Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009522.1 Hibiscus syriacus cultivar Beakdansim tig00115799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63537

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4848--4892
24
2.0
23
86
8
65
8
26
24
40
1.84
6294--6384
39
2.3
39
83
3
112
36
19
25
18
1.95
16313--16482
45
3.8
45
91
1
261
38
6
24
31
1.80
18704--18822
45
2.6
45
86
0
166
22
22
11
42
1.86
19017--19495
54
8.9
54
87
4
675
31
16
20
30
1.95
19191--19276
27
3.2
27
66
18
70
30
16
22
31
1.95
19017--19497
212
2.2
215
90
3
774
31
16
20
30
1.95
19842--19934
42
2.2
41
83
5
107
26
23
12
36
1.91
22180--22290
29
3.8
30
79
13
106
53
2
7
36
1.43
22304--22349
24
1.9
23
83
16
58
56
0
2
41
1.11
25382--25423
15
2.9
15
89
3
59
38
9
14
38
1.78
25416--25485
20
3.5
20
98
0
131
40
11
15
32
1.83
25581--25679
49
2.0
50
80
9
114
47
2
0
50
1.12
25821--25889
27
2.5
28
86
11
99
56
1
0
42
1.08
25821--25977
26
5.6
28
68
26
84
52
1
0
45
1.13
25821--25900
24
3.0
27
85
10
96
53
2
0
43
1.14
25932--25982
14
3.4
14
77
17
57
58
0
0
41
0.98
25933--25976
22
2.0
23
90
4
72
56
0
0
43
0.99
25899--25973
8
9.8
8
71
17
52
49
0
1
49
1.09
25930--25981
8
6.1
9
78
21
51
55
0
0
44
0.99
25862--25998
31
4.6
31
74
16
105
51
0
0
47
1.11
25956--26010
21
2.5
22
82
11
67
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25899--26008
54
2.1
52
83
8
134
50
0
0
48
1.07
25944--26006
30
2.0
32
81
6
76
57
0
0
42
0.99
26182--26297
42
2.8
42
91
0
187
46
17
16
19
1.84
26567--26619
16
3.1
18
75
22
60
41
0
0
58
0.98
26601--26625
12
2.1
12
100
0
50
32
0
0
68
0.90
30495--30580
27
3.2
27
96
0
154
19
1
25
53
1.52
33849--33883
2
17.5
2
100
0
70
51
0
0
48
1.00
34626--34673
20
2.4
20
89
6
71
37
16
20
25
1.93
35427--35513
46
1.9
46
88
4
133
14
19
26
39
1.91
35435--35517
23
3.7
22
77
6
87
15
18
26
39
1.90
35682--35757
36
2.1
36
97
0
143
43
14
10
31
1.79
40221--40250
15
2.0
15
100
0
60
13
46
26
13
1.80
40672--40747
36
2.1
36
97
0
143
43
14
10
31
1.79
45667--45704
3
13.0
3
88
5
60
34
2
0
63
1.09
45659--45704
20
2.3
19
88
7
65
32
4
0
63
1.14
61469--61493
13
1.9
13
100
0
50
56
0
0
44
0.99
62166--62197
16
2.0
16
100
0
64
25
12
18
43
1.85

Tables:   1

The End!