genome.fa.s9523.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009523.1 Hibiscus syriacus cultivar Beakdansim tig00115804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46072

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1521--1554	17	1.9	18	88	5	52	41	0	32	26	1.56
3087--3140	21	2.5	22	82	14	69	20	1	5	72	1.14
3087--3152	5	12.2	5	75	15	60	21	1	4	72	1.10
7125--7151	13	2.1	13	100	0	54	22	14	48	14	1.81
9286--9710	55	7.7	55	90	2	549	28	23	15	33	1.94
9679--10465	54	14.6	54	88	2	1075	24	24	16	34	1.95
9679--10465	163	4.9	161	88	2	1046	24	24	16	34	1.95
12221--12453	124	1.9	125	84	2	317	22	25	18	33	1.96
13763--13810	12	3.9	12	76	13	53	6	20	0	72	1.05
16052--16083	6	4.9	7	92	7	50	53	15	15	15	1.74
16330--16384	21	2.6	21	91	5	85	14	20	18	47	1.83
18173--18199	13	2.1	13	100	0	54	22	14	48	14	1.81
22687--22733	24	1.9	25	86	4	69	38	10	21	29	1.87
23390--23448	17	3.8	15	77	18	50	72	1	1	23	1.02
24437--24772	30	11.6	29	78	10	280	40	8	0	50	1.37
24448--24703	89	2.9	89	78	5	284	38	8	0	52	1.37
24668--24746	24	3.2	24	82	7	95	41	8	0	49	1.34
24777--24884	30	3.7	29	77	16	107	53	0	5	40	1.24
24843--24912	29	2.3	30	80	9	72	54	1	8	35	1.40
29717--29793	31	2.4	32	78	8	86	36	25	19	18	1.94
29822--29856	16	2.2	16	94	0	61	17	25	14	42	1.86
29878--29928	16	3.2	15	86	10	66	27	21	9	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30716--30762	20	2.5	19	83	12	62	29	8	10	51	1.66
31015--31051	15	2.4	15	95	4	65	40	2	5	51	1.39
31309--31335	2	13.5	2	100	0	54	51	48	0	0	1.00
31335--31360	2	13.0	2	100	0	52	50	0	0	50	1.00
31567--31645	20	4.1	20	70	15	67	29	27	1	41	1.64
31567--31637	19	3.7	19	74	12	65	29	28	0	42	1.56
31695--31895	2	102.0	2	70	17	100	43	2	3	50	1.32
31735--31895	47	3.4	47	73	19	115	44	2	3	49	1.33
31877--32043	85	2.0	85	97	0	316	32	5	5	55	1.47
32063--32756	215	3.2	215	94	0	1205	28	13	7	50	1.69
39319--39385	8	7.8	8	80	14	53	77	1	20	0	0.85
39269--39385	17	7.0	16	78	8	92	78	0	15	5	0.97
39281--39384	26	3.8	26	74	16	86	77	0	16	4	0.98
39274--39377	55	1.9	55	80	11	124	78	0	14	5	0.98
39266--39372	15	7.1	14	70	17	63	77	0	15	5	1.00
39266--39385	18	6.6	18	75	19	74	77	0	16	5	0.99
39330--39385	8	6.4	9	78	17	57	78	0	21	0	0.75
40009--40068	28	2.1	28	84	6	77	36	36	8	18	1.81
40521--40863	173	2.0	173	91	1	553	31	16	21	30	1.95
41598--41680	42	2.0	42	80	2	96	27	19	18	34	1.95
41759--41878	57	2.1	57	80	1	141	30	10	16	41	1.83
42151--42270	42	2.9	41	80	6	143	24	20	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41858--42601	263	2.8	261	86	3	1055	29	18	19	31	1.96
42995--43073	38	2.1	38	100	0	158	44	25	20	10	1.82
43000--43060	19	3.2	19	63	9	52	37	29	21	11	1.88

Tables:   1

The End!