: 170
29452 ACGTGTGCGT
**
29462 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
29527 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
29592 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
29632 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GACCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
29696 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
29761 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
29801 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
29866 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
29930 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
29970 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
30035 GTGCGGGAG
66 GTGCGGGAG
30044 CCTCGGTCAC
Statistics
Matches: 396, Mismatches: 15, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
169 281 0.71
170 115 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:29844 original size:32 final size:33
Alignment explanation
Indices: 29768--29852 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
29758 GTGTGCGTGA
* *
29768 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
29801 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
29833 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
29853 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:29979 original size:33 final size:33
Alignment explanation
Indices: 29937--30127 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
29927 TTGTGCGTGA
*
29937 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
29970 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
30002 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
30042 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
30076 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
30108 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
30128 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:30011 original size:65 final size:66
Alignment explanation
Indices: 29937--30127 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
29927 TTGTGCGTGA
*
29937 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
30002 -
66 G
* * * * * **
30002 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
30067 AGGCGGGTG
58 AGACGGGTG
* *
30076 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
30128 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:30054 original size:106 final size:106
Alignment explanation
Indices: 29929--30149 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
29919 CAGGCCGCTT
*
29929 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
29994 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
30035 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
30100 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
30141 GTGCGGGAG
1 GTGCGGGAG
30150 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:30533 original size:11 final size:11
Alignment explanation
Indices: 30519--30550 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
30509 TCCCGGTGGT
30519 GCTCCGGCGAC
1 GCTCCGGCGAC
*
30530 GCTCCGGCGAT
1 GCTCCGGCGAC
30541 GCTCCGGCGA
1 GCTCCGGCGA
30551 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:38692 original size:32 final size:33
Alignment explanation
Indices: 38616--38700 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
38606 GTGTGCGTGC
* * *
38616 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
38649 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
38681 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
38701 CCCCGACCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:38763 original size:169 final size:170
Alignment explanation
Indices: 38479--39060 Score: 1042
Period size: 169 Copynumber: 3.4 Consensus size: 170
38469 ACGTGTGCGT
**
38479 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
38544 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
38609 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
38649 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GACCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
38713 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
38778 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
38818 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* * *
38883 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG-CCGCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
38947 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
38987 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
39052 GTGCGGGAG
66 GTGCGGGAG
39061 CCTCGGTCAC
Statistics
Matches: 396, Mismatches: 15, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
169 281 0.71
170 115 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:38861 original size:32 final size:33
Alignment explanation
Indices: 38785--38869 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
38775 GTGTGCGTGA
* *
38785 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
38818 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
38850 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
38870 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:38996 original size:33 final size:33
Alignment explanation
Indices: 38954--39144 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
38944 TTGTGCGTGA
*
38954 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
38987 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* * * * *
39019 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG
**
39059 AGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
39093 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
39125 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
39145 CCCCGGGCCA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 41 0.31
33 60 0.46
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 22 0.17
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:39028 original size:65 final size:66
Alignment explanation
Indices: 38954--39144 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 66
38944 TTGTGCGTGA
*
38954 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
39019 -
66 G
* * * * * **
39019 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGAGCCTCGGTCACCATCGGCAGTCCC
1 GCCTCGGTCACCATCGGCAAACCCAGG-C----G-G-GTG-GCCTCGGTCACCATCGGCAAACCC
*
39084 AGGCGGGTG
58 AGACGGGTG
* *
39093 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAA
39145 CCCCGGGCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
65 41 0.41
66 1 0.01
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 1 0.01
72 2 0.02
73 30 0.30
74 22 0.22
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.16
Consensus pattern (66 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
G
Found at i:39071 original size:106 final size:106
Alignment explanation
Indices: 38946--39166 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
38936 CAGGCCGCTT
*
38946 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
39011 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
39052 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
39117 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
39158 GTGCGGGAG
1 GTGCGGGAG
39167 TGCCGCACAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:39550 original size:11 final size:11
Alignment explanation
Indices: 39536--39567 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
39526 TCCCGGTGGT
39536 GCTCCGGCGAC
1 GCTCCGGCGAC
*
39547 GCTCCGGCGAT
1 GCTCCGGCGAC
39558 GCTCCGGCGA
1 GCTCCGGCGA
39568 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:53453 original size:32 final size:33
Alignment explanation
Indices: 53377--53461 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
53367 GTGTGCGTGC
* * *
53377 GCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
53410 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
53442 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
53462 CCCCGGCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 19 0.40
33 28 0.60
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:53523 original size:169 final size:170
Alignment explanation
Indices: 53240--53820 Score: 1051
Period size: 169 Copynumber: 3.4 Consensus size: 170
53230 ACGTGTGCGT
**
53240 GCCTCGGTCACCATCGGCAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
53305 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
* *
53370 TGCGTGCGCCTCGGTCACCATCGGTAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
53410 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
53474 GTGCGGGAGTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
53539 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
53579 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
53644 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGGTCACCATCAGG--CCCTTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
*
53707 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
131 TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
*
53747 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
53812 GTGCGGGAG
66 GTGCGGGAG
53821 CCTCGGTCAC
Statistics
Matches: 398, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
168 117 0.29
169 165 0.41
170 116 0.29
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (170 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
TGCGTGAGCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
Found at i:53622 original size:32 final size:33
Alignment explanation
Indices: 53546--53630 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
53536 GTGTGCGTGA
* *
53546 GCCTCGGTCACCATCGGCAATCCAAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
53579 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
*
53611 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
53631 CCCCGGGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 19 0.40
33 29 0.60
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCAAGACGGGTG
Found at i:53790 original size:32 final size:32
Alignment explanation
Indices: 53714--53902 Score: 175
Period size: 32 Copynumber: 5.6 Consensus size: 32
53704 TTGTGCGTGA
* *
53714 GCCTCGGTCACCATCGGCAATCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
53746 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * * *
53779 GTCTCGGTCACCATCGGTAACCCCGGGCCATTGGTGCGGGA
1 GCCTCGGTCACCATCGGCAA--AC---CCA---G-ACGGGT
**
53820 GCCTCGGTCACCATCGGCAGTCCCAG--GGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
53850 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGACGGGT
*
53883 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
53903 CCCCGGGCCA
Statistics
Matches: 129, Mismatches: 15, Indels: 25
0.76 0.09 0.15
Matches are distributed among these distances:
30 3 0.02
31 24 0.19
32 37 0.29
33 35 0.27
34 1 0.01
36 3 0.02
37 3 0.02
39 1 0.01
40 1 0.01
41 21 0.16
ACGTcount: A:0.17, C:0.35, G:0.31, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:53855 original size:31 final size:31
Alignment explanation
Indices: 53820--53902 Score: 114
Period size: 31 Copynumber: 2.6 Consensus size: 31
53810 TGGTGCGGGA
**
53820 GCCTCGGTCACCATCGGCAGTCCCAG-GGGT
1 GCCTCGGTCACCATCGGCAAACCCAGAGGGT
53850 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGA-GGGT
*
53883 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
53903 CCCCGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
31 24 0.51
32 19 0.40
33 4 0.09
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (31 bp):
GCCTCGGTCACCATCGGCAAACCCAGAGGGT
Found at i:53883 original size:104 final size:106
Alignment explanation
Indices: 53706--53924 Score: 397
Period size: 104 Copynumber: 2.1 Consensus size: 106
53696 TCAGGCCCTT
*
53706 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
*
53771 AGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
53812 GTGCGGGAGCCTCGGTCACCATCGGCAGTCCCA-G-GGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
53875 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
53916 GTGCGGGAG
1 GTGCGGGAG
53925 TGCCGCACAG
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
104 78 0.71
105 1 0.01
106 31 0.28
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (106 bp):
GTGCGGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:53959 original size:104 final size:104
Alignment explanation
Indices: 53747--54053 Score: 311
Period size: 104 Copynumber: 3.1 Consensus size: 104
53737 CAGGCGGGTG
*
53747 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGTAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* ** ** * *** *
53812 GTGCGGGAG-CCTCGGTCACCATC-GGCAGTCCCAG-GGGTG
66 GTGCGGGAGTAC-CGCACAGAACCGGGC-GTCGGTGCGGG-A
53851 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
53916 GTGCGGGAGTGCCGCACAGAACCGGGCGTTGGTGCGGGA
66 GTGCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
* * *
53955 GCCTCGGTCACCATCGGCAACCCCCGAC----G----GG---CC-TCGGCAACCCCAGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
54008 GTGCGGGAGTACCGCACAGAACCGAGCGCTGGGTGCGGGA
66 GTGCGGGAGTACCGCACAGAACCGGGCG-TCGGTGCGGGA
54048 GCCTCG
1 GCCTCG
54054 CACAGCGTCG
Statistics
Matches: 181, Mismatches: 18, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
92 45 0.25
93 18 0.10
96 2 0.01
100 1 0.01
104 108 0.60
105 7 0.04
ACGTcount: A:0.17, C:0.35, G:0.34, T:0.14
Consensus pattern (104 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTACCGCACAGAACCGGGCGTCGGTGCGGGA
Found at i:54303 original size:11 final size:11
Alignment explanation
Indices: 54289--54320 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
54279 TCCCGGTGGT
54289 GCTCCGGCGAC
1 GCTCCGGCGAC
*
54300 GCTCCGGCGAT
1 GCTCCGGCGAC
54311 GCTCCGGCGA
1 GCTCCGGCGA
54321 GACATTATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.38, T:0.12
Consensus pattern (11 bp):
GCTCCGGCGAC
Found at i:62432 original size:33 final size:32
Alignment explanation
Indices: 62369--62448 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
62359 CCGTGTGTGC
** * *
62369 GCCTCGGTCA-CATCGGTAATCCAAGGCGGGT
1 GCCTCGGTCACCATCGACAAACCAAGACGGGT
*
62400 GGCCTCGGTCACCATCGACAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGACAAACCAAGACGGGT
*
62433 GTCTCGGTCACCATCG
1 GCCTCGGTCACCATCG
62449 GCAACCCCGG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
32 25 0.61
33 16 0.39
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.17
Consensus pattern (32 bp):
GCCTCGGTCACCATCGACAAACCAAGACGGGT
Found at i:62570 original size:163 final size:167
Alignment explanation
Indices: 62234--62797 Score: 886
Period size: 163 Copynumber: 3.4 Consensus size: 167
62224 CCGTGTGCGT
**
62234 GCCTCGGTCACCATCGGCAAAAAACAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT
1 GCCTCGGTCACCATCGGC-AAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATT
62299 GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGTCACCATCAGGCCCCCGTG
65 GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGTCACCATCAGGCCCCCGTG
* *
62364 TG-TGCGCCTCGGTCA-CATCGGTAATCCAAGGCGGGTG
130 TGCTGAGCCTCGGTCACCATCGGCAATCC-AGGCGGGTG
*
62401 GCCTCGGTCACCATCGACAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
* *
62465 GTGC-GG-GTGCCGCACAGTACCGAGCTTTGGTGCGGGAGCCTCGGTCACCATCAGGCCCCCGTG
66 GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTC-GTCACCATCAGGCCCCCGTG
*
62528 TGCTGAGCCTCGG-CACCATCGGCAATCCGGGCGGGT-
130 TGCTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
62564 GCCTCGGTCACCATC-GCAAACCCAGACGGGTGTCCTCGGTCACCATCGGCAACCCCGGGCCATT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGT-CTCGGTCACCATCGGCAACCCCGGGCCATT
* *
62628 GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGTCTCGTCACCATCA-G--CCCTTG
65 GGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGTCACCATCAGGCCCCCGTG
62690 TGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
130 TGC-TGAGCCTCGGTCACCATCGGCAAT-CCAGGCGGGTG
62730 GCCTCGGTCACCATCGGCAAACCCAGAC-GG-GTCTCGGTCACCATCGGCAACCCC-GGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
62792 GTGCGG
66 GTGCGG
62798 AGCCTCGTCA
Statistics
Matches: 371, Mismatches: 14, Indels: 28
0.90 0.03 0.07
Matches are distributed among these distances:
162 25 0.07
163 95 0.26
164 81 0.22
165 55 0.15
166 86 0.23
167 29 0.08
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.16
Consensus pattern (167 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
GTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGGGAGCCTCGTCACCATCAGGCCCCCGTGT
GCTGAGCCTCGGTCACCATCGGCAATCCAGGCGGGTG
Found at i:62618 original size:32 final size:31
Alignment explanation
Indices: 62534--62618 Score: 111
Period size: 32 Copynumber: 2.7 Consensus size: 31
62524 CGTGTGCTGA
* * *
62534 GCCTCGG-CACCATCGGCAATCCGGGCGGGT
1 GCCTCGGTCACCATCGGCAACCCAGACGGGT
62564 GCCTCGGTCACCATC-GCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGC-AACCCAGACGGGT
62595 GTCCTCGGTCACCATCGGCAACCC
1 G-CCTCGGTCACCATCGGCAACCC
62619 CGGGCCATTG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
30 9 0.19
31 18 0.38
32 19 0.40
33 2 0.04
ACGTcount: A:0.18, C:0.40, G:0.28, T:0.14
Consensus pattern (31 bp):
GCCTCGGTCACCATCGGCAACCCAGACGGGT
Found at i:62738 original size:33 final size:33
Alignment explanation
Indices: 62697--62882 Score: 195
Period size: 33 Copynumber: 5.6 Consensus size: 33
62687 TTGTGCGTGA
*
62697 GCCTCGGTCACCATCGGCAATCCCAGGCGGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
62730 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
* *
62762 --CTCGGTCACCATCGGC-AACCCCGGCCATTGGTGCGG
1 GCCTCGGTCACCATCGGCAAACCCAGG-C---GG-G-TG
**
62798 AGCCTC-GTCACCATCGGCAGTCCCAGGCGGGTG
1 -GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
62831 GCCTCGGTCACCATCGGCAAACCCAGACGGGT-
1 GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
*
62863 GTCTCGGTCACCATCGGCAA
1 GCCTCGGTCACCATCGGCAA
62883 CCCCGGGCCA
Statistics
Matches: 128, Mismatches: 13, Indels: 25
0.77 0.08 0.15
Matches are distributed among these distances:
29 6 0.05
30 17 0.13
32 24 0.19
33 56 0.44
34 2 0.02
35 2 0.02
38 13 0.10
39 8 0.06
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (33 bp):
GCCTCGGTCACCATCGGCAAACCCAGGCGGGTG
Found at i:62810 original size:101 final size:105
Alignment explanation
Indices: 62689--62903 Score: 384
Period size: 101 Copynumber: 2.1 Consensus size: 105
62679 ATCAGCCCTT
62689 GTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
1 GTGCG-GAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCC
62754 AGAC-GG-GTCTCGGTCACCATCGGCAACCCC-GGCCATTG
65 AGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
*
62792 GTGCGGAGCCTC-GTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCA
1 GTGCGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCA
62856 GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
66 GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
62896 GTGCGGAG
1 GTGCGGAG
62904 TGCCGCACAG
Statistics
Matches: 108, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
101 54 0.50
102 9 0.08
103 29 0.27
104 16 0.15
ACGTcount: A:0.17, C:0.36, G:0.32, T:0.15
Consensus pattern (105 bp):
GTGCGGAGCCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCA
GACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
Found at i:62936 original size:101 final size:98
Alignment explanation
Indices: 62730--63032 Score: 304
Period size: 101 Copynumber: 3.1 Consensus size: 98
62720 CAGGCGGGTG
62730 GCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCGGTCACCATCGGCAACCCCGGCCATTGGTG
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCGGTCACCATCGGCAACCCCGGCCATTGGTG
* * * * *
62795 CGGAG-CCTCGTCAC-CATCGGCAGTCCCAG-GCGGGTG
66 CGGAGTAC-CG-CACAGACCGGC-GT--CGGTGCGGG-A
62831 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTG
1 GCCTCGGTCACCATCGGCAAACCCAGAC-GG-GTCTCGGTCACCATCGGCAACCCC-GGCCATTG
* *
62896 GTGCGGAGTGCCGCACAGACCGGCGTTGGTGCGGGA
63 GTGCGGAGTACCGCACAGACCGGCGTCGGTGCGGGA
* * *
62932 GCCTCGGTCACCATCGGC-AACCC---C-CGACT-GGT-GCC-TCGGCAACCCCAGGCCATTGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCGGTCACCATCGGCAACCCC-GGCCATTGGT
*
62989 GCGGGAGTACCGCACAGAACCGAGCGCTGGGTGCGGGA
65 GC-GGAGTACCGCACAG-ACCG-GCG-TCGGTGCGGGA
63027 GCCTCG
1 GCCTCG
63033 CACAGCGTCG
Statistics
Matches: 180, Mismatches: 12, Indels: 26
0.83 0.06 0.12
Matches are distributed among these distances:
91 23 0.13
92 15 0.08
93 7 0.04
94 6 0.03
95 16 0.09
97 1 0.01
100 5 0.03
101 47 0.26
102 7 0.04
103 29 0.16
104 23 0.13
105 1 0.01
ACGTcount: A:0.17, C:0.36, G:0.33, T:0.14
Consensus pattern (98 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCGGTCACCATCGGCAACCCCGGCCATTGGTG
CGGAGTACCGCACAGACCGGCGTCGGTGCGGGA
Found at i:62947 original size:134 final size:134
Alignment explanation
Indices: 62532--62950 Score: 461
Period size: 134 Copynumber: 3.1 Consensus size: 134
62522 CCCGTGTGCT
* * *
62532 GAGCCTCGGCACCATCGGCAAT-CCGGGCGGGT-GCCTCGGTCACCATC-GCAAACCCAGACGGG
1 GAGCCTCGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGG
*
62594 TGTCCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCACAGAACCGAGCGTT
66 TGT-CTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCAGGAGTGCCGCACAG-ACCG-GCGTT
62659 GGTGCGG
128 GGTGCGG
* ** * * * *
62666 GAGTCTCGTCACCAT---CAG-CCCTTGTGCGTGAGCCTCGGTCACCATCGGCAATCCCAGGCGG
1 GAGCCTCGTCACCATCGGCAGTCCCAGGCGGGTG-GCCTCGGTCACCATCGGCAAACCCAGACGG
* * * ** * **
62727 GTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTC-TCGGT-CACCA-T-CGGCA-ACCCCGGC
65 GT-GTCTCGGTCACCATCGGC-AACCC---CGGGCCATTGGTGCAGGAGTGCCGCACAGACCGG-
*
62787 CATTGGTGC-G
124 CGTTGGTGCGG
62797 GAGCCTCGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGG
1 GAGCCTCGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGG
62862 TGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGC-GGAGTGCCGCACAGACCGGCGTTGGT
66 TGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCAGGAGTGCCGCACAGACCGGCGTTGGT
62926 GCGG
131 GCGG
62930 GAGCCTCGGTCACCATCGGCA
1 GAGCCTC-GTCACCATCGGCA
62951 ACCCCCGACT
Statistics
Matches: 229, Mismatches: 35, Indels: 42
0.75 0.11 0.14
Matches are distributed among these distances:
129 5 0.02
130 5 0.02
131 26 0.11
132 28 0.12
133 46 0.20
134 93 0.41
135 15 0.07
136 2 0.01
137 4 0.02
138 5 0.02
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.16
Consensus pattern (134 bp):
GAGCCTCGTCACCATCGGCAGTCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGG
TGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCAGGAGTGCCGCACAGACCGGCGTTGGT
GCGG
Found at i:63285 original size:11 final size:11
Alignment explanation
Indices: 63271--63302 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
63261 TCCCGGTGGT
63271 GCTCCGGCGAC
1 GCTCCGGCGAC
63282 GCTCCGGCGAC
1 GCTCCGGCGAC
63293 GCTCCGGCGA
1 GCTCCGGCGA
63303 GACATTATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.44, G:0.38, T:0.09
Consensus pattern (11 bp):
GCTCCGGCGAC
Done.