Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009533.1 Hibiscus syriacus cultivar Beakdansim tig00116235_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53251
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Found at i:5985 original size:30 final size:29
Alignment explanation
Indices: 5949--6033 Score: 98
Period size: 32 Copynumber: 2.8 Consensus size: 29
5939 GCGTGAGCCC
*
5949 CGGTCACCATCGGCAATCCCAGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGGT-GCCT
* *
5979 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGC-AAACC-CA-GGGTGCCT
*
6011 CGGTCACCATCGGCAACCCCAGG
1 CGGTCACCATCGGCAAACCCAGG
6034 CCATTGGTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
29 2 0.04
30 15 0.32
31 8 0.17
32 18 0.38
33 4 0.09
ACGTcount: A:0.21, C:0.36, G:0.27, T:0.15
Consensus pattern (29 bp):
CGGTCACCATCGGCAAACCCAGGGTGCCT
Found at i:6151 original size:31 final size:32
Alignment explanation
Indices: 6081--6212 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
6071 GTGCGTGAGG
* *
6081 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
6113 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
6144 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
6176 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
6208 CTCGG
1 CTCGG
6213 CAACCCCAGG
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
31 27 0.29
32 58 0.62
33 8 0.09
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:6180 original size:63 final size:64
Alignment explanation
Indices: 6079--6212 Score: 200
Period size: 63 Copynumber: 2.1 Consensus size: 64
6069 TGGTGCGTGA
*
6079 GGCTCGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGAC-GGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * *
6142 GTCTCGGTCACCATCGGCAAACCCAGACGGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
6206 GGCTCGG
1 GGCTCGG
6213 CAACCCCAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
63 42 0.67
64 21 0.33
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (64 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:6367 original size:31 final size:31
Alignment explanation
Indices: 6266--6369 Score: 83
Period size: 31 Copynumber: 3.4 Consensus size: 31
6256 GTTGGGTGCG
6266 GGGT-CCTCGGTCACCATCGGCAACCCCCGAC
1 GGGTGCCTCGGTCACCATC-GCAACCCCCGAC
* ** *
6297 GGGTGCCTCGG-CAACC--C-CAGCCACGGTGTGC
1 GGGTGCCTCGGTC-ACCATCGCAACC-C-CCG-AC
*
6328 GGGGGCCTCGGTCACCATCGCAACCCCCGAC
1 GGGTGCCTCGGTCACCATCGCAACCCCCGAC
6359 GGGTGCCTCGG
1 GGGTGCCTCGG
6370 CAACCCCAGG
Statistics
Matches: 54, Mismatches: 10, Indels: 18
0.66 0.12 0.22
Matches are distributed among these distances:
28 4 0.07
29 1 0.02
30 2 0.04
31 30 0.56
32 11 0.20
33 2 0.04
34 4 0.07
ACGTcount: A:0.13, C:0.41, G:0.33, T:0.12
Consensus pattern (31 bp):
GGGTGCCTCGGTCACCATCGCAACCCCCGAC
Found at i:6369 original size:62 final size:63
Alignment explanation
Indices: 6259--6392 Score: 236
Period size: 62 Copynumber: 2.1 Consensus size: 63
6249 GCCGAGAGTT
*
6259 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCA-GCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
6321 GGTGTGCGGGGGCCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GG-GTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
6384 GGGTGCGGG
1 GGGTGCGGG
6393 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
62 40 0.58
63 29 0.42
ACGTcount: A:0.13, C:0.40, G:0.36, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:6494 original size:30 final size:30
Alignment explanation
Indices: 6427--6549 Score: 156
Period size: 30 Copynumber: 4.0 Consensus size: 30
6417 GTGCGTGAGG
* * *
6427 CTCGGTCACCATCGGCAATCCCAGGCGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACG-GGT
* *
6458 CTCGGTCACCATTGGCAAAGCCAGACGGGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGT
6488 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGAC-GG-GT
* *
6520 CTCGGTCACCATCGGCAACCCCCGACGGGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGT
6550 GCCTCGGCAA
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
30 28 0.35
31 27 0.33
32 26 0.32
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (30 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:6527 original size:32 final size:31
Alignment explanation
Indices: 6427--6556 Score: 154
Period size: 32 Copynumber: 4.2 Consensus size: 31
6417 GTGCGTGAGG
* * *
6427 CTCGGTCACCATCGGCAATCCCAGGCGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGGC
* * *
6458 CTCGGTCACCATTGGCAAAGCCAGAC-GGGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGGC
*
6488 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGG-GC
* *
6520 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGG-GC
6552 CTCGG
1 CTCGG
6557 CAACCCCAGG
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
30 26 0.30
31 24 0.28
32 36 0.42
ACGTcount: A:0.18, C:0.37, G:0.29, T:0.15
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGGC
Found at i:6674 original size:344 final size:345
Alignment explanation
Indices: 6020--6660 Score: 1160
Period size: 344 Copynumber: 1.9 Consensus size: 345
6010 TCGGTCACCA
**
6020 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
6085 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGT
66 GTCACCATCGGCAACCCAGGC-GGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGT
*
6150 CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCA
130 CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
* * *
6215 ACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCAC
195 ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
*
6280 CATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGCCACGGTGTGCGGGGGCCTCGGTCACCA
260 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGCCACGGTGTGCGGGGGCCTCGGTCACCA
6345 TCGCAACCCCCGACGGGTGCC
325 TCGCAACCCCCGACGGGTGCC
*
6366 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
6431 GTCACCATCGGCAATCCCAGGC-GTGGCCTCGGTCACCATTGGCAAAGCCAGACGG-GTCTCGGT
66 GTCACCATCGGCAA-CCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGT
6494 CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
130 CACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
6559 ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
195 ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
6624 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAG
260 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAG
6661 TCCATTGGTG
Statistics
Matches: 284, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
344 170 0.60
345 31 0.11
346 76 0.27
347 7 0.02
ACGTcount: A:0.18, C:0.35, G:0.34, T:0.13
Consensus pattern (345 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGTC
ACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAA
CCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACC
ATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGCCACGGTGTGCGGGGGCCTCGGTCACCAT
CGCAACCCCCGACGGGTGCC
Found at i:6693 original size:95 final size:95
Alignment explanation
Indices: 6324--6705 Score: 327
Period size: 95 Copynumber: 4.1 Consensus size: 95
6314 CAGCCACGGT
*
6324 GTGCGGGGGCCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* *
6388 GCGGGAGTGCCGCACAGAACCGAGCG-TTG
66 GCGGGAGTGCCGCACAGAACCGAGAGCTGG
* * *** * *
6417 GTGCGTGAGG-CTCGGTCACCATCGGCAA-TCCC-A-GGCGTGGCCTCGGTC-ACCATTGGCAAA
1 GTGCG-GGGGCCTCGGTCACCATCGGCAACACCCGACGG-GT-GCCTCGG-CAACCCCAGGCCAC
*** ** * * * * * ***
6477 GCCAGACGGGTCT-CGGTCAC-CATCGGCA-AACCCA
62 GGGTG-CGGGAGTGCCG-CACAGAACCG-AGAGCTGG
* * * *
6511 G-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* *
6575 GCGGGAGTGCCGCACAGAGCCGAGAGTTGG
66 GCGGGAGTGCCGCACAGAACCGAGAGCTGG
* **
6605 GTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGT
1 GTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
*
6670 GCGGGAGTGCCGCACAGAACCGAGCGCTGG
66 GCGGGAGTGCCGCACAGAACCGAGAGCTGG
6700 GTGCGG
1 GTGCGG
6706 CAGCCTCGCA
Statistics
Matches: 217, Mismatches: 54, Indels: 34
0.71 0.18 0.11
Matches are distributed among these distances:
91 2 0.01
92 5 0.02
93 72 0.33
94 44 0.20
95 92 0.42
96 2 0.01
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (95 bp):
GTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
GCGGGAGTGCCGCACAGAACCGAGAGCTGG
Found at i:14900 original size:33 final size:31
Alignment explanation
Indices: 14863--14950 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
14853 GCGTGAGCCC
*
14863 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGC-GGT-GCCT
* ** *
14896 CGGTCACCATCGGCAAAACCATACGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGTGCCT
*
14927 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
14951 CATTGGTGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
31 23 0.50
32 3 0.07
33 20 0.43
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (31 bp):
CGGTCACCATCGGCAAACCCAGGCGGTGCCT
Found at i:15035 original size:31 final size:32
Alignment explanation
Indices: 14997--15127 Score: 180
Period size: 32 Copynumber: 4.2 Consensus size: 32
14987 GTGCGTGAGG
* *
14997 CTCGGTCACCATCGGC-AACCCAGGCGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGTGGT
15028 CTCGGTCACCATCGGCAAACCCAGACGG-GTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGTG-GT
15060 CTCGGTCACCATCGGCAAACCCAGACGGT-GT
1 CTCGGTCACCATCGGCAAACCCAGACGGTGGT
* *
15091 CTCGGTCACCATCGGCAACCCCCGACGGGTGG-
1 CTCGGTCACCATCGGCAAACCCAGAC-GGTGGT
15123 CTCGG
1 CTCGG
15128 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 4, Indels: 9
0.88 0.04 0.09
Matches are distributed among these distances:
31 43 0.47
32 47 0.52
33 1 0.01
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGTGGT
Found at i:15064 original size:32 final size:31
Alignment explanation
Indices: 14997--15127 Score: 183
Period size: 31 Copynumber: 4.2 Consensus size: 31
14987 GTGCGTGAGG
* *
14997 CTCGGTCACCATCGGC-AACCCAGGCGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGT-GT
15028 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
15060 CTCGGTCACCATCGGCAAACCCAGACGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGTGT
* * *
15091 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
15123 CTCGG
1 CTCGG
15128 CAACCCCAGG
Statistics
Matches: 92, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
31 45 0.49
32 44 0.48
33 3 0.03
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.15
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAAACCCAGACGGTGT
Found at i:15096 original size:63 final size:63
Alignment explanation
Indices: 14995--15127 Score: 205
Period size: 63 Copynumber: 2.1 Consensus size: 63
14985 TGGTGCGTGA
*
14995 GGCTCGGTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * *
15058 GTCTCGGTCACCATCGGCAAACCCAGACGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
15121 GGCTCGG
1 GGCTCGG
15128 CAACCCCAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
63 52 0.83
64 11 0.17
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (63 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:15251 original size:30 final size:31
Alignment explanation
Indices: 15211--15307 Score: 92
Period size: 30 Copynumber: 3.1 Consensus size: 31
15201 CAACCCCCGA
15211 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * ****
15242 CGGG-GCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
15272 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
15304 CGGG
1 CGGG
15308 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
30 16 0.33
31 16 0.33
32 16 0.33
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:15272 original size:62 final size:63
Alignment explanation
Indices: 15174--15307 Score: 261
Period size: 62 Copynumber: 2.1 Consensus size: 63
15164 GCCGAGAGTT
15174 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
15237 GGGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
15299 GGGTGCGGG
1 GGGTGCGGG
15308 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
62 61 0.86
63 10 0.14
ACGTcount: A:0.13, C:0.40, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:15425 original size:157 final size:157
Alignment explanation
Indices: 15020--15440 Score: 521
Period size: 157 Copynumber: 2.7 Consensus size: 157
15010 GGCAACCCAG
* * *
15020 GCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAAACCCAGA
1 GCGG-GGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATAGGCAAAGCCAGA
*
15085 CGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGG
65 CGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGG
* * *
15150 GAGTTCCGGACAGAGCCGAGAGTTGGGT
130 GAGTGCCGCACAGAACCGAGAGTTGGGT
* * ** * * ***
15178 GCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG-CAACCCCAGGCCACGGGTG
1 GCGGGG-CCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTC-ACCATAGGCAAAGCCAG
* *
15242 -CGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCG
64 ACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCG
*
15306 GGAGTGCCGCACAGAACCGAGCGTT-GGT
129 GGAGTGCCGCACAGAACCGAGAGTTGGGT
* * *
15334 GCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCA
1 GCG-G-GGCCTCGGTCACCATCGGCAAACCCAGACGGGT-GCCTCGGTCACCATAGGCAAAGCCA
* * *
15398 GAC-GTGTCTC-GTCACCATCGGCAAACCCAGACGGGTGTCTCGG
63 GACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
15441 TCACCATCGG
Statistics
Matches: 221, Mismatches: 35, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
156 63 0.29
157 107 0.48
158 51 0.23
ACGTcount: A:0.17, C:0.35, G:0.34, T:0.14
Consensus pattern (157 bp):
GCGGGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATAGGCAAAGCCAGAC
GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
AGTGCCGCACAGAACCGAGAGTTGGGT
Found at i:15449 original size:32 final size:32
Alignment explanation
Indices: 15342--15472 Score: 160
Period size: 32 Copynumber: 4.2 Consensus size: 32
15332 GTGCGTGAGG
* *
15342 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
15375 CTCGGTCACCATTGGCAAAGCCAGAC--GTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
15405 CTC-GTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
15436 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
15468 CTCGG
1 CTCGG
15473 CAACCCCAGG
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
29 20 0.24
30 4 0.05
31 9 0.11
32 30 0.35
33 22 0.26
ACGTcount: A:0.18, C:0.37, G:0.29, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:15510 original size:345 final size:342
Alignment explanation
Indices: 14936--15588 Score: 1121
Period size: 345 Copynumber: 1.9 Consensus size: 342
14926 TCGGTCACCA
**
14936 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
15001 GTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGT
66 GTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCGGT
*
15066 CACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAA
130 CACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAA
* * *
15131 CCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCACC
195 CCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACC
*
15196 ATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGGTCACCATC
260 ATCGGCAACACCCGAC--GTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGGTCACCATC
15261 GGCAACCCCCGACGGGTGCC
323 GGCAACCCCCGACGGGTGCC
*
15281 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
15346 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGAC-GTGTCTC-G
66 GTCACCATCGGCAA-CCCAGGC-GGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGG
15409 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
129 TCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
15474 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
193 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
* **
15539 CCATCGGCAACACCCGACGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
258 CCATCGGCAACACCCGACGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
15589 AGTGCCGCAC
Statistics
Matches: 292, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
343 29 0.10
344 22 0.08
345 204 0.70
346 7 0.02
347 30 0.10
ACGTcount: A:0.18, C:0.35, G:0.34, T:0.13
Consensus pattern (342 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGTGTCTCGGTC
ACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAAC
CCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACCA
TCGGCAACACCCGACGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGCCTCGGTCACCATCGGC
AACCCCCGACGGGTGCC
Found at i:15597 original size:93 final size:94
Alignment explanation
Indices: 15237--15619 Score: 297
Period size: 93 Copynumber: 4.1 Consensus size: 94
15227 CCCAGGCCAC
*
15237 GGGTGC-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGGCCACGG
*
15301 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
65 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * ***
15330 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATC-CCAGGCGGGTGGCCTCGGTC-ACCATTGG-C
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAA-CACCCGAC-GGT-GCCTCGG-CAACCCCAGGCC
** ** * * * * *
15391 A---AAGCCAGACGTGTCTCGTCAC-CATCGGCA-AACC
61 ACGGGTGCGGGA-GTG-C-CG-CACAGAACCG-AGAGCT
** * * * *
15425 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGGCCACGG
* *
15489 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
65 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* **
15519 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGAC-GTGCCTCGGCAACCCCAGTCCATTGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGG
*
15583 TGCGGGAGTGCCGCACAGAACCGAGCGCT
66 TGCGGGAGTGCCGCACAGAACCGAGAGCT
15612 GGGTGCGG
1 GGGTGCGG
15620 CAGCCTCGCA
Statistics
Matches: 220, Mismatches: 49, Indels: 42
0.71 0.16 0.14
Matches are distributed among these distances:
91 4 0.02
92 4 0.02
93 82 0.37
94 70 0.32
95 52 0.24
96 4 0.02
97 4 0.02
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (94 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGG
TGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:23842 original size:33 final size:31
Alignment explanation
Indices: 23805--23892 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
23795 GCGTGAGCCC
*
23805 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGC-GGT-GCCT
* ** *
23838 CGGTCACCATCGGCAAAACCATACGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGTGCCT
*
23869 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
23893 CATTGGTGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
31 23 0.50
32 3 0.07
33 20 0.43
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (31 bp):
CGGTCACCATCGGCAAACCCAGGCGGTGCCT
Found at i:24036 original size:31 final size:32
Alignment explanation
Indices: 23939--24070 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
23929 GTGCGTGAGG
* *
23939 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
23971 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
24003 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
24034 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
24066 CTCGG
1 CTCGG
24071 CAACCCCAGG
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
31 29 0.31
32 52 0.56
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:24051 original size:63 final size:64
Alignment explanation
Indices: 23937--24070 Score: 200
Period size: 63 Copynumber: 2.1 Consensus size: 64
23927 TGGTGCGTGA
*
23937 GGCTCGGTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * *
24001 GTCTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
24064 GGCTCGG
1 GGCTCGG
24071 CAACCCCAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
63 35 0.56
64 20 0.32
65 8 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (64 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:24195 original size:31 final size:31
Alignment explanation
Indices: 24154--24251 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
24144 CAACCCCCGA
24154 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
* * * ****
24185 CGGGGGCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCACGGGTG
24216 ACGGGTGCCTCGGCAACCCCAGGCCACGGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
24248 CGGG
1 CGGG
24252 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.13, C:0.40, G:0.38, T:0.09
Consensus pattern (31 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGGTG
Found at i:24196 original size:158 final size:158
Alignment explanation
Indices: 24034--24323 Score: 460
Period size: 158 Copynumber: 1.8 Consensus size: 158
24024 CAGACGGTGT
* *
24034 CTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
24099 CGGACAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GC
66 CGCACAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGC
24161 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
128 CTCGGCAACCCCAGGCCACGGGTGCGGGGGC
24192 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
24257 CGCACAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
24322 GG
131 GG
24324 TCACCATTGG
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
157 33 0.27
158 86 0.71
159 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.37, T:0.12
Consensus pattern (158 bp):
CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
CGCACAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTC
GGCAACCCCAGGCCACGGGTGCGGGGGC
Found at i:24216 original size:63 final size:63
Alignment explanation
Indices: 24117--24251 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
24107 GCCGAGAGTT
*
24117 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
24180 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
24243 GGGTGCGGG
1 GGGTGCGGG
24252 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.39, G:0.37, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:24227 original size:95 final size:94
Alignment explanation
Indices: 24003--24228 Score: 235
Period size: 95 Copynumber: 2.4 Consensus size: 94
23993 AGACGGGTGT
* *
24003 CTCGGTCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
24067 TCGGCAACCCCAGGCCACGGGTGCGGGAG
66 TCGGCAACCCCAGGCCACGGGTGCGGGAG
* * * * * ***** *
24096 TTCCGGACA-GAGCCG-AGAGTTGGGTGCGGG-GTCCTCGGTCACCATCGGCAACCCCCGACGGG
1 CT-CGGTCACCATCGGCA-AACCCAG-ACGGGTG-CCTCGGTCACCATCGGCAACCCCCGACGGG
*
24158 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGGG
62 TGCCTCGGCAACCCCAGGCCACGGGTGCGGGAG
* *
24191 CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 -CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
24229 CAACCCCAGG
Statistics
Matches: 99, Mismatches: 25, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
92 1 0.01
93 6 0.06
94 7 0.07
95 77 0.78
96 7 0.07
97 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCC
TCGGCAACCCCAGGCCACGGGTGCGGGAG
Found at i:24360 original size:32 final size:32
Alignment explanation
Indices: 24286--24419 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
24276 GTGCGTGAGG
* *
24286 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
24319 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
24351 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
24383 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
24415 CTCGG
1 CTCGG
24420 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 65 0.71
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:24463 original size:349 final size:347
Alignment explanation
Indices: 23878--24537 Score: 1185
Period size: 349 Copynumber: 1.9 Consensus size: 347
23868 TCGGTCACCA
**
23878 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
23943 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
*
24008 TCACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCA
131 TCACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
* * *
24073 ACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCAC
196 ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
*
24138 CATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
261 CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
24203 TCGGCAACCCCCGACGGGTGCC
326 TCGGCAACCCCCGACGGGTGCC
*
24225 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
24290 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
24355 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
24420 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
194 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
24485 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
259 ACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
24538 AGTGCCGCAC
Statistics
Matches: 298, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
347 76 0.26
348 70 0.23
349 152 0.51
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (347 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCA
ACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCAC
CATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
TCGGCAACCCCCGACGGGTGCC
Found at i:24502 original size:95 final size:95
Alignment explanation
Indices: 24180--24568 Score: 369
Period size: 95 Copynumber: 4.1 Consensus size: 95
24170 CCCAGGCCAC
24180 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
24245 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * * *** *
24274 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * *
24337 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
63 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * *
24372 CAG-ACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
24436 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
24466 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
24531 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
24561 GGGTGCGG
1 GGGTGCGG
24569 CAGCCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
93 4 0.02
94 39 0.17
95 117 0.52
96 27 0.12
97 33 0.15
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:32774 original size:33 final size:32
Alignment explanation
Indices: 32737--32825 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
32727 GCGTGAGCCC
*
32737 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
32770 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
32802 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
32826 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:32913 original size:32 final size:32
Alignment explanation
Indices: 32872--33004 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
32862 GTGCGTGAGG
* *
32872 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
32904 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
32936 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
32968 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
33000 CTCGG
1 CTCGG
33005 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:33128 original size:62 final size:62
Alignment explanation
Indices: 33051--33183 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
33041 GCCGAGAGTT
*
33051 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCAC
33113 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCAC
33175 GGGTGCGGG
1 GGGTGCGGG
33184 AGTGCCGCAC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (62 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCAC
Found at i:33158 original size:31 final size:31
Alignment explanation
Indices: 33062--33160 Score: 87
Period size: 31 Copynumber: 3.2 Consensus size: 31
33052 GGTGCGGGGT
33062 CCTCGGTCACCATCGGCAACCCCCGACGGTG
1 CCTCGGTCACCATCGGCAACCCCCGACGGTG
* * **** *
33093 CCTCGG-CAACC-CCAGGCCACGGGTG-CGGGGG
1 CCTCGGTC-ACCATC-GGCAACCCCCGAC-GGTG
33124 CCTCGGTCACCATCGGCAACCCCCGACGGTG
1 CCTCGGTCACCATCGGCAACCCCCGACGGTG
33155 CCTCGG
1 CCTCGG
33161 CAACCCCAGG
Statistics
Matches: 48, Mismatches: 14, Indels: 12
0.65 0.19 0.16
Matches are distributed among these distances:
30 3 0.06
31 42 0.88
32 3 0.06
ACGTcount: A:0.14, C:0.43, G:0.31, T:0.11
Consensus pattern (31 bp):
CCTCGGTCACCATCGGCAACCCCCGACGGTG
Found at i:33316 original size:31 final size:32
Alignment explanation
Indices: 33218--33350 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
33208 GTGCGTGAGG
* *
33218 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
33251 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
33283 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
33314 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
33346 CTCGG
1 CTCGG
33351 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 29 0.33
32 34 0.38
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:33342 original size:63 final size:65
Alignment explanation
Indices: 33218--33350 Score: 180
Period size: 63 Copynumber: 2.1 Consensus size: 65
33208 GTGCGTGAGG
* * * * *
33218 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
* * *
33283 CTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
33346 CTCGG
1 CTCGG
33351 CAACCCCAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 33 0.55
64 3 0.05
65 24 0.40
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (65 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:33444 original size:346 final size:346
Alignment explanation
Indices: 32811--33467 Score: 1181
Period size: 346 Copynumber: 1.9 Consensus size: 346
32801 TCGGTCACCA
**
32811 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
32876 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
*
32941 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGC
131 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
* * *
33006 AACCCCAGGCCACGGGTGCGGGAGTTCCGGACAGAGCCGAGAGTTGGGTGCGGGGTCCTCGGTCA
196 AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
*
33071 CCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
261 CCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
33136 TCGGCAACCCCCGACGGTGCC
326 TCGGCAACCCCCGACGGTGCC
*
33157 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
33222 GTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGTCTCG
66 GTCACCATCGGCAA-CCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCG
33287 GTCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
130 GTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
33351 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
195 CAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTC
* **
33416 ACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
260 ACCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
33468 AGTGCCGCAC
Statistics
Matches: 297, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
346 227 0.76
347 70 0.24
ACGTcount: A:0.18, C:0.35, G:0.35, T:0.13
Consensus pattern (346 bp):
TCGGCAACCCCAGGCCACGGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
AACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCA
CCATCGGCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCA
TCGGCAACCCCCGACGGTGCC
Found at i:33476 original size:94 final size:95
Alignment explanation
Indices: 33113--33498 Score: 326
Period size: 94 Copynumber: 4.1 Consensus size: 95
33103 CCCAGGCCAC
*
33113 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
33177 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * *** *
33206 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATC-CCAGGCGGGTGGCCTCGGTC-ACCATTGGCA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAA-CACCCGACGGGT-GCCTCGG-CAACCCCAGGCC
* *** * * * * * *
33268 AAGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACC
62 ACGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCT
** * * * *
33304 CAG-AC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
33367 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* **
33397 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
33461 GTGCGGGAGTGCCGCACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
33491 GGGTGCGG
1 GGGTGCGG
33499 CAGCCTCGCA
Statistics
Matches: 221, Mismatches: 53, Indels: 37
0.71 0.17 0.12
Matches are distributed among these distances:
92 4 0.02
93 34 0.15
94 74 0.33
95 65 0.29
96 34 0.15
97 5 0.02
98 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:41668 original size:32 final size:32
Alignment explanation
Indices: 41627--41714 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 32
41617 GCGTGAGCCC
*
41627 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
41660 C-GTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
41691 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
41715 CATTGGTGAG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
31 4 0.09
32 40 0.89
33 1 0.02
ACGTcount: A:0.20, C:0.38, G:0.27, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:41802 original size:32 final size:32
Alignment explanation
Indices: 41761--41893 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
41751 GTGCGTGAGG
* *
41761 CTCGGTCACCATCGGC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
41793 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
41825 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
41857 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
41889 CTCGG
1 CTCGG
41894 CAACCCCAGG
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 83 0.87
33 12 0.13
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:42016 original size:29 final size:30
Alignment explanation
Indices: 41977--42071 Score: 88
Period size: 29 Copynumber: 3.1 Consensus size: 30
41967 CAACCCCCGA
41977 CGGGTGCCTCGGCAACCCCAGGCCACGGTG
1 CGGGTGCCTCGGCAACCCCAGGCCACGGTG
* * ***
42007 CGGG-GCCTCGGTC-ACCATC-GGCAACCCCCG
1 CGGGTGCCTCGG-CAACC-CCAGGCCA-CGGTG
42037 ACGGGTGCCTCGGCAACCCCAGGCCACGGTG
1 -CGGGTGCCTCGGCAACCCCAGGCCACGGTG
42068 CGGG
1 CGGG
42072 AGTGCCGCAC
Statistics
Matches: 48, Mismatches: 10, Indels: 14
0.67 0.14 0.19
Matches are distributed among these distances:
29 14 0.29
30 12 0.25
31 8 0.17
32 14 0.29
ACGTcount: A:0.14, C:0.41, G:0.36, T:0.09
Consensus pattern (30 bp):
CGGGTGCCTCGGCAACCCCAGGCCACGGTG
Found at i:42037 original size:61 final size:62
Alignment explanation
Indices: 41941--42071 Score: 255
Period size: 61 Copynumber: 2.1 Consensus size: 62
41931 CCGAGAGTTG
41941 GGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
42003 GGTGCGGGG-CCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
42064 GGTGCGGG
1 GGTGCGGG
42072 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
61 60 0.87
62 9 0.13
ACGTcount: A:0.14, C:0.40, G:0.35, T:0.11
Consensus pattern (62 bp):
GGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:42147 original size:32 final size:32
Alignment explanation
Indices: 42106--42238 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
42096 GTGCGTGAGG
* * *
42106 CTCGGTCACCATCGGCAATCCCAGGC-GGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
* *
42138 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
42170 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
42202 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
42234 CTCGG
1 CTCGG
42239 CAACCCCAGG
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 87 0.97
33 3 0.03
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:42392 original size:94 final size:94
Alignment explanation
Indices: 42003--42393 Score: 319
Period size: 94 Copynumber: 4.1 Consensus size: 94
41993 CCCAGGCCAC
* *
42003 GGTGCGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC-GGT
1 GGTGCGGAGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* *
42067 GCGGGAGTGCCGCACAGAACCGAGCG-TT
66 GCGGGAGTGCCGCACAGAACCGAGAGCTG
* * * * *
42095 GGTGCGTGAGGCTCGGTCACCATCGGCAA-TCCC-AGGCGGTGGCCTCGGTC-ACCATTGGCAAA
1 GGTGCG-GAGCCTCGGTCACCATCGGCAACACCCGACG-GGT-GCCTCGG-CAACC-----CCAG
** * *
42157 GCCAGACGGGTGTCTCG-GT-CAC-CATCGGCAAACCCAGA-C-G
57 GCC--ACGGGTG-CGGGAGTGC-CGCA-CAG--AACCGAGAGCTG
* *
42197 GGT-----GTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GGTGCGGAGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* *
42257 GCGGGAGTGCCGCACAGAGCCGAGAGTTG
66 GCGGGAGTGCCGCACAGAACCGAGAGCTG
* * **
42286 GGTGCGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGT
1 GGTGCGGAGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
*
42351 GC-GGAGTGCCGCACAGAACCGAGCGCTG
66 GCGGGAGTGCCGCACAGAACCGAGAGCTG
42379 GGTGCGGCAGCCTCG
1 GGTGCGG-AGCCTCG
42394 CACAGCGTCG
Statistics
Matches: 235, Mismatches: 32, Indels: 62
0.71 0.10 0.19
Matches are distributed among these distances:
87 6 0.03
88 2 0.01
89 16 0.07
90 3 0.01
91 7 0.03
92 12 0.05
93 60 0.26
94 61 0.26
95 1 0.00
96 29 0.12
97 6 0.03
98 7 0.03
100 5 0.02
101 9 0.04
102 5 0.02
103 6 0.03
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.13
Consensus pattern (94 bp):
GGTGCGGAGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
GCGGGAGTGCCGCACAGAACCGAGAGCTG
Found at i:50557 original size:33 final size:32
Alignment explanation
Indices: 50520--50608 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
50510 GCGTGAGCCC
*
50520 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAACCCAGGCGGGT-GCCT
* ** *
50553 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
*
50585 CGGTCACCATCGGCAACCCCAGGC
1 CGGTCACCATCGGCAAACCCAGGC
50609 CATTGGTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (32 bp):
CGGTCACCATCGGCAAACCCAGGCGGGTGCCT
Found at i:50693 original size:31 final size:32
Alignment explanation
Indices: 50655--50784 Score: 178
Period size: 31 Copynumber: 4.2 Consensus size: 32
50645 GTGCGTGAGG
* *
50655 CTCGGTCACCATC-GC-AACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
50686 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
50718 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
50749 CTCGGTCACCATCGGCAACCCCCGAC-GGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
50780 CTCGG
1 CTCGG
50785 CAACCCCAGG
Statistics
Matches: 92, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
31 51 0.55
32 29 0.32
33 12 0.13
ACGTcount: A:0.18, C:0.38, G:0.29, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:50755 original size:63 final size:62
Alignment explanation
Indices: 50653--50784 Score: 178
Period size: 63 Copynumber: 2.1 Consensus size: 62
50643 TGGTGCGTGA
*
50653 GGCTCGGTCACCATCGCAACCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GGCTCGGTCACCATCGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGAC-GGT
* * * *
50716 GTCTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGT
1 GGCTCGGTCACCATC-GC-AACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGT
50778 GGCTCGG
1 GGCTCGG
50785 CAACCCCAGG
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
62 9 0.15
63 39 0.64
64 5 0.08
65 8 0.13
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (62 bp):
GGCTCGGTCACCATCGCAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGT
Found at i:50932 original size:59 final size:63
Alignment explanation
Indices: 50831--50960 Score: 216
Period size: 60 Copynumber: 2.1 Consensus size: 63
50821 GCCGAGAGTT
*
50831 GGGTGC-GGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTC-GCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
50892 -GGTGCGGGGGCCTC-GTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
50952 GGGTGCGGG
1 GGGTGCGGG
50961 AGTGCCGCAC
Statistics
Matches: 65, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
59 21 0.32
60 29 0.45
61 15 0.23
ACGTcount: A:0.14, C:0.41, G:0.35, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:50955 original size:153 final size:154
Alignment explanation
Indices: 50753--51031 Score: 422
Period size: 153 Copynumber: 1.8 Consensus size: 154
50743 CGGTGTCTCG
* * *
50753 GTCACCATCGGCAACCCCCGACGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCCGGAC
1 GTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCAC
* *
50818 AGAGCCGAGAGTTGGGTGCG-G-GTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGCA
66 AGAACCGAGAGTT-GGTGCGTGAG-CCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCGCA
50880 ACCCCAGGCCACGGTGCGGGGGCCTC
129 ACCCCAGGCCACGGTGCGGGGGCCTC
50906 GTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
1 GTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
* * * *
50970 CAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCG
65 CAGAACCGAGAGTTGGTGCGTGAGCCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
51032 GTCACCATTG
Statistics
Matches: 113, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
152 18 0.16
153 88 0.78
154 7 0.06
ACGTcount: A:0.16, C:0.37, G:0.35, T:0.12
Consensus pattern (154 bp):
GTCACCATCGGCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCAC
AGAACCGAGAGTTGGTGCGTGAGCCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCGCAAC
CCCAGGCCACGGTGCGGGGGCCTC
Found at i:51083 original size:31 final size:31
Alignment explanation
Indices: 50995--51126 Score: 165
Period size: 31 Copynumber: 4.2 Consensus size: 31
50985 GTGCGTGAGG
* *
50995 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATC-GCAAACCCAGACGGGT-GC
* * *
51028 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCA-TCGCAAACCCAGACGGGTGC
*
51060 CTCGGTCACCATCGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGCAAACCCAGACGGGTGC
* *
51091 CTCGGTCACCATCGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGCAAACCCAGACGGGTGC
51122 CTCGG
1 CTCGG
51127 CAACCCCAGG
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
31 51 0.58
32 12 0.14
33 24 0.27
34 1 0.01
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (31 bp):
CTCGGTCACCATCGCAAACCCAGACGGGTGC
Found at i:51214 original size:95 final size:94
Alignment explanation
Indices: 50892--51275 Score: 341
Period size: 95 Copynumber: 4.1 Consensus size: 94
50882 CCCAGGCCAC
50892 GGTGCGGGGGCCTC-GTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GGTGCGGGGGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* *
50956 GCGGGAGTGCCGCACAGAACCGAGCG-TT
66 GCGGGAGTGCCGCACAGAACCGAGAGCTG
* * * * *** * *
50984 GGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAAA
1 GGTGCG-GGGGCCTCGGTCACCATC-GCAACCCCCGACGGGT-GCCTCGG-CAACCCCAGGCCAC
*** * ** ** * * **
51047 GCCAGACGGGTGT-CTCGGTCACCATCGCA-AACCC
62 GGGTG-CGGGAGTGC-CGCACAGAACCG-AGAGCTG
* * * *
51081 AG-ACGGGTGTCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
1 GGTGCGGGGGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* *
51145 GCGGGAGTGCCGCACAGAGCCGAGAGTTG
66 GCGGGAGTGCCGCACAGAACCGAGAGCTG
* * **
51174 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGG
1 GGTGCGGGGGCCTCGGTCACCATC-GCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
*
51239 TGCGGGAGTGCCGCACAGAACCGAGCGCTG
65 TGCGGGAGTGCCGCACAGAACCGAGAGCTG
51269 GGTGCGG
1 GGTGCGG
51276 CAGCCTCGCA
Statistics
Matches: 218, Mismatches: 59, Indels: 27
0.72 0.19 0.09
Matches are distributed among these distances:
92 10 0.05
93 27 0.12
94 48 0.22
95 102 0.47
96 29 0.13
97 2 0.01
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (94 bp):
GGTGCGGGGGCCTCGGTCACCATCGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
GCGGGAGTGCCGCACAGAACCGAGAGCTG
Done.