Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009537.1 Hibiscus syriacus cultivar Beakdansim tig00116283_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9708
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Found at i:146 original size:32 final size:32
Alignment explanation
Indices: 110--369 Score: 210
Period size: 32 Copynumber: 8.0 Consensus size: 32
100 CGTGAGCCCC
* *
110 GTCACCATCGGCAATCCCAGGCGGGTGCCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGCCTCG
* * *
142 GTCACCATCGGCAAAACCATACGGGTGTCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGCCTCG
* ** ***
174 GTCACCATCGGCAACCCCAGCCATTGGTG-AGGG
1 GTCACCATCGGCAAACCCAG--ACGGGTGCCTCG
* *
207 AGTGC-CGCA-CAG--AACCGAG-CGTTGGTGCGGCTCG
1 -GT-CAC-CATCGGCAAACCCAGACG--GGTGC--CTCG
*
241 GTCACCATCGGC-AACCCAGGCGGGTGGCCTCG
1 GTCACCATCGGCAAACCCAGACGGGT-GCCTCG
*
273 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGCCTCG
*
305 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGCCTCG
* * *
337 GTCACCATCGGCAACCCCCGACGGGTGGCTCG
1 GTCACCATCGGCAAACCCAGACGGGTGCCTCG
369 G
1 G
370 CAACCCCAGG
Statistics
Matches: 184, Mismatches: 28, Indels: 32
0.75 0.11 0.13
Matches are distributed among these distances:
31 4 0.02
32 135 0.73
33 21 0.11
34 19 0.10
35 5 0.03
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15
Consensus pattern (32 bp):
GTCACCATCGGCAAACCCAGACGGGTGCCTCG
Found at i:546 original size:62 final size:63
Alignment explanation
Indices: 416--548 Score: 243
Period size: 61 Copynumber: 2.1 Consensus size: 63
406 GCCGAGAGTT
*
416 GGGTGCGGGGTCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
479 -GGTGCGGGGGCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
540 GGGTGCGGG
1 GGGTGCGGG
549 AGTGCCGCAC
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
61 47 0.69
62 21 0.31
ACGTcount: A:0.14, C:0.40, G:0.36, T:0.11
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:561 original size:156 final size:156
Alignment explanation
Indices: 337--620 Score: 448
Period size: 156 Copynumber: 1.8 Consensus size: 156
327 GGGTGTCTCG
* * *
337 GTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCCGGA
1 GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
* *
402 CAGAGCCGAGAGTTGGGTGCG-G-GGTCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCG
66 CAGAACCGAGAGTT-GGTGCGTGAGG--CTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCG
464 GCAACCCCAGGCCACGGTGCGGGGGCCTC
128 GCAACCCCAGGCCACGGTGCGGGGGCCTC
493 GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
1 GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
* * *
558 CAGAACCGAGCGTTGGTGCGTGAGGCTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGG
66 CAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCGG
621 TCACCATTGG
Statistics
Matches: 117, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
155 33 0.28
156 82 0.70
157 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (156 bp):
GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCA
CAGAACCGAGAGTTGGTGCGTGAGGCTCGGTCACCATCGGCAACCCCAGACGGGTGGCCTCGGCA
ACCCCAGGCCACGGTGCGGGGGCCTC
Found at i:681 original size:31 final size:32
Alignment explanation
Indices: 583--715 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
573 GTGCGTGAGG
* *
583 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* * *
616 CTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
648 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
679 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
711 CTCGG
1 CTCGG
716 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 29 0.33
32 34 0.38
33 26 0.29
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:707 original size:63 final size:65
Alignment explanation
Indices: 583--715 Score: 180
Period size: 63 Copynumber: 2.1 Consensus size: 65
573 GTGCGTGAGG
* * * * *
583 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
* * *
648 CTCGGTCACCATCGGCAAACCCAGAC-GGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
711 CTCGG
1 CTCGG
716 CAACCCCAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 33 0.55
64 3 0.05
65 24 0.40
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (65 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:815 original size:93 final size:94
Alignment explanation
Indices: 479--862 Score: 304
Period size: 93 Copynumber: 4.1 Consensus size: 94
469 CCCAGGCCAC
*
479 GGTGCGGGGGCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCC-ACGGGTGCCTCGGCAACCCCAGGCCACGGG
* *
543 TGCGGGAGTGCCGCACAGAACCGAGCG-TT
65 TGCGGGAGTGCCGCACAGAACCGAGAGCTG
* * *** *
572 GGTGCGTGAGG-CTCGGTCACCATCGGCAA-TCCCAGGCGGGTGGCCTCGGTC-ACCATTGGCAA
1 GGTGCG-GGGGCCTCGGTCACCATCGGCAACACCCA--CGGGT-GCCTCGG-CAACCCCAGGCCA
* *** * * * * * **
634 AGCCAGACGGGTGT-CTCGGTCAC-CATCGGCA-AACCC
61 CGGGTG-CGGGAGTGC-C-G-CACAGAACCG-AGAGCTG
* * * * *
670 AG-AC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGG
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCC-ACGGGTGCCTCGGCAACCCCAGGCCACGGG
* *
733 TGCGGGAGTGCCGCACAGAGCCGAGAGTTG
65 TGCGGGAGTGCCGCACAGAACCGAGAGCTG
* **
763 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCC-CGGGTGCCTCGGCAACCCCAGTCCATTGGT
1 GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCACGGGTGCCTCGGCAACCCCAGGCCACGGGT
*
827 GCGGGAGTGCCGCACAGAACCGAGCGCTG
66 GCGGGAGTGCCGCACAGAACCGAGAGCTG
856 GGTGCGG
1 GGTGCGG
863 CAGCCTCGCA
Statistics
Matches: 220, Mismatches: 50, Indels: 42
0.71 0.16 0.13
Matches are distributed among these distances:
92 5 0.02
93 78 0.35
94 31 0.14
95 61 0.28
96 31 0.14
97 8 0.04
98 6 0.03
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (94 bp):
GGTGCGGGGGCCTCGGTCACCATCGGCAACACCCACGGGTGCCTCGGCAACCCCAGGCCACGGGT
GCGGGAGTGCCGCACAGAACCGAGAGCTG
Found at i:9006 original size:32 final size:29
Alignment explanation
Indices: 8970--9053 Score: 80
Period size: 31 Copynumber: 2.8 Consensus size: 29
8960 GCGTGAGCCC
*
8970 CGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGTCACCATCGGCAAACCCAGGCGGGT---CT
* **
9002 CGTCACCATC-GCAAAACCATACGGGTCT
1 CGTCACCATCGGCAAACCCAGGCGGGTCT
*
9030 CGGTCACCATCGGCAACCCCAGGC
1 C-GTCACCATCGGCAAACCCAGGC
9054 CATTGGTGAG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
28 3 0.07
29 9 0.21
30 8 0.19
31 12 0.29
32 10 0.24
ACGTcount: A:0.21, C:0.39, G:0.25, T:0.14
Consensus pattern (29 bp):
CGTCACCATCGGCAAACCCAGGCGGGTCT
Found at i:9195 original size:31 final size:32
Alignment explanation
Indices: 9100--9229 Score: 178
Period size: 31 Copynumber: 4.2 Consensus size: 32
9090 GTGCGTGAGG
* *
9100 CTCGGTCACCATCGGC-AACCCAGGC-GGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
9131 CTC-GTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9162 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* * *
9193 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
9225 CTCGG
1 CTCGG
9230 CAACCCCAGG
Statistics
Matches: 90, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
30 12 0.13
31 44 0.49
32 34 0.38
ACGTcount: A:0.18, C:0.38, G:0.29, T:0.15
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:9202 original size:63 final size:62
Alignment explanation
Indices: 9098--9229 Score: 194
Period size: 63 Copynumber: 2.1 Consensus size: 62
9088 TGGTGCGTGA
*
9098 GGCTCGGTCACCATCGGCAACCCAGGCGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGT
* * * *
9160 GTCTCGGTCACCATCGGCAAACCCAGACGGT-GTCTCGGTCACCATCGGCAACCCCCGACGGGT
1 GGCTCGGTCACCATCGGC-AACCCAGACGGTGGCCTC-GTCACCATCGGCAAACCCAGACGGGT
9223 GGCTCGG
1 GGCTCGG
9230 CAACCCCAGG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
62 21 0.34
63 41 0.66
ACGTcount: A:0.18, C:0.37, G:0.30, T:0.14
Consensus pattern (62 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGT
Found at i:9360 original size:62 final size:62
Alignment explanation
Indices: 9275--9405 Score: 223
Period size: 62 Copynumber: 2.1 Consensus size: 62
9265 GCCGAGAGTT
*
9275 GGGTGC-GGGTCCTCGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
9335 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTC-GTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
9398 -GGTGCGGG
1 GGGTGCGGG
9406 AGTGCCGCAC
Statistics
Matches: 67, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
60 6 0.09
61 7 0.10
62 30 0.45
63 24 0.36
ACGTcount: A:0.14, C:0.40, G:0.35, T:0.11
Consensus pattern (62 bp):
GGGTGCGGGGGCCTCGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:9488 original size:32 final size:31
Alignment explanation
Indices: 9443--9568 Score: 146
Period size: 32 Copynumber: 4.0 Consensus size: 31
9433 CGTGAGGCTC
* *
9443 GTCACCATCGGCAATCCCAGGCGGTGGCCTCG
1 GTCACCATCGGCAAACCCAGACGG-GGCCTCG
* * *
9475 GTCACCATTGGCAAAGCCAGAC-GGGTCTCG
1 GTCACCATCGGCAAACCCAGACGGGGCCTCG
*
9505 GTCACCATCGGCAAACCCAGACGGGTGTCTCG
1 GTCACCATCGGCAAACCCAGACGGG-GCCTCG
* * *
9537 GTCACCATCGGCAACCCCCGACGGTGCCTCG
1 GTCACCATCGGCAAACCCAGACGGGGCCTCG
9568 G
1 G
9569 CAACCCCAGG
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
30 26 0.32
31 9 0.11
32 46 0.57
ACGTcount: A:0.19, C:0.37, G:0.29, T:0.15
Consensus pattern (31 bp):
GTCACCATCGGCAAACCCAGACGGGGCCTCG
Found at i:9505 original size:154 final size:154
Alignment explanation
Indices: 9130--9537 Score: 479
Period size: 154 Copynumber: 2.6 Consensus size: 154
9120 CAGGCGGTGG
* * *
9130 CCTCGTCACCATCGGCAAACCCAGACGG-GTGTCTCGGTCACCATCGGCAAACCCAGACGGTGTC
1 CCTCGTCACCATCGGCAAACCCAGACGGTG-GCCTCGGTCACCATAGGCAAAGCCAGACGG-GTC
* *
9194 TCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAACCCCAGGCCACGGGTGCGGGAGTTCC
64 TCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
*
9259 GACAGAGCCGAGAGTTGGGTGCGGGT
129 GACAGAACCGAGAGTTGGGTGCGGGT
* * ** * * *** *
9285 CCTCGTCACCATCGGCAACCCCCGACGGT-GCCTCGG-CAACCCCAGGCCACGGGTG-CGGGGGC
1 CCTCGTCACCATCGGCAAACCCAGACGGTGGCCTCGGTC-ACCATAGGCAAAGCCAGAC--GGGT
9347 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC-GGTGCGGGAGTGC
63 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
*
9411 CGCACAGAACCGAGCGTT-GGTGCGTGAG-
128 CG-ACAGAACCGAGAGTTGGGTGCG-G-GT
* * * *
9439 GCTCGTCACCATCGGCAATCCCAGGCGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTCTC
1 CCTCGTCACCATCGGCAAACCCAGACGGTGGCCTCGGTCACCATAGGCAAAGCCAGACGGGTCTC
* * *
9504 GGTCACCATCGGCAAACCCAGACGGGTGTCTCGG
66 GGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
9538 TCACCATCGG
Statistics
Matches: 210, Mismatches: 33, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
153 22 0.10
154 141 0.67
155 45 0.21
156 2 0.01
ACGTcount: A:0.18, C:0.36, G:0.33, T:0.13
Consensus pattern (154 bp):
CCTCGTCACCATCGGCAAACCCAGACGGTGGCCTCGGTCACCATAGGCAAAGCCAGACGGGTCTC
GGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGA
CAGAACCGAGAGTTGGGTGCGGGT
Found at i:9560 original size:62 final size:62
Alignment explanation
Indices: 9443--9560 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 62
9433 CGTGAGGCTC
* * * *
9443 GTCACCATCGGCAATCCCAGGCGGTGGCCTCGGTCACCATTGGCAAAGCCAGACGGGTCTCG
1 GTCACCATCGGCAAACCCAGACGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCG
* * *
9505 GTCACCATCGGCAAACCCAGACGG-GTGTCTCGGTCACCATCGGCAACCCCCGACGG
1 GTCACCATCGGCAAACCCAGACGGTG-GCCTCGGTCACCATCGGCAAACCCAGACGG
9561 TGCCTCGGCA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
61 1 0.02
62 47 0.98
ACGTcount: A:0.20, C:0.36, G:0.29, T:0.14
Consensus pattern (62 bp):
GTCACCATCGGCAAACCCAGACGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTCTCG
Found at i:9683 original size:340 final size:341
Alignment explanation
Indices: 9039--9683 Score: 1104
Period size: 340 Copynumber: 1.9 Consensus size: 341
9029 TCGGTCACCA
*
9039 TCGGCAACCCCAGGCCATTGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCATCGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
9104 GTCACCATCGGCAACCCAGGCGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
66 GTCACCATCGGCAACCCAGGCGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
*
9169 ACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGGCTCGGCAAC
131 ACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAAC
* *
9234 CCCAGGCCACGGGTGCGGGAGTTCCGACAGAGCCGAGAGTTGGGTGCGGGTCCTCGTCACCATCG
196 CCCAGGCCACGGGTGCGGGAGTGCCGACAGAGCCGAGAGTTGGGTGCGGGGCCTCGTCACCATCG
*
9299 GCAACCCCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCATCGGCA
261 GCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCATCGGCA
9364 ACCCCCGACGGGTGCC
326 ACCCCCGACGGGTGCC
*
9380 TCGGCAACCCCAGGCCA-CGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTC-
1 TCGGCAACCCCAGGCCATCGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
* *
9443 GTCACCATCGGCAATCCCAGGCGGTGGCCTCGGTCACCATTGGCAAAGCCAGAC-GG-GTCTCGG
66 GTCACCATCGGCAA-CCCAGGCGGTGGCCTC-GTCACCATCGGCAAACCCAGACGGGTGTCTCGG
9506 TCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCGAC-GGTGCCTCGGC
129 TCACCATCGGCAAACCCAGAC-GGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGC
9570 AACCCCAGGCCAC-GGTGCGGGAGTGCCGCACAGAGCCGAGAGTTGGGTGCGGGGCCTCGTCACC
193 AACCCCAGGCCACGGGTGCGGGAGTGCCG-ACAGAGCCGAGAGTTGGGTGCGGGGCCTCGTCACC
* **
9634 ATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGG
257 ATCGGCAACACCCGAC-GGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG
9684 AGTGCCGCAC
Statistics
Matches: 288, Mismatches: 11, Indels: 11
0.93 0.04 0.04
Matches are distributed among these distances:
338 14 0.05
339 114 0.40
340 123 0.43
341 37 0.13
ACGTcount: A:0.18, C:0.35, G:0.33, T:0.13
Consensus pattern (341 bp):
TCGGCAACCCCAGGCCATCGGTGAGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAACCCAGGCGGTGGCCTCGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTC
ACCATCGGCAAACCCAGACGGTGTCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAAC
CCCAGGCCACGGGTGCGGGAGTGCCGACAGAGCCGAGAGTTGGGTGCGGGGCCTCGTCACCATCG
GCAACACCCGACGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGGGCCTCGGTCACCATCGGCA
ACCCCCGACGGGTGCC
Done.