genome.fa.s9530.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009530.1 Hibiscus syriacus cultivar Beakdansim tig00116170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33556

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7514--7602	33	2.8	32	82	1	115	20	37	28	14	1.92
7649--7781	32	4.2	32	93	1	205	18	36	30	14	1.90
7865--7962	31	3.1	31	66	13	92	13	39	37	9	1.76
7828--7962	63	2.1	63	98	0	261	13	39	37	10	1.79
7713--7939	95	2.4	94	71	10	244	15	37	34	12	1.85
7745--8034	158	1.8	158	89	4	460	15	35	36	12	1.85
7997--8130	32	4.2	32	89	0	187	17	35	30	15	1.92
7891--8279	95	4.1	95	72	9	369	16	33	36	12	1.87
7588--8248	349	1.9	348	95	0	1196	17	34	34	13	1.88
22143--22227	33	2.6	33	88	1	118	20	34	29	16	1.94
22312--22394	31	2.6	32	90	1	123	20	36	28	14	1.92
22006--22583	167	3.4	170	94	2	1015	17	33	32	16	1.92
22477--22667	33	5.6	33	77	11	197	17	35	31	15	1.91
22477--22667	65	2.8	66	74	13	197	17	35	31	15	1.91
22470--22686	106	2.0	106	97	0	407	16	35	32	16	1.91
23058--23089	11	2.9	11	95	0	55	9	40	37	12	1.75
31151--31235	33	2.6	33	88	1	118	20	34	29	16	1.94
31015--31592	169	3.4	169	94	2	1011	17	33	32	16	1.92
31320--31404	33	2.6	33	90	1	127	20	35	29	15	1.93
31487--31675	64	2.8	65	74	13	193	17	35	30	15	1.91
31479--31697	105	2.1	105	95	1	395	16	34	32	15	1.91
31587--31675	32	2.8	32	84	6	117	17	35	31	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31520--31827	105	3.1	103	83	10	329	16	34	34	14	1.89
32065--32096	11	2.9	11	95	0	55	9	40	37	12	1.75

Tables:   1

The End!