genome.fa.s954.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000954.1 Hibiscus syriacus cultivar Beakdansim tig00001910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93437

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12004--12277	69	4.0	67	86	8	363	43	13	12	31	1.80
14693--14749	30	1.9	29	82	10	71	47	12	14	26	1.79
17995--18039	21	2.1	21	87	0	63	31	28	24	15	1.96
18673--18719	23	2.0	24	91	4	78	44	0	21	34	1.52
18897--19050	31	5.0	31	93	1	256	22	20	20	37	1.95
22036--22080	21	2.1	21	87	0	63	31	28	24	15	1.96
22945--23098	31	5.0	31	93	1	256	22	20	20	37	1.95
23861--23926	32	2.1	32	100	0	132	25	37	18	18	1.93
27788--27820	16	2.1	16	94	0	57	60	21	12	6	1.53
27886--27960	10	7.7	10	69	21	61	57	21	12	9	1.62
27890--27954	16	4.1	16	95	0	121	56	23	12	7	1.61
28705--28760	14	4.3	14	76	17	66	53	23	12	10	1.69
28685--28759	24	3.1	24	86	3	98	56	20	10	13	1.66
40468--40542	36	2.1	36	85	9	100	48	1	4	46	1.29
42429--42460	2	16.0	2	100	0	64	50	0	0	50	1.00
44282--44343	9	7.1	8	77	14	52	77	3	3	16	1.03
44437--44463	14	1.9	14	100	0	54	74	3	7	14	1.18
45889--46072	38	5.0	37	81	12	216	44	5	4	45	1.50
45864--46074	38	5.7	36	80	12	209	42	5	4	47	1.47
46133--46187	2	28.0	2	88	3	85	49	0	3	47	1.19
46554--46590	14	2.6	15	83	8	51	59	0	2	37	1.12
46551--46612	15	4.5	14	70	24	51	61	0	1	37	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46767--46811	19	2.3	20	82	17	60	33	11	2	53	1.49
48285--48309	3	8.3	3	100	0	50	68	32	0	0	0.90
55850--55927	33	2.5	32	81	8	88	33	21	12	32	1.91
64143--64213	35	2.0	35	81	10	83	47	2	0	49	1.16
65865--65958	31	3.0	31	84	0	134	34	10	14	40	1.81
65919--66061	71	2.0	71	89	2	216	35	10	10	43	1.74
68500--68543	5	8.8	5	100	0	88	40	0	0	59	0.98
68956--69053	39	2.5	39	91	0	151	27	14	30	27	1.95
75019--75062	20	2.2	20	95	0	79	36	0	0	63	0.95
75003--75201	15	12.5	15	77	17	188	43	0	3	53	1.16
75003--75202	79	2.5	80	85	4	251	43	0	3	53	1.16
75163--75219	18	3.4	18	69	18	59	33	0	12	54	1.38
75149--75614	32	15.4	32	72	16	286	33	0	12	53	1.41
75204--75246	22	2.0	22	100	0	86	34	0	13	51	1.42
75172--75631	54	8.3	54	69	13	290	32	0	13	53	1.42
75177--75614	170	2.6	167	89	3	632	32	0	13	53	1.41
75370--75412	22	2.0	22	100	0	86	34	0	13	51	1.42
75401--75454	14	3.6	14	72	18	54	37	0	5	57	1.22
75464--75550	22	3.8	22	79	11	111	32	0	16	51	1.44
75262--75662	134	3.0	134	87	7	537	32	0	13	53	1.43
75344--75703	112	3.2	110	77	10	399	32	0	13	53	1.42
75641--75704	32	2.0	32	96	0	119	35	0	10	53	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75719--75777	31	1.9	31	96	0	109	42	8	6	42	1.61
76640--76697	30	2.0	27	83	9	71	41	3	1	53	1.28
76724--76793	21	3.3	20	71	20	54	41	4	1	52	1.30
79553--79604	23	2.2	23	93	3	86	30	32	15	21	1.94
79729--79788	31	1.9	31	89	0	93	43	5	6	45	1.52
79811--80269	22	20.6	22	80	10	443	49	9	0	40	1.41
79811--80269	44	10.3	44	85	7	588	49	9	0	40	1.41
79811--80269	66	6.9	66	83	7	586	49	9	0	40	1.41
79989--80048	30	2.0	30	96	0	111	56	8	0	35	1.29
82273--82312	20	2.0	20	90	0	62	22	22	10	45	1.82

Tables:   1

The End!