Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009543.1 Hibiscus syriacus cultivar Beakdansim tig00116394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6935
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Found at i:803 original size:294 final size:299
Alignment explanation
Indices: 2--6935 Score: 10735
Period size: 294 Copynumber: 23.7 Consensus size: 299
1 A
2 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
67 TACGTGTG-GTGTGTTCGAGATAGAAT-AAAA-AAAATAATCCGAAAAATAGGGGTGCAACACGA
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGA
129 GGACTTCCCAGGAGGTCA-CCATCCTAGTACTA--CTCGCCCAAGCCACGCTTAACTGCGGAGTT
128 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG-CACGCTTAAC-GCGGAGTT
*
191 CTGA-GGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CCGTCATGCCTTGCGCCCGTAATTTA
191 CTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTA
*
254 -TTAAGGCGTTCGTTTTCTTCCAG-CCGCAC-TAAGGGAGTCGC
256 TTTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
295 AAAATTCGGATTCTACG-CCCGAACCTTTCT-CCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
358 TA------CGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAATA-GGGTGCAACACGA
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGA
416 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
128 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
*
481 TGATGGTATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA-TTAT
192 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
545 TTAAGGCGTTTCGTTTTCTT-CGGCCC-CACTTAAGGGAGTCGC
257 TTAAGGCG-TTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
587 AAAATTCGGATTCTACG-CCCGAACCTTTCTCCCCAAGTACCCCACT-C-CAGGCGGAATACGTA
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCGCAGGCGGAATACGTA
*
649 CGTGTGCGTGTGTTCGAGATAG-ATAAAAAGAAAATAATCCGAAAAAGAGGGGGGCAAACACGAG
66 CGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGC-AACACGAG
713 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA-GCGGAGTTCTG
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACGCGGAGTTCTG
777 ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CCGTCATGCCTTGCG-CCTTAA-TTATTT
194 ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTT
*
839 AAGGCG-TCG-TTTCTT----CCCACACTTAAAGGGAGTCGC
259 AAGGCGTTCGTTTTCTTCCGGCCCGCACTT-AAGGGAGTCGC
875 -AAATTCGGATTCTACG--CCGAACC-TTCT-CCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
935 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAG-AAATAATCCGAAAAAAGAGGGGTGCAACACG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCG-AAAAA-AGGGGTGCAACACG
*
999 AGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTTACTGCGGAGTT
127 AGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTT
*
1064 CTGATGGAATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTT--GCCCTTAATTTA
191 CTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTA
*
1127 TTTAAGGCGTTCG-TTTCTT--AG-CCGCACTTAA-GGAGTCGC
256 TTTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
1166 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
1231 TA-GTGTGC------TCGAGATAGAAT-AAAA-AAAATAATCCGAAAAAAATAGGGGTTGCAACA
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCG--AAAAA-AGGGG-TGCAACA
1287 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTA-TACTCTCGCCCAAGCACGCTTAACTGCGGA-
125 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAG
1350 TTCTGATGGGATCCGGTGCATTA-TGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATT
189 TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATT
1414 TATTTAAGGCGTTCGTTTTCTTTCC-GCCCGCACTTAAGGGAGTCGC
254 TATTTAAGGCGTTCGTTTTC-TTCCGGCCCGCACTTAAGGGAGTCGC
1460 -AAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTA-CCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
1523 TACGTGTG-GTGTGTTCGAGATAGAATAAAAAGAAAATAAT-CGAAAAAA-GGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
1585 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC-G-GTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
1648 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
* *
1713 TAAGGCGTTTGTTTTCTTCCGGCCCACA-TTAAGGGAGTCGC
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
1754 -AAATTCGGATTCTACG-CCCGAACC-TTCTCCCCAAGTA-CCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
*
1815 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAG-AAATAATCCAAAAAAGAGGGGTGCAACAC-A
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGA
1878 GGACTTCCCAGGAGGTCA-CCATCCTAGTACTA--CTCGCCCAAGCACGCTTAACTGCGGAGTTC
128 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
1940 TGATGGGATCCGGTGCA-TAGTGCTGGTATGATCGCA-CCGTCATG-CTTGCGCCCTTAATTTA-
192 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
* * *
2001 TTAAGGCGTTCGTTTTCTTACGGCCCACACTTAAGGGACTCGC
257 TTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
**
2044 AAAATTCATATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
2109 TACGTGT--GTGTGTTCGAGATAGAATAAAAAG-AAATAATCCGAAAAATAGGGGTGCAACACGA
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGA
2171 GGACTT-CCAGGA-GTCACCCATCCTAGTACTACTCTCGCCCAAGC-CGCTT-ACTGCGGAGTTC
128 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
2232 TGAT-GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTT-T
192 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
* *
2295 TTAAGGCGTT--TGTTCTT-CGG-CCGCACTAAAGGGAGTCGC
257 TTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
*
2334 AAAATTCGGATTCTACGCCCCGAACC-TT-TCCCCAAGTACCCCACTCAGGCA-G-GGAAT--GT
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTC-CGCAGGCGGAATACGT
*
2393 ACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCG-AAAAAGAGGTGCAACACGAGG
65 ACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGG
2457 ACTTCCCAGGAGGTCACCCATCCTAGTA-TACTCTCGCCCAAGCACGCTT-ACTGCGGAGTTCTG
130 ACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCTG
*
2520 ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CCGTC-TG-CTTGTGCCCTTAATTTATTT
194 ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTT
* * *
2582 AAGGCGTTCGTTTTCTTACGGCCC-CACTTAAGGGACTCGT
259 AAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
** *
2622 AAAATTCATATTCTACGACCCGAACCTTTCT-CCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
* *
2686 TAAGTGT--GTGTGTTCGATATAGAATAAAAAGAAAATAATCCGAAAAATAGGGGTGCAACACGA
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGA
2749 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
128 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
2814 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTA-
192 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
*
2878 TTAAGGCGTTCGTTTTCTT-CGGCCCGCACTAAAGGGAGTCGC
257 TTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
2920 AAAATTCGGATTCTACGCCCCGAACCTTTCT-CCCAAGTA-CCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
2983 TACGTGTGCGTGTGTGTTCGAGATAGAAT-AAAAGAAAATAATCCGAAAAAGAGGGGTGCAACAC
64 TACGTGTGC--GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACAC
*
3047 GAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC---TT
126 GAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGT
3109 TCTG--GGGATCC-GTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTT
190 TCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTT
*
3171 ATTTAAGGCGTTTGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
255 ATTTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
3216 -AAATTCGGATTCTACGCCCCGAACCTTTCTCCCC-AGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
3279 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAG--AATAATCCGAAAAAA--GGTGCAACAC-AG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
3339 GACTTCCCAGGA-GTCACCCATCCTAGTACTACTCTCGCCC-A-CACGC-TAACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
3400 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CCGTCATGCCTTGCGCCCTTAATTTATT
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
* * * *
3464 TAAGGCGTTCGTTTTCTTACGGCCCACACTTAAGGGACTCGT
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
** * *
3506 AAAATTCATATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCATGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
*
3571 TACGTGT--GTGTGTTCGATATAGAATAAAAAGAAAATAATCCGAAAAATAGGGGTGCAACACGA
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGA
3634 GGACTTCCCA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
128 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
3698 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
192 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
* *
3763 TAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGC
257 TTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
3806 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
3871 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAG--AA-AATCCG-AAAAAGGGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
*
3932 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCCA--ACGCTTAACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
3995 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTT--GCCCTTAATTTATT
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
*
4058 TAAGGCGTTCGTTTTCTT-CGGCCCACACTTAA-GG-GTCGC
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
*
4097 AAAATTC--ATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
*
4160 TACGTGTGTGTGT-TTCGAGATAGAAT-AAAA-AAAATAATCCG-AAAAAGGGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
4221 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
4286 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCC-TAATTTA-T
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
4349 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAA-GGAGTCGC
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
4390 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCC-CT-C-CAGGCAGGCAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCGCAGGC-GG-AATACG
4452 TACGTGTGC--GTGTTCGAGATAGAATAAAAAGAAAATAATCCG-AAAAA-GGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
4513 GACTTCCCAGGA-GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
4577 GATGGGATCC-G-GCATTAGTGCTGGTATGATCGCACCCGTCATG-CTTGCG-CCTTAATTT-TT
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
* *
4637 TAAGGCGTTCGTTTTCTTACGGCCCACACTTAAGGGAGTCGC
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
**
4679 AAAATTCATATTCTACG-CCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGG-A-ACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
4741 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAG-AAATAATCCGAAAAATAGGGGTGCAACACGA
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGA
4805 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCC-A--A-GCTTAACTGCGGAGTTC
128 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
4866 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CC--CATGCCTTGCGCCCTTAATTT-T
192 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
4927 TTAAGGCGTTTCGTTTTTCTT-CGG-CC-CACTTAAGGGAGTCGC
257 TTAAGGCG-TTCG-TTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
4969 AAAATTC--ATTCTACG-CCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGG-ATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
5030 TACGTGT--GTGTGTTCGAGATAGAAT-AAAAGAAAATAATCCG-AAAAAGGGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
5091 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-ACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
5155 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
*
5220 TAAGGCGTTCGTTTT-TTTCGGCCC-CACTTAAGGGA-TCGC
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
5259 -AAATTC-GATTCTACGCCCCGAACCTTTCTCCCCAAGTA-CCC-CTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
5320 TAC-TGT--GTGTGTTC--GATAGAAT--AAA-AAAATAATCCG-AAAAAGAGGGTGCAACACGA
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAG-GGGTGCAACACGA
5376 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
128 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
5441 TGATGGGATCC-GTGCATTAGTGCT-GTATGATCGCACCCGTCATGCCTTGCG-CCTTAATTTAT
192 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
*
5503 TTAAGGCGTTCGTTTTCTTCCGGCCCACACTTAAGGGAGTCG-
257 TTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
5545 AAAATTCGGATTCTACG-CCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
5609 TACGTGT--GT-TGTTCGAGATAGAATAAAAAGAAAATAATCCG-AAAAAGGGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
5670 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
5735 GATGGGATCC-GTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTT--GCCCTTAATTTATT
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
5797 TAAGGCGTTCGTTTTCTTCCGGCCCGCAC-TAAGGGAGTCGC
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
5838 AAAA-TCGGATTCTA---CCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
5899 TAC--GTGCGTGTGTTCGAGATAGAATAAAAAG-AAATAATCCG-AAAAAGGGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
5960 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
6025 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
*
6090 TAAGGCGTTTGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
6132 -AAATTCGGATTCTACGCCCCGAACC-TT-TCCCCAAGTA-CCCACTCCAGGCAGGC-GAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
6192 TACGTGTGCGTGTGTTCGAGATAGAAT-AAAAGAAAATAATCCG-AAAAAGGGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
6255 GACTT-CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
6319 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTA-T
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
6383 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAA-GGAGTCGC
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
6424 -AAATTC--ATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
*
6486 TACGTGTGCGTGTGTTCGAGATAGAATAAAAA-AAAATAATCCGAAAAGA-GGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
6549 GACTT-CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
6613 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTA-T
193 GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
*
6677 TAAGGCGTTTGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
258 TAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
6719 AAAATTCGGATT-TACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGC-GAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCC--GCAGGCGGAATACG
6782 TACGTGTGCGTGTG-TCGAGATAGAAT-AAAA-AAAATAATCCGAAAAAAGGGGTGCAACACGAG
64 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAG
6844 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT
129 GACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTCT
6909 GAT-GGATCCGGTGCATTAGTGCTGGTA
193 GATGGGATCCGGTGCATTAGTGCTGGTA
Statistics
Matches: 6302, Mismatches: 99, Indels: 478
0.92 0.01 0.07
Matches are distributed among these distances:
283 8 0.00
284 77 0.01
285 188 0.03
286 188 0.03
287 223 0.04
288 475 0.08
289 491 0.08
290 607 0.10
291 580 0.09
292 578 0.09
293 570 0.09
294 897 0.14
295 407 0.06
296 403 0.06
297 129 0.02
298 126 0.02
299 79 0.01
300 236 0.04
301 17 0.00
302 23 0.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (299 bp):
AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCGCAGGCGGAATACGTA
CGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGA
CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACGCGGAGTTCTGAT
GGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAA
GGCGTTCGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC
Found at i:1224 original size:584 final size:598
Alignment explanation
Indices: 2--6935 Score: 10997
Period size: 584 Copynumber: 11.9 Consensus size: 598
1 A
2 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
*
67 TACGTGTG-GTGTGTTCGAGATAGAAT-AAAA-AAAATAATCCGAAAAATAGGGGTGCAACACGA
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
129 GGACTTCCCAGGAGGTCA-CCATCCTAGTACTA--CTCGCCCAAGCCACGCTTAACTGCGGAGTT
131 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG-CACGCTTAAC-GCGGAGTT
*
191 CTGA-GGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CCGTCATGCCTTGCGCCCGTAATTTA
194 CTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTA
254 -TTAAGGCGTTCGTTTTCTTCCAGCCGCAC-TAAGGGAGTCGCAAAATTCGGATTCTACGCCCGA
259 TTTAAGGCGTTCGTTTTCTTCC--CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGCCCGA
317 ACCTTTCT-CCCAAGTACCCCACTCCAGGCAGGCGGAATACGTA------CGTGTGTTCGAGATA
322 ACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATA
375 GAATAAAAAGAAAATAATCCGAAAAATA-GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
387 GAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
*
439 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGTATCCGGTGCATTAGTG
451 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
504 CTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA-TTATTTAAGGCGTTTCGTTTTCTTCGG
516 CTGGTATGATCGCACCCGTCATGCCTT-CGCCCTTAATTTATTTAAGGCG-TTCGTTTTCTTCGG
568 CCC-CACTTAAGGGAGTCGC
579 CCCGCACTTAAGGGAGTCGC
587 AAAATTCGGATTCTACG-CCCGAACCTTTCTCCCCAAGTACCCCACT-C---CAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
*
647 TACGTGTGCGTGTGTTCGAGATAG-ATAAAAAGAAAATAATCCGAAAAAGAGGGGGGCAAACACG
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGC-AACACG
711 AGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA-GCGGAGTTC
130 AGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACGCGGAGTTC
775 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CCGTCATGCCTTGCG-CCTTAA-TTAT
195 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
*
837 TTAAGGCG-TCG-TTTCTT-CCCACACTTAAAGGGAGTCGC-AAATTCGGATTCTACG-CCGAAC
260 TTAAGGCGTTCGTTTTCTTCCCCGCACTT-AAGGGAGTCGCAAAATTCGGATTCTACGCCCGAAC
897 C-TTCT-CCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGA
324 CTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGA
960 ATAAAAAG-AAATAATCCGAAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
389 ATAAAAAGAAAATAATCCG-AAAAA-AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* *
1024 CTAGTACTACTCTCGCCCAAGCACGCTTTACTGCGGAGTTCTGATGGAATCCGGTGCATTAGTGC
452 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
*
1089 TGGTATGATCGCACCCGTCATGCCTT-GCCCTTAATTTATTTAAGGCGTTCG-TTTCTT-AG-CC
517 TGGTATGATCGCACCCGTCATGCCTTCGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCGGCCC
1150 GCACTTAA-GGAGTCGC
582 GCACTTAAGGGAGTCGC
1166 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
*
1231 TA-GTGTGC------TCGAGATAGAAT-AAAA-AAAATAATCCGAAAAAAATAGGGGTTGCAACA
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCG--AAAAAGAGGGG-TGCAACA
1287 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTA-TACTCTCGCCCAAGCACGCTTAACTGCGGA-
128 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAG
1350 TTCTGATGGGATCCGGTGCATTA-TGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATT
192 TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATT
1414 TATTTAAGGCGTTCGTTTTCTTTCCGCCCGCACTTAAGGGAGTCGC-AAATTCGGATTCTACGCC
257 TATTTAAGGCGTTCGTTTTC-TT-C-CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACG-C
1478 CCGAACCTTTCTCCCCAAGTA-CCCACTCCAGGCAGGCGGAATACGTACGTGTG-GTGTGTTCGA
318 CCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGA
1541 GATAGAATAAAAAGAAAATAAT-CGAAAAAA-GGGTGCAACACGAGGACTTCCCAGGAGGTCACC
383 GATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
1604 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC-G-GTTCTGATGGGATCCGGTGCATTA
448 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
*
1667 GTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCGTTTGTTTTCTTC
513 GTGCTGGTATGATCGCACCCGTCATGCCTT-CGCCCTTAATTTATTTAAGGCGTTCGTTTTCTT-
*
1732 CGGCCCACA-TTAAGGGAGTCGC
576 CGGCCCGCACTTAAGGGAGTCGC
1754 -AAATTCGGATTCTACG-CCCGAACC-TTCTCCCCAAGTA-CCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
*
1815 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAG-AAATAATCCAAAAAAGAGGGGTGCAACAC-A
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
1878 GGACTTCCCAGGAGGTCA-CCATCCTAGTACTA--CTCGCCCAAGCACGCTTAACTGCGGAGTTC
131 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
1940 TGATGGGATCCGGTGCA-TAGTGCTGGTATGATCGCA-CCGTCATG-CTTGCGCCCTTAATTTA-
195 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
* * **
2001 TTAAGGCGTTCGTTTTCTTACGGCCCACACTTAAGGGACTCGCAAAATTCATATTCTACGCCCCG
260 TTAAGGCGTTCGTTTTCTT-C--CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACG-CCCG
2066 AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGT--GTGTGTTCGAGAT
321 AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGAT
2129 AGAATAAAAAG-AAATAATCCGAAAAATAGGGGTGCAACACGAGGACTT-CCAGGA-GTCACCCA
386 AGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
2191 TCCTAGTACTACTCTCGCCCAAGC-CGCTT-ACTGCGGAGTTCTGAT-GGATCCGGTGCATTAGT
450 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
2253 GCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTT-TTTAAGGCGTT--TGTTCTTCGG
515 GCTGGTATGATCGCACCCGTCATGCCTT-CGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCGG
*
2315 -CCGCACTAAAGGGAGTCGC
579 CCCGCACTTAAGGGAGTCGC
2334 AAAATTCGGATTCTACGCCCCGAACC-TT-TCCCCAAGTACCCCACT-CAGGCA-G-GGAAT--G
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
2392 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGA--GGTGCAACACGA
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
2455 GGACTTCCCAGGAGGTCACCCATCCTAGTA-TACTCTCGCCCAAGCACGCTT-ACTGCGGAGTTC
131 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
*
2518 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CCGTC-TG-CTTGTGCCCTTAATTTAT
195 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
* * **
2580 TTAAGGCGTTCGTTTTCTTACGGCCC-CACTTAAGGGACTCGTAAAATTCATATTCTACGACCCG
260 TTAAGGCGTTCGTTTTCTT-C--CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACG-CCCG
* *
2644 AACCTTTCT-CCCAAGTACCCCACTCCAGGCAGGCGGAATACGTAAGTGT--GTGTGTTCGATAT
321 AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGAT
2706 AGAATAAAAAGAAAATAATCCGAAAAATAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
386 AGAATAAAAAGAAAATAATCCGAAAAA-AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
2771 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
450 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
2836 GCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCGG
515 GCTGGTATGATCGCACCCGTCATGCCTT-CGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCGG
*
2900 CCCGCACTAAAGGGAGTCGC
579 CCCGCACTTAAGGGAGTCGC
2920 AAAATTCGGATTCTACGCCCCGAACCTTTCT-CCCAAGTA-CCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
2983 TACGTGTGCGTGTGTGTTCGAGATAGAAT-AAAAGAAAATAATCCGAAAAAGAGGGGTGCAACAC
66 TACGTGTGC--GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACAC
*
3047 GAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC---TT
129 GAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGT
3109 TCTG--GGGATCC-GTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTT
193 TCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTT
*
3171 ATTTAAGGCGTTTGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC-AAATTCGGATTCTACGCCC
258 ATTTAAGGCGTTCGTTTTCTT-C--CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACG-CC
3235 CGAACCTTTCTCCCC-AGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAG
319 CGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAG
3299 ATAGAATAAAAAG--AATAATCCGAAAAAA--GGTGCAACAC-AGGACTTCCCAGGA-GTCACCC
384 ATAGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
3358 ATCCTAGTACTACTCTCGCCC-A-CACGC-TAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
449 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
3420 TGCTGGTATGATCGCA-CCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTAC
514 TGCTGGTATGATCGCACCCGTCATGCCTT-CGCCCTTAATTTATTTAAGGCGTTCGTTTTCTT-C
* * *
3484 GGCCCACACTTAAGGGACTCGT
577 GGCCCGCACTTAAGGGAGTCGC
** * *
3506 AAAATTCATATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCATGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
* *
3571 TACGTGT--GTGTGTTCGATATAGAATAAAAAGAAAATAATCCGAAAAATAGGGGTGCAACACGA
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
3634 GGACTTCCCA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
131 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
3698 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
195 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
* *
3763 TAAAGGCGTTCGTTTTCTTCCGGCCCGCACTAAAGGGAGTCGCAAAATTCGGATTCTACGCCCCG
260 TTAAGGCGTTCGTTTTCTT-C--CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACG-CCCG
3828 AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGAT
321 AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGAT
3893 AGAATAAAAAG--AA-AATCCG-AAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
386 AGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
*
3954 CCTAGTACTACTCTCGCCCCA--ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
451 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
4017 CTGGTATGATCGCACCCGTCATGCCTT-GCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCGGCC
516 CTGGTATGATCGCACCCGTCATGCCTTCGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCGGCC
*
4081 CACACTTAA-GG-GTCGC
581 CGCACTTAAGGGAGTCGC
*
4097 AAAATTC--ATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
*
4160 TACGTGTGTGTGT-TTCGAGATAGAAT-AAAA-AAAATAATCCG-AAAA-AGGGGTGCAACACGA
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
4220 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
131 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
4285 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCC-TAATTTA-
195 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
4348 TTAAGGCGTTCGTTTTCTTCCGGCCCGCACTTAA-GGAGTCGCAAAATTCGGATTCTACGCCCCG
260 TTAAGGCGTTCGTTTTCTT-C--CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACG-CCCG
4412 AACCTTTCTCCCCAAGTACCCC-CTCCAGGCAGGC--AATACGTACGTGTGC--GTGTTCGAGAT
321 AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGAT
4472 AGAATAAAAAGAAAATAATCCG-AAAAA-GGGTGCAACACGAGGACTTCCCAGGA-GTCACCCAT
386 AGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
4534 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC-G-GCATTAGTG
451 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
4597 CTGGTATGATCGCACCCGTCATG-CTT-GCGCCTTAATTT-TTTAAGGCGTTCGTTTTCTTACGG
516 CTGGTATGATCGCACCCGTCATGCCTTCGC-CCTTAATTTATTTAAGGCGTTCGTTTTCTT-CGG
*
4659 CCCACACTTAAGGGAGTCGC
579 CCCGCACTTAAGGGAGTCGC
**
4679 AAAATTCATATTCTACG-CCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGG-A-ACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
*
4741 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAG-AAATAATCCGAAAAATAGGGGTGCAACACGA
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
4805 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCC-A--A-GCTTAACTGCGGAGTTC
131 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
4866 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CC--CATGCCTTGCGCCCTTAATTT-T
195 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
*
4927 TTAAGGCGTTTCGTTTTTCTTCGGCC-CACTTAAGGGAGTCGCAAAATTC--ATTCTACGCCCGA
260 TTAAGGCG-TTCG-TTTTCTTC-CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGCCCGA
4989 ACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGG-ATACGTACGTGT--GTGTGTTCGAGATA
322 ACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATA
5051 GAAT-AAAAGAAAATAATCCG-AAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
387 GAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
5114 CTAGTACTACTCTCGCCCAAGCACGCTT-ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
452 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
*
5178 TGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCGTTCGTTTTTTTCGGCC
517 TGGTATGATCGCACCCGTCATGCCTT-CGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCGGCC
5243 C-CACTTAAGGGA-TCGC
581 CGCACTTAAGGGAGTCGC
5259 -AAATTC-GATTCTACGCCCCGAACCTTTCTCCCCAAGTA-CCC-CTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
5320 TAC-TGT--GTGTGTTC--GATAGAAT--AAA-AAAATAATCCGAAAAAGA-GGGTGCAACACGA
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
5376 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
131 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
5441 TGATGGGATCC-GTGCATTAGTGCT-GTATGATCGCACCCGTCATGCCTTGCG-CCTTAATTTAT
195 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
*
5503 TTAAGGCGTTCGTTTTCTTCCGGCCCACACTTAAGGGAGTCG-AAAATTCGGATTCTACGCCCGA
260 TTAAGGCGTTCGTTTTCTT-C--CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGCCCGA
5567 ACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGT--GT-TGTTCGAGATA
322 ACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATA
5629 GAATAAAAAGAAAATAATCCG-AAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
387 GAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
5693 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC-GTGCATTAGTGC
452 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
5757 TGGTATGATCGCACCCGTCATGCCTT-GCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCCGGCC
517 TGGTATGATCGCACCCGTCATGCCTTCGCCCTTAATTTATTTAAGGCGTTCGTTTTCTT-CGGCC
5821 CGCAC-TAAGGGAGTCGC
581 CGCACTTAAGGGAGTCGC
5838 AAAA-TCGGATTCTA---CCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
5899 TAC--GTGCGTGTGTTCGAGATAGAATAAAAAG-AAATAATCCG-AAAA-AGGGGTGCAACACGA
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
5959 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
131 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
6024 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
195 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
*
6089 TTAAGGCGTTTGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGC-AAATTCGGATTCTACGCCCCG
260 TTAAGGCGTTCGTTTTCTT-C--CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACG-CCCG
6153 AACC-TT-TCCCCAAGTA-CCCACTCCAGGCAGGC-GAATACGTACGTGTGCGTGTGTTCGAGAT
321 AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGAT
6214 AGAAT-AAAAGAAAATAATCCG-AAAAAGGGGTGCAACACGAGGACTT-CCAGGAGGTCACCCAT
386 AGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
6276 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
451 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
6341 CTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGG
516 CTGGTATGATCGCACCCGTCATGCCTT-CGCCCTTAATTTATTTAAGGCGTTCGTTTTCTT-CGG
6405 CCCGCACTTAA-GGAGTCGC
579 CCCGCACTTAAGGGAGTCGC
6424 -AAATTC--ATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
1 AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
6486 TACGTGTGCGTGTGTTCGAGATAGAATAAAAA-AAAATAATCCG-AAAAGA-GGGTGCAACACGA
66 TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
6548 GGACTT-CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
131 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-GCGGAGTTC
6612 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTA-
195 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTAT
*
6676 TTAAGGCGTTTGTTTTCTTCCGGCCCGCACTTAAGGGAGTCGCAAAATTCGGATT-TACGCCCCG
260 TTAAGGCGTTCGTTTTCTT-C--CCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACG-CCCG
6740 AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGC-GAATACGTACGTGTGCGTGTG-TCGAGAT
321 AACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGAT
6803 AGAAT-AAAA-AAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
386 AGAATAAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
6866 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAT-GGATCCGGTGCATTAGTG
451 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
6930 CTGGTA
516 CTGGTA
Statistics
Matches: 6043, Mismatches: 74, Indels: 460
0.92 0.01 0.07
Matches are distributed among these distances:
571 55 0.01
572 20 0.00
573 11 0.00
574 31 0.01
575 42 0.01
576 85 0.01
577 331 0.05
578 450 0.07
579 462 0.08
580 300 0.05
581 214 0.04
582 232 0.04
583 385 0.06
584 731 0.12
585 539 0.09
586 364 0.06
587 393 0.07
588 293 0.05
589 243 0.04
590 255 0.04
591 88 0.01
592 115 0.02
593 168 0.03
594 123 0.02
595 96 0.02
596 17 0.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (598 bp):
AAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACG
TACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAAGAGGGGTGCAACACGA
GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACGCGGAGTTCT
GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATT
TAAGGCGTTCGTTTTCTTCCCCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGCCCGAACCT
TTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAAT
AAAAAGAAAATAATCCGAAAAAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAG
TACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGT
ATGATCGCACCCGTCATGCCTTCGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCGGCCCGCAC
TTAAGGGAGTCGC
Done.