Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009531.1 Hibiscus syriacus cultivar Beakdansim tig00116198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68975
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Found at i:4407 original size:11 final size:11
Alignment explanation
Indices: 4391--4423 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
4381 CGATAATGTC
4391 TCGCCGGAGCA
1 TCGCCGGAGCA
*
4402 TCGCCGGAGCG
1 TCGCCGGAGCA
4413 TCGCCGGAGCA
1 TCGCCGGAGCA
4424 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:4876 original size:33 final size:33
Alignment explanation
Indices: 4813--5003 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
4803 TGGCCCGGGG
* * *
4813 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
4845 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * *
4878 CTGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCCGATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * * *
4919 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
4951 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
4984 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
5004 TCACGCACAA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 38 0.29
33 62 0.47
35 4 0.03
37 1 0.01
38 4 0.03
40 1 0.01
41 21 0.16
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:4916 original size:106 final size:106
Alignment explanation
Indices: 4791--5011 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
4781 CTGTGCGGCA
*
4791 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
4856 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
4897 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
4962 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
*
5003 CTCACGCAC
1 CTCCCGCAC
5012 AAGCGGCCTG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.16
Consensus pattern (106 bp):
CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
Found at i:5097 original size:169 final size:169
Alignment explanation
Indices: 4897--5474 Score: 1011
Period size: 169 Copynumber: 3.4 Consensus size: 169
4887 GTGACCGAGG
*
4897 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
4962 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGCGGCCTGATGGT
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGT
*
5027 GACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 GACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
5066 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
5131 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGGGGCCTGATGG
* *
5196 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
130 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
5236 CTCCCGCACCAATGG-CC-GGG--GCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
5297 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGCCTGATGGT
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGT
5362 GACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 GACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
5401 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
5466 GACCGAGGC
66 GACCGAGGC
5475 ACGCACACGT
Statistics
Matches: 390, Mismatches: 14, Indels: 10
0.94 0.03 0.02
Matches are distributed among these distances:
165 65 0.17
166 92 0.24
167 3 0.01
168 3 0.01
169 164 0.42
170 63 0.16
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.17
Consensus pattern (169 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGT
GACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:5157 original size:33 final size:33
Alignment explanation
Indices: 5088--5172 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
5078 TGGCCCGGGG
* * *
5088 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
5120 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
5153 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
5173 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:5326 original size:33 final size:33
Alignment explanation
Indices: 5257--5338 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
5247 ATGGCCGGGG
* * * *
5257 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
5289 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
5322 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
5339 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:13390 original size:11 final size:11
Alignment explanation
Indices: 13374--13406 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13364 CGATAATGTC
13374 TCGCCGGAGCA
1 TCGCCGGAGCA
*
13385 TCGCCGGAGCG
1 TCGCCGGAGCA
13396 TCGCCGGAGCA
1 TCGCCGGAGCA
13407 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:13857 original size:33 final size:33
Alignment explanation
Indices: 13794--13983 Score: 204
Period size: 33 Copynumber: 5.6 Consensus size: 33
13784 TGGCCCGGGG
* * *
13794 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
13826 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * *
13859 CTGCCGATGGTGACCGAGGCCCCGCACCAATGGCCCGGGG
1 TTGCCGATGGTGACCGAGG---C-CACC---CGCCTGGGA
* * * *
13899 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
13931 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
13964 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
13984 TCACGCACAA
Statistics
Matches: 131, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
32 38 0.29
33 62 0.47
35 4 0.03
36 1 0.01
37 4 0.03
39 1 0.01
40 21 0.16
ACGTcount: A:0.16, C:0.32, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:13907 original size:105 final size:105
Alignment explanation
Indices: 13774--13983 Score: 402
Period size: 105 Copynumber: 2.0 Consensus size: 105
13764 GTGCGGCACT
*
13774 CCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
13839 CCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGC
66 CCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGC
13879 CCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
*
13944 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC
66 CCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGC
13984 TCACGCACAA
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.16, C:0.33, G:0.36, T:0.16
Consensus pattern (105 bp):
CCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
CCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGC
Found at i:14079 original size:169 final size:169
Alignment explanation
Indices: 13879--14458 Score: 1018
Period size: 169 Copynumber: 3.4 Consensus size: 169
13869 TGACCGAGGC
*
13879 CCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
13944 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGCGGCCTGATGGTGA
66 CCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGA
*
14009 CCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
131 CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
14048 CCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
*
14113 CCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTG
66 CCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGGGGCCTGATGGTG
* *
14178 ACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCACT
130 ACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
14218 CCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
14282 CCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGCCTGATGGTGA
66 CCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGA
*
14347 CCGAGGCTCCCGCACCCAGCGCTCGGTTCTGTGCGGCACT
131 CCGAGGCTCCCGCA-CCAACGCTCGGTTCTGTGCGGCACT
**
14387 CCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGTGA
1 CCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
14452 CCGAGGC
66 CCGAGGC
14459 ACGCACACGT
Statistics
Matches: 393, Mismatches: 15, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
168 29 0.07
169 245 0.62
170 119 0.30
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (169 bp):
CCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
CCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGGCCTGATGGTGA
CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
Found at i:14137 original size:33 final size:33
Alignment explanation
Indices: 14068--14152 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
14058 TGGCCCGGGG
* * *
14068 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
14100 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
14133 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
14153 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:14309 original size:33 final size:33
Alignment explanation
Indices: 14240--14321 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
14230 GCCGGGGTTG
* * * *
14240 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
14272 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
14305 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
14322 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:22358 original size:11 final size:11
Alignment explanation
Indices: 22342--22374 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
22332 CGATAATGTC
22342 TCGCCGGAGCA
1 TCGCCGGAGCA
*
22353 TCGCCGGAGCG
1 TCGCCGGAGCA
22364 TCGCCGGAGCA
1 TCGCCGGAGCA
22375 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:22825 original size:33 final size:33
Alignment explanation
Indices: 22762--22951 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
22752 TGGCCCGGGG
* * *
22762 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
22794 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * *
22827 CTGCCGATGGTGACCGAGGCTC-CCGCACCAATGGCCCGGG
1 TTGCCGATGGTGACCGAGGC-CACC-CGCC--T-G---GGA
* * * *
22867 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
22899 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
22932 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
22952 TCACGCACAA
Statistics
Matches: 131, Mismatches: 16, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
32 35 0.27
33 65 0.50
34 4 0.03
35 1 0.01
36 2 0.02
37 1 0.01
38 3 0.02
39 3 0.02
40 17 0.13
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:22880 original size:105 final size:106
Alignment explanation
Indices: 22740--22959 Score: 406
Period size: 105 Copynumber: 2.1 Consensus size: 106
22730 CTGTGCGGCA
*
22740 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
22805 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
22846 CTCCCGCACCAATGGCCC-GGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
22910 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
*
22951 CTCACGCAC
1 CTCCCGCAC
22960 AAGCGGCCTG
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
105 93 0.84
106 18 0.16
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (106 bp):
CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
Found at i:23040 original size:137 final size:136
Alignment explanation
Indices: 22692--23128 Score: 514
Period size: 137 Copynumber: 3.2 Consensus size: 136
22682 CGTCGGGGTT
22692 GCCGATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGGCC
1 GCCGATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGGCC
22757 CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCC
66 CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCA-CCGCC
** *
22822 TGGGACT
130 TAAGACG
* * **
22829 GCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGTTACCGATG-GTG-AC-CGAGACACC-
1 GCCGATGGTGACCGAGGCTCCCGCACCAA-CGCCC-GGTT-CTG-TGCG-GCACTCCCG-CACCA
* * * * * * *
22890 --CGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCT
60 ATGGCCCGGGGTTGCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGC-
22953 CA-CGCAC-AAG-CG
123 CACCGC-CTAAGACG
* *
22965 GCCTGATGGTGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGC
1 GCC-GATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGGC
23030 CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGC
65 CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCA-CCGC
** **
23095 CTTGGATT
129 CTAAGACG
*
23103 GCCGATGGTGACCGAGGCTCACGCAC
1 GCCGATGGTGACCGAGGCTCCCGCAC
23129 ACGGGGGCCT
Statistics
Matches: 247, Mismatches: 33, Indels: 40
0.77 0.10 0.12
Matches are distributed among these distances:
133 3 0.01
134 9 0.04
135 8 0.03
136 40 0.16
137 127 0.51
138 40 0.16
139 8 0.03
140 9 0.04
141 3 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.16
Consensus pattern (136 bp):
GCCGATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGGCC
CGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCGCCT
AAGACG
Found at i:23069 original size:169 final size:170
Alignment explanation
Indices: 22846--23426 Score: 1042
Period size: 169 Copynumber: 3.4 Consensus size: 170
22836 GTGACCGAGG
*
22846 CTCCCGCACCAATGGCCC-GGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
22910 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGCGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
22974 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
23014 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
23079 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
23144 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
23184 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
23248 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
23313 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
23353 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
23418 GACCGAGGC
66 GACCGAGGC
23427 ACGCACACGT
Statistics
Matches: 397, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
168 18 0.05
169 260 0.65
170 119 0.30
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:23105 original size:33 final size:33
Alignment explanation
Indices: 23036--23120 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
23026 TGGCCCGGGG
* * *
23036 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
23068 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
23101 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
23121 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:23277 original size:33 final size:33
Alignment explanation
Indices: 23208--23289 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
23198 GCCGGGGTTG
* * * *
23208 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
23240 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
23273 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
23290 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:31290 original size:11 final size:11
Alignment explanation
Indices: 31274--31306 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
31264 CGATAATGTC
31274 TCGCCGGAGCA
1 TCGCCGGAGCA
*
31285 TCGCCGGAGCG
1 TCGCCGGAGCA
31296 TCGCCGGAGCA
1 TCGCCGGAGCA
31307 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:31733 original size:32 final size:32
Alignment explanation
Indices: 31696--31879 Score: 154
Period size: 32 Copynumber: 5.4 Consensus size: 32
31686 ATGGCCCGGG
*
31696 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGA
* *
31728 TTGCCGAT-GTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGA
* * * * *
31760 CTGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCCGATGGTGACCGAGACACCCG------T---CTGGGA
* *
31801 TTACCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGA
* *
31833 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGA
31866 TTGCCGATGGTGAC
1 TTGCCGATGGTGAC
31880 GAGGCTCACG
Statistics
Matches: 121, Mismatches: 19, Indels: 23
0.74 0.12 0.14
Matches are distributed among these distances:
31 8 0.07
32 53 0.44
33 34 0.28
35 1 0.01
41 25 0.21
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.18
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGTCTGGGA
Found at i:31821 original size:105 final size:104
Alignment explanation
Indices: 31675--31892 Score: 384
Period size: 105 Copynumber: 2.1 Consensus size: 104
31665 CTGTGCGGCA
*
31675 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGAT-GTG
1 CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
31739 ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGA-CGAGG
31779 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCC-GGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
31844 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACGAGG
65 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACGAGG
*
31884 CTCACGCAC
1 CTCCCGCAC
31893 AAGCGGCCTG
Statistics
Matches: 109, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
104 18 0.17
105 55 0.50
106 36 0.33
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (104 bp):
CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACGAGG
Found at i:31969 original size:168 final size:169
Alignment explanation
Indices: 31779--32357 Score: 1011
Period size: 168 Copynumber: 3.4 Consensus size: 169
31769 GTGACCGAGG
*
31779 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
31844 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA-CGAGGCTCACGCACA-AGCGGCCTGATGG
65 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
31907 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
130 TGACCGAGGCTCCCGCACCAACGCTCGGTACTGTGCGGCA
31947 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
32012 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
65 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
32077 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
130 TGACCGAGGCTCCCGCACCAACGCTCGGTACTGTGCGGCA
*
32117 CTCCCGCACCAATGGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
* *
32182 ACCGAGGCCA-CCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGGT
66 ACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGT
32246 GACCGAGGCTCCCGCACCAACGCTCGGTACTGTGCGGCA
131 GACCGAGGCTCCCGCACCAACGCTCGGTACTGTGCGGCA
**
32285 CTCCCGCACCAATGGCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
32350 ACCGAGGC
66 ACCGAGGC
32358 ACGCACACGT
Statistics
Matches: 395, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
168 258 0.65
169 74 0.19
170 63 0.16
ACGTcount: A:0.17, C:0.33, G:0.34, T:0.17
Consensus pattern (169 bp):
CTCCCGCACCAATGGCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
ACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGT
GACCGAGGCTCCCGCACCAACGCTCGGTACTGTGCGGCA
Found at i:32038 original size:33 final size:33
Alignment explanation
Indices: 31969--32053 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
31959 TGGCCCGGGG
* * *
31969 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
32001 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
32034 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
32054 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:32043 original size:137 final size:137
Alignment explanation
Indices: 31626--32061 Score: 497
Period size: 137 Copynumber: 3.2 Consensus size: 137
31616 CCGTCGGGGG
31626 TTGCCGATGGTGACCGAGGCTCCCGC-CCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGG
1 TTGCCGATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGG
31690 CCC-GGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGAT-GTGACCGAGGCCACCCG
66 CCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCG
*
31753 CCTGGGA
131 CCTAGGA
* * * **
31760 CTGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGGTTACCGATG-GTG-AC-CGAGACA
1 TTGCCGATGGTGACCGAGGCTCCCGCACCAA-CGCCC--GGTT-CTG-TGCG-GCACTCCCG-CA
* * * * * * *
31822 CC---CGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA-CGAG
59 CCAATGGCCCGGGGTTGCCGATGGTGACCGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAG
*
31883 GCTCA--CGCACAAGCG-
123 GC-CACCCGC-CTAG-GA
* *
31898 --GCCTGATGGTGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATG
1 TTGCC-GATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATG
31961 GCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCC
65 GCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCC
*
32026 GCCTTGGA
130 GCCTAGGA
*
32034 TTGCCGATGGTGACCGAGGCTCACGCAC
1 TTGCCGATGGTGACCGAGGCTCCCGCAC
32062 ACGGGGGCCT
Statistics
Matches: 244, Mismatches: 31, Indels: 51
0.75 0.10 0.16
Matches are distributed among these distances:
132 3 0.01
133 9 0.04
134 31 0.13
135 32 0.13
136 42 0.17
137 71 0.29
138 37 0.15
139 16 0.07
140 3 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (137 bp):
TTGCCGATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCGGCACTCCCGCACCAATGG
CCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCG
CCTAGGA
Found at i:32220 original size:32 final size:33
Alignment explanation
Indices: 32141--32221 Score: 103
Period size: 32 Copynumber: 2.5 Consensus size: 33
32131 GTCGGGGTTG
* * * *
32141 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
32173 CCGATGGTGACCGAGGCCA-CCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
32205 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
32222 GCACGCACAC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
32 40 0.93
33 3 0.07
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.19
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:44797 original size:11 final size:11
Alignment explanation
Indices: 44781--44813 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
44771 CGATAATGTC
44781 TCGCCGGAGCA
1 TCGCCGGAGCA
*
44792 TCGCCGGAGCG
1 TCGCCGGAGCA
44803 TCGCCGGAGCA
1 TCGCCGGAGCA
44814 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:45267 original size:33 final size:33
Alignment explanation
Indices: 45204--45394 Score: 197
Period size: 33 Copynumber: 5.6 Consensus size: 33
45194 TGGCCCGGGG
* * *
45204 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
45236 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * *
45269 CTGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCCGATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * * *
45310 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
45342 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
45375 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
45395 TCACGCACAA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
32 38 0.29
33 62 0.47
35 4 0.03
37 1 0.01
38 4 0.03
40 1 0.01
41 21 0.16
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:45321 original size:106 final size:106
Alignment explanation
Indices: 45182--45402 Score: 415
Period size: 106 Copynumber: 2.1 Consensus size: 106
45172 CTGTGCGGCA
*
45182 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
45247 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
45288 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
45353 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
*
45394 CTCACGCAC
1 CTCCCGCAC
45403 AAGCGGCCTG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 112 1.00
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.16
Consensus pattern (106 bp):
CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
Found at i:45488 original size:169 final size:170
Alignment explanation
Indices: 45288--45869 Score: 1042
Period size: 169 Copynumber: 3.4 Consensus size: 170
45278 GTGACCGAGG
*
45288 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
45353 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGCGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
45417 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
45457 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
45522 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
45587 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
*
45627 CTCCCGCACCAATGG-TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
45691 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
45756 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
45796 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
45861 GACCGAGGC
66 GACCGAGGC
45870 ACGCACACGT
Statistics
Matches: 396, Mismatches: 15, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
169 278 0.70
170 118 0.30
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:45548 original size:33 final size:33
Alignment explanation
Indices: 45479--45563 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
45469 TGGCCCGGGG
* * *
45479 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
45511 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
45544 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
45564 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:45720 original size:33 final size:33
Alignment explanation
Indices: 45651--45732 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
45641 GTCGGGGTTG
* * * *
45651 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
45683 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
45716 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
45733 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:58572 original size:11 final size:11
Alignment explanation
Indices: 58556--58588 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
58546 CGATAATGTC
58556 TCGCCGGAGCA
1 TCGCCGGAGCA
*
58567 TCGCCGGAGCG
1 TCGCCGGAGCA
58578 TCGCCGGAGCA
1 TCGCCGGAGCA
58589 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:59041 original size:33 final size:33
Alignment explanation
Indices: 58978--59167 Score: 188
Period size: 33 Copynumber: 5.6 Consensus size: 33
58968 TGGCCCGGGG
* * *
58978 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
59010 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * * *
59043 CTGCCGATGGTGACCGAGGCTCCCGCACCAATGGCCCGGGG
1 TTGCCGATGGTGACCGAGG----C-CACC---CGCCTGGGA
* * * *
59084 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
59116 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
59149 TTGCCGATGGTGA-CGAGGC
1 TTGCCGATGGTGACCGAGGC
59168 TCACGCACAA
Statistics
Matches: 130, Mismatches: 18, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
32 44 0.34
33 55 0.42
35 4 0.03
37 1 0.01
38 4 0.03
40 1 0.01
41 21 0.16
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:59081 original size:106 final size:105
Alignment explanation
Indices: 58956--59175 Score: 404
Period size: 106 Copynumber: 2.1 Consensus size: 105
58946 CTGTGCGGCA
*
58956 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
59021 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGA-CGAGG
59062 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
59127 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACGAGG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACGAGG
*
59167 CTCACGCAC
1 CTCCCGCAC
59176 AAGCGGCCTG
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
105 13 0.12
106 98 0.88
ACGTcount: A:0.16, C:0.33, G:0.35, T:0.16
Consensus pattern (105 bp):
CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACGAGG
Found at i:59320 original size:33 final size:33
Alignment explanation
Indices: 59251--59335 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
59241 ATGGCCGGGG
* * *
59251 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
59283 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
59316 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
59336 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:59426 original size:169 final size:170
Alignment explanation
Indices: 59062--59641 Score: 1033
Period size: 169 Copynumber: 3.4 Consensus size: 170
59052 GTGACCGAGG
*
59062 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* * *
59127 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA-CGAGGCTCACGCACA-AGCGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
*
59190 TGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
59230 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
59294 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
* *
59359 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
59399 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
59463 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
59528 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
59568 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
59633 GACCGAGGC
66 GACCGAGGC
59642 ACGCACACGT
Statistics
Matches: 396, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
167 82 0.21
168 30 0.08
169 228 0.58
170 56 0.14
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (170 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:59492 original size:33 final size:33
Alignment explanation
Indices: 59423--59504 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
59413 GCCGGGGTTG
* * * *
59423 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
59455 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
59488 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
59505 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:67544 original size:11 final size:11
Alignment explanation
Indices: 67530--67562 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
67520 CGATAATGTC
67530 TCGCCGGAGCA
1 TCGCCGGAGCA
*
67541 TCGCCGGAGCG
1 TCGCCGGAGCA
67552 TCGCCGGAGCA
1 TCGCCGGAGCA
67563 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:68022 original size:32 final size:33
Alignment explanation
Indices: 67949--68136 Score: 188
Period size: 32 Copynumber: 5.6 Consensus size: 33
67939 TGGCCCGGGG
* *
67949 TTGCCGATGGTGACCGA-GACACCCGTCTGGG-
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
67980 TTGCCGATGGTGACCGAGGCCA-CCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
* * *
68012 CTGCCGATGGTGACCGAGGCTC-CCGCACCAATGGCCGGGG
1 TTGCCGATGGTGACCGAGGC-CACC-CGCC--T----GGGA
* * * *
68052 TTACCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
68084 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
68117 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
68137 TCACGCACAA
Statistics
Matches: 129, Mismatches: 15, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
31 25 0.19
32 41 0.32
33 34 0.26
34 3 0.02
36 2 0.02
38 3 0.02
39 3 0.02
40 18 0.14
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:68107 original size:104 final size:105
Alignment explanation
Indices: 67927--68144 Score: 386
Period size: 104 Copynumber: 2.1 Consensus size: 105
67917 CTGTGCGGCA
*
67927 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTGCCGATGGTG
67992 ACCGAGGCCA-CCGCCTGGGACTGCCGATGGTGACCGAGG
66 ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
68031 CTCCCGCACCAATGG-CCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGG-TTGCCGATGGT
*
68095 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG
65 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
*
68136 CTCACGCAC
1 CTCCCGCAC
68145 AAGCGGCCTG
Statistics
Matches: 109, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
103 36 0.33
104 37 0.34
105 36 0.33
ACGTcount: A:0.16, C:0.33, G:0.35, T:0.16
Consensus pattern (105 bp):
CTCCCGCACCAATGGCCCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTGCCGATGGTG
ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGG
Found at i:68115 original size:33 final size:33
Alignment explanation
Indices: 68055--68136 Score: 130
Period size: 33 Copynumber: 2.5 Consensus size: 33
68045 GCCGGGGTTA
* * *
68055 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTG
68087 CCGATGGTGACCGAGGCCACCCGCCTGGGATTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTG
68120 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
68137 TCACGCACAA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 14 0.30
33 32 0.70
ACGTcount: A:0.16, C:0.30, G:0.37, T:0.17
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTG
Found at i:68289 original size:33 final size:33
Alignment explanation
Indices: 68220--68304 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
68210 TGGCCCGGGG
* * *
68220 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
68252 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
68285 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
68305 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:68424 original size:32 final size:32
Alignment explanation
Indices: 68387--68468 Score: 110
Period size: 32 Copynumber: 2.6 Consensus size: 32
68377 ATGGTCGGGG
* *
68387 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGCCTGGGA
* * *
68419 TTGCCGATGGTGACCGGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGACACCCGCCTGGGA
*
68451 TTACCGATGGTGACCGAG
1 TTGCCGATGGTGACCGAG
68469 GCGCACGCAC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGCCTGGGA
Found at i:68489 original size:166 final size:169
Alignment explanation
Indices: 68034--68606 Score: 987
Period size: 168 Copynumber: 3.4 Consensus size: 169
68024 ACCGAGGCTC
*
68034 CCGCACCAATGG-CCGGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * *
68098 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACA-AGCGGCCTGATGGTGA
66 CGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTGA
*
68162 CCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
131 CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
68201 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
68266 CGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTGA
66 CGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTGA
* *
68331 CCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCACT
131 CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
*
68370 CC-CACCAATGG-TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* *
68433 CG-GGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGGTGA
66 CGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTGA
68497 CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
131 CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
**
68536 CCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACA-CCGTCTGTTTTTGCCGATGGTGA
1 -CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
68600 CCGAGGC
65 CCGAGGC
68607 ACGCACGTGG
Statistics
Matches: 385, Mismatches: 15, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
166 97 0.25
167 67 0.17
168 140 0.36
169 81 0.21
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.17
Consensus pattern (169 bp):
CCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGGTGA
CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCACT
Done.