Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009524.1 Hibiscus syriacus cultivar Beakdansim tig00115805_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72181

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3735--3811
31
2.4
32
78
8
86
36
25
19
18
1.94
3847--3890
16
2.8
16
89
0
61
22
27
18
31
1.97
3920--3957
16
2.4
16
95
4
69
26
15
10
47
1.78
4092--4131
20
2.0
21
95
5
73
57
0
0
42
0.98
4740--4786
20
2.5
19
83
12
62
29
8
10
51
1.66
5039--5075
15
2.4
15
95
4
65
40
2
5
51
1.39
4091--5075
524
1.9
520
87
5
1405
36
8
12
43
1.73
5587--5657
19
3.7
19
74
9
63
29
26
0
43
1.55
5716--5951
2
122.5
2
66
20
85
44
2
2
50
1.29
5836--5956
47
2.5
49
75
17
128
44
3
4
47
1.38
6016--6045
2
15.5
2
93
6
53
50
0
0
50
1.00
5917--6110
94
2.0
96
95
3
347
34
4
5
55
1.43
6133--6820
215
3.2
214
93
1
1161
28
13
7
50
1.68
13300--13398
8
11.9
8
72
10
74
78
2
16
3
0.96
13341--13396
17
3.1
18
82
10
69
76
1
21
0
0.87
13298--13405
14
7.9
14
74
13
66
77
1
17
2
0.97
13350--13410
18
3.3
19
82
11
74
77
0
22
0
0.78
13314--13410
16
6.1
16
71
20
60
78
2
17
2
0.95
14034--14092
27
2.1
28
84
9
77
37
35
8
18
1.81
14548--14887
171
2.0
172
91
2
560
32
16
21
30
1.95
15618--15701
42
2.0
42
83
0
105
27
19
19
34
1.95
16170--16289
42
2.9
41
80
6
143
24
20
23
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15877--16621
261
2.8
261
87
2
1046
29
18
19
32
1.96
18358--18406
21
2.3
21
82
6
55
20
4
6
69
1.27
18358--18415
5
11.2
5
78
7
53
18
5
5
70
1.25
20047--20125
39
2.0
39
100
0
158
29
12
15
43
1.83
26139--26182
5
8.4
5
80
9
52
22
2
4
70
1.17
27396--27439
22
2.0
23
90
4
72
77
4
11
6
1.11
32491--32539
21
2.3
21
86
10
64
16
4
8
71
1.26
33397--33440
21
2.1
21
82
0
52
36
15
38
9
1.80
37274--37429
39
4.0
39
80
9
131
21
27
19
31
1.97
42416--42468
18
2.9
18
97
0
97
22
28
22
26
1.99
42714--43133
205
2.0
205
95
0
759
28
17
17
36
1.93
43522--43645
39
3.2
39
86
3
160
19
27
20
32
1.97
43490--43645
78
2.0
78
81
2
179
16
26
24
32
1.96
48233--48360
43
2.9
44
77
5
134
40
14
14
30
1.86
49641--49728
5
16.8
5
76
15
81
2
21
0
76
0.90
49633--49731
17
5.8
16
75
21
69
2
22
0
75
0.90
49627--49729
28
3.6
29
86
6
129
2
20
0
76
0.91
49646--49739
11
8.5
11
76
13
79
2
22
0
75
0.91
49628--49739
16
7.1
16
74
17
92
2
21
0
75
0.92
61224--61357
69
1.9
69
95
3
243
36
21
12
29
1.90
66544--66593
24
2.1
24
88
7
75
26
2
14
58
1.47

Tables:   1

The End!