Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009544.1 Hibiscus syriacus cultivar Beakdansim tig00116396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64615
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Found at i:95 original size:31 final size:32
Alignment explanation
Indices: 60--187 Score: 156
Period size: 31 Copynumber: 4.1 Consensus size: 32
50 CCTGGGGTTG
* *
60 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
91 CCGAGACACCCGTC-GGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
122 -CGAGACACCCGTCTGGCTTTGCCAAT-GTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * * *
152 CCGGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
184 CCGA
1 CCGA
188 CCTCACGCAC
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
30 17 0.20
31 59 0.71
32 7 0.08
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:152 original size:61 final size:62
Alignment explanation
Indices: 61--184 Score: 153
Period size: 61 Copynumber: 2.0 Consensus size: 62
51 CTGGGGTTGC
* * * * *
61 CGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTC-GGGTTTGCCGATGGTGA
1 CGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* * *
122 CGAGACACCCGTCTGGCTTTGCCAAT-GTGACCGGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CGAGACACCCGTC-GGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
184 C
1 C
185 CGACCTCACG
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
61 27 0.51
62 26 0.49
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (62 bp):
CGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:338 original size:64 final size:61
Alignment explanation
Indices: 222--344 Score: 210
Period size: 64 Copynumber: 2.0 Consensus size: 61
212 GTGCGGCACT
222 CCCGCACCCGTGGCCTGGGGTTGCAGGCACCCGTCGGGGGTTGCCGAGGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCAGGCACCCGTCGGGGGTTGCCGAGGGTGACCGAGGCC
*
283 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCAACCCGTCGGGGGTTGCCGATGGTGACCGAGG
1 CCCGCACCCGTGGCCTGGGGTTG-C-AGGC-ACCCGTCGGGGGTTGCCGAGGGTGACCGAGG
345 ACCGCACCCA
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
61 23 0.40
62 1 0.02
63 4 0.07
64 30 0.52
ACGTcount: A:0.11, C:0.33, G:0.42, T:0.14
Consensus pattern (61 bp):
CCCGCACCCGTGGCCTGGGGTTGCAGGCACCCGTCGGGGGTTGCCGAGGGTGACCGAGGCC
Found at i:444 original size:32 final size:32
Alignment explanation
Indices: 400--529 Score: 176
Period size: 32 Copynumber: 4.2 Consensus size: 32
390 CCTGGGGTTG
* *
400 CCGAGCCA-CCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
431 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
463 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* * *
495 CCGAGGC-CACGCCT-GGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
525 CCGAG
1 CCGAG
530 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
30 20 0.22
31 12 0.13
32 59 0.65
ACGTcount: A:0.15, C:0.29, G:0.38, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:475 original size:156 final size:157
Alignment explanation
Indices: 91--506 Score: 442
Period size: 156 Copynumber: 2.7 Consensus size: 157
81 CCGATGGTGA
* * *
91 CCGAGACACCCGTC-GGGTTTGCCGATGGTGA-CGAGACACCCGTCTGGCTTTGCCAAT-GTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *** * *
153 CGGGCCACCCGCCTGGGATTGCCGATGGTGACCGACCTCACGCACCAACGCTCGGTTCTGTGCGG
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGACACGCACCAACGCTCGGCTCTGTCCGG
*
218 CACTCCCGCACCCGTGGCCTGGGGTTG
131 AACTCCCGCACCCGTGGCCTGGGGTTG
* * * * *** * *
245 -C-AGGCACCCGTCGGGGGTTGCCGAGGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * *
305 G-CCGAGGCAACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC-CGCACCCAACTCTCGGCTCTT
63 GACCGAGAC-ACCCGTCTGGGATTGCCGATGGTGACCGAGGACACGCA-CCAACGCTCGGCTC-T
368 GTCCGGAACTCCCGCA-CCGTGGCCTGGGGTTG
125 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
400 CCGAGCCA-CCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* *
464 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACGC
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGACACGC
507 CTGGGTTGCC
Statistics
Matches: 209, Mismatches: 37, Indels: 29
0.76 0.13 0.11
Matches are distributed among these distances:
152 10 0.05
153 21 0.10
154 19 0.09
155 57 0.27
156 82 0.39
157 20 0.10
ACGTcount: A:0.14, C:0.34, G:0.35, T:0.17
Consensus pattern (157 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGACACGCACCAACGCTCGGCTCTGTCCGG
AACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:654 original size:31 final size:31
Alignment explanation
Indices: 576--659 Score: 91
Period size: 31 Copynumber: 2.7 Consensus size: 31
566 CTCACCAATG
*
576 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGA-CGAGACACCC
** * *
608 GTAT-GGTTTGCCGATGGTGACGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACGA-GACACCC
639 GCCTGGGATTG-CGATGGTGAC
1 GCCTGGGATTGCCGATGGTGAC
660 CGGGGCTCAC
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
30 3 0.07
31 33 0.77
32 7 0.16
ACGTcount: A:0.15, C:0.26, G:0.38, T:0.20
Consensus pattern (31 bp):
GCCTGGGATTGCCGATGGTGACGAGACACCC
Found at i:13513 original size:94 final size:94
Alignment explanation
Indices: 13352--13738 Score: 370
Period size: 94 Copynumber: 4.1 Consensus size: 94
13342 TGCGAGGCTG
* ** *
13352 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
13417 GTCGGGTGTTGCCGATGGTGACCGAGGCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCC
* *
13446 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
13511 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGC-C
******* * ** ** * *** * * ***
13541 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
13603 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
13636 TCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCAC
1 -C-CGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCAC
13700 CCGTCGGGGGTTGCCGATGGTGACCGAGGCCC
64 CCGTCGGGGGTTGCCGATGGTGACCGAGG-CC
13732 CCGCACC
1 CCGCACC
13739 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 58, Indels: 27
0.72 0.19 0.09
Matches are distributed among these distances:
94 116 0.52
95 39 0.18
96 37 0.17
97 29 0.13
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCC
Found at i:13536 original size:32 final size:32
Alignment explanation
Indices: 13500--13633 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
13490 CCTGGGGTTG
* * *
13500 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
13532 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
13564 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
13596 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
13629 CCGAG
1 CCGAG
13634 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:13727 original size:32 final size:32
Alignment explanation
Indices: 13691--13794 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
13681 CCTGGGGTTG
13691 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* *** * *
13723 CCGAGGCCCCCG-C-ACCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
13753 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
13785 CCGAGG-ACCC
1 CCGAGGCACCC
13795 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 18 0.33
31 12 0.22
32 24 0.44
ACGTcount: A:0.12, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:13743 original size:62 final size:62
Alignment explanation
Indices: 13668--13800 Score: 248
Period size: 62 Copynumber: 2.1 Consensus size: 62
13658 GTGCGGCACT
*
13668 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCA-CCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
13731 CCCGCACCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
13793 CCCGCACC
1 CCCGCACC
13801 CAACTCTCGG
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 63 0.91
63 6 0.09
ACGTcount: A:0.11, C:0.36, G:0.40, T:0.14
Consensus pattern (62 bp):
CCCGCACCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:13830 original size:157 final size:157
Alignment explanation
Indices: 13596--13884 Score: 458
Period size: 157 Copynumber: 1.8 Consensus size: 157
13586 CCAATGGTGA
* * *
13596 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
13661 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
13726 AGGCCCCCGCACCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCGTGGCCTGGGGTTG
* * *
13753 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
13815 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
13880 CCGAG
128 CCGAG
13885 ACACCCGTCT
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
156 31 0.26
157 88 0.73
158 2 0.02
ACGTcount: A:0.12, C:0.36, G:0.36, T:0.16
Consensus pattern (157 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCGTGGCCTGGGGTTG
Found at i:13890 original size:32 final size:32
Alignment explanation
Indices: 13848--13980 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
13838 CCTGGGGTTG
* *
13848 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
13880 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
13912 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
13944 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
13976 CCGAG
1 CCGAG
13981 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:14104 original size:33 final size:32
Alignment explanation
Indices: 14027--14115 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
14017 CTCACCAATG
*
14027 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
14059 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
14092 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
14116 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:22474 original size:95 final size:95
Alignment explanation
Indices: 22319--22707 Score: 383
Period size: 95 Copynumber: 4.1 Consensus size: 95
22309 TGCGAGGCTG
* ** *
22319 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
22384 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
22414 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
22479 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
22509 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
22571 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
22606 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
22670 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
22700 CCGCACCC
1 CCGCACCC
22708 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 62, Indels: 22
0.72 0.20 0.07
Matches are distributed among these distances:
94 32 0.14
95 125 0.57
96 34 0.15
97 30 0.14
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:22504 original size:32 final size:32
Alignment explanation
Indices: 22468--22601 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
22458 CCTGGGGTTG
* * *
22468 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
22500 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
22532 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
22564 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
22597 CCGAG
1 CCGAG
22602 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:22695 original size:32 final size:32
Alignment explanation
Indices: 22659--22763 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
22649 CCTGGGGTTG
22659 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
22691 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
22722 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
22754 CCGAGG-ACCC
1 CCGAGGCACCC
22764 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:22714 original size:63 final size:63
Alignment explanation
Indices: 22636--22770 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
22626 GTGCGGCACT
*
22636 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
22699 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
22762 CCCGCACCC
1 CCCGCACCC
22771 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:22728 original size:31 final size:31
Alignment explanation
Indices: 22636--22733 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
22626 GTGCGGCACT
22636 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
22667 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
22699 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
22730 CCCG
1 CCCG
22734 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:22859 original size:32 final size:32
Alignment explanation
Indices: 22817--22949 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
22807 CCTGGGGTTG
* *
22817 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
22849 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
22881 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
22913 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
22945 CCGAG
1 CCGAG
22950 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:22900 original size:158 final size:159
Alignment explanation
Indices: 22500--22920 Score: 532
Period size: 158 Copynumber: 2.7 Consensus size: 159
22490 CCGATGGTGA
* * * *
22500 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
22565 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
22629 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
22659 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * *
22721 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
22783 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
22817 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
22882 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
22921 ACCCGCCTGG
Statistics
Matches: 221, Mismatches: 31, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
157 32 0.14
158 104 0.47
159 85 0.38
ACGTcount: A:0.13, C:0.34, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:23073 original size:33 final size:32
Alignment explanation
Indices: 22996--23084 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
22986 CTCACCAATG
*
22996 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
23028 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
23061 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
23085 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:37000 original size:95 final size:94
Alignment explanation
Indices: 36845--37232 Score: 363
Period size: 95 Copynumber: 4.1 Consensus size: 94
36835 TGCGAGGCTG
* ** *
36845 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
36910 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
36940 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
37005 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTC-GGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
37035 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
37097 CACCCGCCTGGGATTACCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
37132 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
37196 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
37225 CCGCACCC
1 CCGCACCC
37233 GTGGCCTGGG
Statistics
Matches: 219, Mismatches: 62, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
93 24 0.11
94 12 0.05
95 117 0.53
96 37 0.17
97 29 0.13
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:37030 original size:32 final size:32
Alignment explanation
Indices: 36994--37127 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
36984 CCTGGGGTTG
* * *
36994 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
37026 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
37058 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * * *
37090 CCGAGGCCACCCGCCTGGGATTACCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
37123 CCGAG
1 CCGAG
37128 CCTCACGCAC
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
32 64 0.71
33 26 0.29
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:37220 original size:31 final size:32
Alignment explanation
Indices: 37185--37288 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
37175 CCTGGGGTTG
37185 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
37216 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
37247 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
37279 CCGAGG-ACCC
1 CCGAGGCACCC
37289 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:37238 original size:62 final size:63
Alignment explanation
Indices: 37162--37295 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
37152 GTGCGGCACT
*
37162 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
37224 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
37287 CCCGCACCC
1 CCCGCACCC
37296 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:37320 original size:157 final size:158
Alignment explanation
Indices: 37090--37378 Score: 442
Period size: 157 Copynumber: 1.8 Consensus size: 158
37080 CCAATGGTGA
* * *
37090 CCGAGGCCACCCGCCTGGGATTACCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTACCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
37155 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
37219 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * * *
37247 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTACCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
37309 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
37374 CCGAG
128 CCGAG
37379 ACACCCGTCT
Statistics
Matches: 119, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
156 30 0.25
157 65 0.55
158 24 0.20
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCGGGGATTACCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:37384 original size:32 final size:32
Alignment explanation
Indices: 37342--37474 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
37332 CCTGGGGTTG
* *
37342 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
37374 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
37406 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
37438 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
37470 CCGAG
1 CCGAG
37475 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:37598 original size:33 final size:32
Alignment explanation
Indices: 37521--37609 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
37511 CTCACCAATG
*
37521 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
37553 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
37586 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
37610 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:45985 original size:32 final size:32
Alignment explanation
Indices: 45949--46082 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
45939 GCCTGGGTTG
* * *
45949 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
45981 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
46013 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
46045 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
46078 CCGAG
1 CCGAG
46083 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:46175 original size:31 final size:31
Alignment explanation
Indices: 46140--46241 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
46130 CCTGGGGTTG
46140 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
* * ** *
46171 CCGAGGCCCCCGCACCCGG--GCCTG-GGGTTG-
1 CCGAGGCACCCG-TCGGGGTTGCC-GATGG-TGA
46201 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
46232 CCGAGG-ACCC
1 CCGAGGCACCC
46242 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
29 3 0.06
30 23 0.43
31 25 0.46
32 3 0.06
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (31 bp):
CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
Found at i:46203 original size:61 final size:62
Alignment explanation
Indices: 46117--46248 Score: 248
Period size: 61 Copynumber: 2.1 Consensus size: 62
46107 GTGCGGCACT
*
46117 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
46179 CCCGCACCCG-GGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
46240 CCCGCACCC
1 CCCGCACCC
46249 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 59 0.86
62 10 0.14
ACGTcount: A:0.11, C:0.38, G:0.39, T:0.13
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:46273 original size:155 final size:156
Alignment explanation
Indices: 46045--46330 Score: 454
Period size: 155 Copynumber: 1.8 Consensus size: 156
46035 CCAATGGTGA
* *
46045 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
46110 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGA
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
46175 GGCCCCCGCACCCGGGCCTGGGGTTG
131 GGCCCCCGCACCCGGGCCTGGGGTTG
* * *
46201 CCGAGG-CACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
46262 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGAC
46327 CGAG
128 CGAG
46331 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
154 24 0.20
155 88 0.73
156 8 0.07
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.15
Consensus pattern (156 bp):
CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGA
GGCCCCCGCACCCGGGCCTGGGGTTG
Found at i:46354 original size:32 final size:32
Alignment explanation
Indices: 46295--46426 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
46285 CCTGGGGTTG
* *
46295 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
46326 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
46358 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
46390 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
46422 CCGAG
1 CCGAG
46427 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:46549 original size:33 final size:31
Alignment explanation
Indices: 46473--46560 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
46463 CTCACCAATG
46473 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
46504 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
46537 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
46561 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:54863 original size:95 final size:95
Alignment explanation
Indices: 54708--55094 Score: 385
Period size: 95 Copynumber: 4.1 Consensus size: 95
54698 TGCGAGGCTG
* ** *
54708 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
54773 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
54803 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
54868 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * * * ** * * ***
54898 CCGTCTGGGTTTGC-C-GAT-GGTGCCGAG-ACACCCGTC-TGCTTTGCCAATGG-TGACCGAGG
1 CCG-CACCCAACGCTCGGTTCTGTG-CG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG
* * *
54957 CCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 -CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
54993 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
55057 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
55087 CCGCACCC
1 CCGCACCC
55095 GTGGCCTGGG
Statistics
Matches: 224, Mismatches: 53, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
93 7 0.03
94 60 0.27
95 150 0.67
96 7 0.03
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:54893 original size:32 final size:32
Alignment explanation
Indices: 54857--54988 Score: 169
Period size: 32 Copynumber: 4.2 Consensus size: 32
54847 CCTGGGGTTG
* * *
54857 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
54889 CCGAGACACCCGTCTGGGTTTGCCGATGGTG-
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
54920 CCGAGACACCCGTCT-GCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
54951 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
54984 CCGAG
1 CCGAG
54989 CCTCACGCAC
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
30 13 0.15
31 19 0.22
32 38 0.44
33 17 0.20
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:55056 original size:157 final size:157
Alignment explanation
Indices: 54889--55302 Score: 493
Period size: 157 Copynumber: 2.6 Consensus size: 157
54879 CCGATGGTGA
* * *
54889 CCGAGACACCCGTCTGGGTTTGCCGATGGTG-CCGAGACACCCGTCTGCTTTGCCAATGGTGACC
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGCTTTGCCAATGGTGACC
* * *
54953 GAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAG-CCTCACGCA-CCAACGCTCGGTTCTGTG
66 GAGG-CACCCGTCTGGGATTGCCGATGGTGACCGAGACC-C-CGCACCCAACGCTCGGCTCTGTC
*
55016 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * ** * * ***
55046 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCGTGGCCTGGGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGCTTTGCCAATGG-TGA
* *
55109 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGACCCCGCACCCAACTCTCGGCTCTGTC
64 CCGAGGCACCCGTCTGGGATTGCCGATGGTGACCGA-GACCCCGCACCCAACGCTCGGCTCTGTC
55173 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * *
55203 CCGA-GCCCCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCT-GCTTTGCCAATGGTGAC
* *
55267 CGAGACACCC-TCTGGGTTTTGCCGATGGTGACCGAG
65 CGAGGCACCCGTCTGGG-ATTGCCGATGGTGACCGAG
55303 GCCACCCGCC
Statistics
Matches: 215, Mismatches: 31, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
156 64 0.30
157 107 0.50
158 42 0.20
159 2 0.01
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.18
Consensus pattern (157 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGCTTTGCCAATGGTGACC
GAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGACCCCGCACCCAACGCTCGGCTCTGTCCGG
AACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:55101 original size:63 final size:62
Alignment explanation
Indices: 55023--55156 Score: 250
Period size: 63 Copynumber: 2.1 Consensus size: 62
55013 GTGCGGCACT
*
55023 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGAC
55086 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
55148 CCCGCACCC
1 CCCGCACCC
55157 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 33 0.47
63 37 0.53
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:55113 original size:189 final size:190
Alignment explanation
Indices: 54781--55145 Score: 524
Period size: 189 Copynumber: 1.9 Consensus size: 190
54771 CCGTCGGGTG
* *
54781 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
54846 GCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTG
66 GCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGG
* * *
54911 CCGATGGTGCCGAGACACCCGTCTGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 CCGAGGGTGCCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
54971 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
55034 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-T
65 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTT
* * *
55097 GGCCTG-GGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGG
129 GGCC-GAGGG-TGCCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGG
55146 ACCCCGCACC
Statistics
Matches: 156, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
188 7 0.04
189 127 0.81
190 22 0.14
ACGTcount: A:0.12, C:0.35, G:0.36, T:0.17
Consensus pattern (190 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGG
CCGAGGGTGCCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:55115 original size:31 final size:31
Alignment explanation
Indices: 55023--55120 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
55013 GTGCGGCACT
55023 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
55054 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
55086 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
55117 CCCG
1 CCCG
55121 TCGGGGTTGC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:55144 original size:31 final size:32
Alignment explanation
Indices: 55046--55149 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
55036 CCTGGGGTTG
*
55046 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
55078 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
55109 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
55140 CCGAGG-ACCC
1 CCGAGGCACCC
55150 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 7 0.13
31 32 0.59
32 15 0.28
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:55144 original size:94 final size:95
Alignment explanation
Indices: 55046--55276 Score: 231
Period size: 94 Copynumber: 2.4 Consensus size: 95
55036 CCTGGGGTTG
* * *
55046 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAG-GCCCCCGCACCCGTGGCCTGGGGTTGC
1 CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGGTTGC
55110 CGAGGCACCCGTC-GGGGTTGCCGATGGTGA
66 CGA-GCACCCGTCGGGGGTTGCCGATGGTGA
* *** * * * * *
55140 CCGAGG-ACCCCGCACCCAACTCT-CGGCT-CTGTCCG-GAACTCCCGCACCCGTGGCCTGGGGT
1 CCGAGGCA-CCCG-TCCGGGCT-TGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGGT
*
55201 TGCCGAGCCCCCGTCGGGGGTTGCCGATGGTGA
63 TGCCGAGCACCCGTCGGGGGTTGCCGATGGTGA
* * *
55234 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCC
1 CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGA-ACCC
55277 TCTGGGTTTT
Statistics
Matches: 102, Mismatches: 25, Indels: 18
0.70 0.17 0.12
Matches are distributed among these distances:
92 1 0.01
93 15 0.15
94 74 0.73
95 8 0.08
96 4 0.04
ACGTcount: A:0.13, C:0.36, G:0.36, T:0.16
Consensus pattern (95 bp):
CCGAGGCACCCGTCCGGGCTTGCCGATGGTGACCGAGAACCCCCGCACCCGTGGCCTGGGGTTGC
CGAGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:55246 original size:32 final size:32
Alignment explanation
Indices: 55210--55334 Score: 155
Period size: 32 Copynumber: 3.9 Consensus size: 32
55200 TTGCCGAGCC
55210 CCCGTCGGGGGTTGCCGATGGTGACCGAGACA
1 CCCGTCGGGGGTTGCCGATGGTGACCGAGACA
* *
55242 CCCGTCTGGGTTTGCCGATGGTGACCGAGACA
1 CCCGTCGGGGGTTGCCGATGGTGACCGAGACA
** *
55274 CCC-TCTGGGTTTTGCCGATGGTGACCGAGGCCA
1 CCCGTC-GGGGGTTGCCGATGGTGACCGA-GACA
**
55307 CCCG-CCTGGGTTGCCGATGGTGACCGAG
1 CCCGTCGGGGGTTGCCGATGGTGACCGAG
55335 CCTCACGCAC
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
31 3 0.04
32 71 0.88
33 7 0.09
ACGTcount: A:0.14, C:0.30, G:0.37, T:0.20
Consensus pattern (32 bp):
CCCGTCGGGGGTTGCCGATGGTGACCGAGACA
Found at i:55457 original size:33 final size:32
Alignment explanation
Indices: 55380--55468 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
55370 CTCACCAATG
*
55380 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
55412 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
55445 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
55469 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Done.