Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009548.1 Hibiscus syriacus cultivar Beakdansim tig00116429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53393
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.24
Found at i:11244 original size:95 final size:95
Alignment explanation
Indices: 11089--11477 Score: 383
Period size: 95 Copynumber: 4.1 Consensus size: 95
11079 TGCGAGGCTG
* ** *
11089 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
11154 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
11184 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
11249 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
11279 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
11341 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
11376 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
11440 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
11470 CCGCACCC
1 CCGCACCC
11478 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 62, Indels: 22
0.72 0.20 0.07
Matches are distributed among these distances:
94 32 0.14
95 125 0.57
96 34 0.15
97 30 0.14
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:11274 original size:32 final size:32
Alignment explanation
Indices: 11238--11371 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
11228 CCTGGGGTTG
* * *
11238 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
11270 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
11302 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
11334 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
11367 CCGAG
1 CCGAG
11372 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:11465 original size:32 final size:32
Alignment explanation
Indices: 11429--11533 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
11419 CCTGGGGTTG
11429 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
11461 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
11492 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
11524 CCGAGG-ACCC
1 CCGAGGCACCC
11534 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:11484 original size:63 final size:63
Alignment explanation
Indices: 11406--11540 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
11396 GTGCGGCACT
*
11406 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
11469 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
11532 CCCGCACCC
1 CCCGCACCC
11541 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:11498 original size:31 final size:31
Alignment explanation
Indices: 11406--11503 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
11396 GTGCGGCACT
11406 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
11437 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
11469 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
11500 CCCG
1 CCCG
11504 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:11596 original size:157 final size:158
Alignment explanation
Indices: 11334--11622 Score: 451
Period size: 157 Copynumber: 1.8 Consensus size: 158
11324 CCAATGGTGA
* * *
11334 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
11399 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
11464 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
11492 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
11554 GTCCGGAACTCCCGCACCCGTGGCCT-GGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
11618 CCGAG
128 CCGAG
11623 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
157 73 0.61
158 45 0.38
159 2 0.02
ACGTcount: A:0.12, C:0.37, G:0.36, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:11628 original size:32 final size:32
Alignment explanation
Indices: 11586--11718 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
11576 GCCTGGGTTG
* *
11586 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
11618 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
11650 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
11682 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
11714 CCGAG
1 CCGAG
11719 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:11685 original size:158 final size:159
Alignment explanation
Indices: 11270--11689 Score: 523
Period size: 158 Copynumber: 2.7 Consensus size: 159
11260 CCGATGGTGA
* * * *
11270 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
11335 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
11399 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * * *** * *
11429 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * *
11491 G-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
11553 TGTCCGGAACTCCCGCACCCGTGGCCT-GGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
11586 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
11651 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
11690 ACCCGCCTGG
Statistics
Matches: 220, Mismatches: 31, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
157 85 0.39
158 92 0.42
159 43 0.20
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:11728 original size:158 final size:155
Alignment explanation
Indices: 11270--11853 Score: 446
Period size: 158 Copynumber: 3.6 Consensus size: 155
11260 CCGATGGTGA
* * * * *
11270 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *
11335 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG-
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGC-CACCCACCAAAGTTCGG--ATGTGC
11399 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
128 CGGC-CTCCCGCACCCGTGGCCT-GGGTTG
* * * *** * *
11429 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * * * * * *
11491 G-CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-CCGCACCCAACTCTCGGCTC
63 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGG-CCACC-CACCAAAGT-TCGGATG
*
11553 TGTCCGGAACTCCCGCACCCGTGGCCTGGGTTG
125 TG-CCGG-CCTCCCGCACCCGTGGCCTGGGTTG
11586 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *** *
11651 CGA-GACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGTTGCCGATGGTGAC
66 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTT-CGGAT-GTG-C
* * * **
11715 CGAGCCTCACGCACCAACGCTCGGTTCTGTGCGG
128 CG-GCCTCCCGCACC--CG-T-GG-CCTGGGTTG
*** * * * * *
11749 CACTCCCTCACCAATGGCCTGGGGTTGCCGATGGTGACCGAGACACCCGTATGGTTTTGCCGATG
1 C-CGAGC-CACC---CGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATG
11814 GTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
61 GTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCG
11854 GGGCTCACGC
Statistics
Matches: 337, Mismatches: 59, Indels: 48
0.76 0.13 0.11
Matches are distributed among these distances:
156 6 0.02
157 95 0.28
158 96 0.28
159 42 0.12
160 2 0.01
161 1 0.00
162 2 0.01
163 6 0.02
164 2 0.01
165 4 0.01
168 53 0.16
169 28 0.08
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (155 bp):
CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCCACCCACCAAAGTTCGGATGTGCCGG
CCTCCCGCACCCGTGGCCTGGGTTG
Found at i:11842 original size:33 final size:32
Alignment explanation
Indices: 11765--11853 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
11755 CTCACCAATG
*
11765 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
11797 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
11830 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
11854 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:20186 original size:94 final size:95
Alignment explanation
Indices: 20033--20217 Score: 300
Period size: 94 Copynumber: 2.0 Consensus size: 95
20023 TGCGAGGCTG
* *
20033 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCA-CC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
*
20097 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* ** *
20127 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
20192 GTCGGGGGTTGCCGATGGTGACCGAG
66 GTCGGGGGTTGCCGATGGTGACCGAG
20218 ACACCGTCTG
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
94 56 0.67
95 27 0.33
ACGTcount: A:0.12, C:0.36, G:0.35, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:20225 original size:31 final size:32
Alignment explanation
Indices: 20181--20312 Score: 169
Period size: 32 Copynumber: 4.2 Consensus size: 32
20171 CCTGGGGTTG
* * *
20181 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
20213 CCGAGACA-CCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
20244 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
20276 CCGAGGCCACCCGCCTGGGATTGCCGATGGTG-
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
20308 CCGAG
1 CCGAG
20313 CCTCACGCAC
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
31 30 0.34
32 36 0.41
33 22 0.25
ACGTcount: A:0.15, C:0.30, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:20280 original size:63 final size:64
Alignment explanation
Indices: 20179--20312 Score: 173
Period size: 63 Copynumber: 2.1 Consensus size: 64
20169 GGCCTGGGGT
* * * * *
20179 TGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGA-GACA-CCGTCTGGGTTTGCCGATGG
1 TGCCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACACCCGCCTGGGATTGCCGATGG
* * *
20241 TGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGG
1 TG-CCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACACCCGCCTGGGATTGCCGATGG
20306 TGCCGAG
1 TGCCGAG
20313 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
62 2 0.03
63 31 0.51
64 8 0.13
65 20 0.33
ACGTcount: A:0.15, C:0.30, G:0.37, T:0.19
Consensus pattern (64 bp):
TGCCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACACCCGCCTGGGATTGCCGATGG
Found at i:20421 original size:62 final size:62
Alignment explanation
Indices: 20347--20479 Score: 250
Period size: 62 Copynumber: 2.1 Consensus size: 62
20337 GTGCGGCACT
20347 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG-C
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA-CCGTCGGGGGTTGCCGATGGTGACCGAGGAC
20409 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCGTCGGGGGTTGCCGATGGTGACCGAGGAC
20471 CCCGCACCC
1 CCCGCACCC
20480 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
61 29 0.41
62 41 0.59
ACGTcount: A:0.11, C:0.36, G:0.40, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:20568 original size:32 final size:32
Alignment explanation
Indices: 20526--20658 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
20516 CCTGGGGTTG
* *
20526 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
20558 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
20590 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
20622 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
20654 CCGAG
1 CCGAG
20659 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:20782 original size:33 final size:32
Alignment explanation
Indices: 20705--20793 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
20695 CTCACCAATG
*
20705 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
20737 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
20770 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
20794 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:33830 original size:31 final size:32
Alignment explanation
Indices: 33786--33914 Score: 142
Period size: 31 Copynumber: 4.2 Consensus size: 32
33776 CCTGGGGTTG
* * *
33786 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
33818 CCGAGACA-CCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
33849 CCGAG--ACCCG--TGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
33877 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
33910 CCGAG
1 CCGAG
33915 CTCACGCACC
Statistics
Matches: 83, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
28 20 0.24
29 2 0.02
30 3 0.04
31 31 0.37
32 8 0.10
33 19 0.23
ACGTcount: A:0.16, C:0.29, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:34007 original size:32 final size:32
Alignment explanation
Indices: 33971--34075 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
33961 CCTGGGGTTG
33971 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
* **** * *
34003 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
34034 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
34066 CCGAGG-ACCC
1 CCGAGGCACCC
34076 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
31 26 0.48
32 28 0.52
ACGTcount: A:0.11, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:34026 original size:63 final size:63
Alignment explanation
Indices: 33948--34082 Score: 261
Period size: 63 Copynumber: 2.1 Consensus size: 63
33938 GTGCGGCACT
*
33948 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
34011 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
34074 CCCGCACCC
1 CCCGCACCC
34083 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:34040 original size:31 final size:31
Alignment explanation
Indices: 33948--34045 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
33938 GTGCGGCACT
33948 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
33979 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
34011 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
34042 CCCG
1 CCCG
34046 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:34207 original size:32 final size:32
Alignment explanation
Indices: 34129--34261 Score: 200
Period size: 32 Copynumber: 4.2 Consensus size: 32
34119 CCTGGGGTTG
* *
34129 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGCCACCCGTCTGGGTTTGCCGATGGTGA
34161 CCGAG--ACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGCCACCCGTCTGGGTTTGCCGATGGTGA
*
34191 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGCCACCCGTCTGGGTTTGCCGATGGTGA
*
34223 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GCCACCCGTCTGGGTTTGCCGATGGTGA
34255 CCGAGCC
1 CCGAGCC
34262 TCACGCACCA
Statistics
Matches: 94, Mismatches: 4, Indels: 7
0.90 0.04 0.07
Matches are distributed among these distances:
30 28 0.30
31 3 0.03
32 51 0.54
33 12 0.13
ACGTcount: A:0.14, C:0.32, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGCCACCCGTCTGGGTTTGCCGATGGTGA
Found at i:34226 original size:62 final size:63
Alignment explanation
Indices: 34129--34259 Score: 194
Period size: 62 Copynumber: 2.1 Consensus size: 63
34119 CCTGGGGTTG
* *
34129 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGA-G-ACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGGCACCCGCCTGGG-TTGCCGATGGTGA
* *
34191 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGG-CACCCGCCTGGGTTGCCGATGGTGA
34255 CCGAG
1 CCGAG
34260 CCTCACGCAC
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
62 33 0.53
63 1 0.02
64 18 0.29
65 10 0.16
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGGCACCCGCCTGGGTTGCCGATGGTGA
Found at i:34236 original size:158 final size:156
Alignment explanation
Indices: 33818--34236 Score: 487
Period size: 158 Copynumber: 2.7 Consensus size: 156
33808 CCGATGGTGA
* * * *
33818 CCGAGACA-CCGTCTGGGTTTGCCGATGGTGACCGAGACCCG-TGGCTTTGCCAATGGTGACCGA
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACCCGCTGGGTTTGCCGATGGTGACCGA
* * * *
33881 GGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCTCA--CGCACCAACGCTCGGTTCTGTGCG
66 -GACACCCGTCTGGGATTGCCGATGGTGACCGAGGC-CACCCGCACCAACGCTCGGCTCTGTCCG
*
33943 GCACTCCCGCACCCGTGGCCTGGGGTTG
129 GAACTCCCGCACCCGTGGCCTGGGGTTG
* * *** * *
33971 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCGCACCCG-TGGCCTG-GGGTTG
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGA-G-ACCCGC-TGGGTTTGCC-GATGG-TG
* * * * *
34034 -CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC-CCCGCACCCAACTCTCGGCTCTG
61 ACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCACCCGCA-CCAACGCTCGGCTCTG
34097 TCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
125 TCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
34129 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCGAGACCCGTCTGGGTTTGCCGATGGTGACCG
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACCCG-CTGGGTTTGCCGATGGTGACCG
*
34194 AGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGC
65 AGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCACCCGC
34237 CTGGGTTGCC
Statistics
Matches: 219, Mismatches: 31, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
153 7 0.03
154 25 0.11
155 1 0.00
156 41 0.19
157 59 0.27
158 86 0.39
ACGTcount: A:0.13, C:0.34, G:0.35, T:0.17
Consensus pattern (156 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACCCGCTGGGTTTGCCGATGGTGACCGA
GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCACCCGCACCAACGCTCGGCTCTGTCCGGA
ACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:34381 original size:32 final size:31
Alignment explanation
Indices: 34306--34392 Score: 104
Period size: 32 Copynumber: 2.7 Consensus size: 31
34296 CTCACCAATG
34306 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
34337 GTATGGTTTTGCCGATGGTGACCGAGGC-CACC
1 GCCTGG-GTTGCCGATGGTGACCGAGACAC-CC
34369 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
34393 GGGCTCACGC
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
31 5 0.11
32 41 0.89
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:42704 original size:95 final size:95
Alignment explanation
Indices: 42549--42935 Score: 365
Period size: 95 Copynumber: 4.1 Consensus size: 95
42539 TGCGAGGCTG
* ** *
42549 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
42614 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
42644 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
42709 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
42739 CCGTCTGGGTTTGC-CGATGGTGACCGAG-AC-ACCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
42800 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
42835 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
42899 GTCGGGGGTTGCCGATGGTGACCGAGG-CC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
42928 CCGCACCC
1 CCGCACCC
42936 GTGGCCTGGG
Statistics
Matches: 218, Mismatches: 62, Indels: 25
0.71 0.20 0.08
Matches are distributed among these distances:
93 5 0.02
94 38 0.17
95 137 0.63
96 38 0.17
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:42734 original size:32 final size:32
Alignment explanation
Indices: 42698--42830 Score: 178
Period size: 32 Copynumber: 4.2 Consensus size: 32
42688 CCTGGGGTTG
* * *
42698 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
42730 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
42762 CCGAGACA-CCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
42793 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
42826 CCGAG
1 CCGAG
42831 CCTCACGCAC
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
31 25 0.28
32 41 0.46
33 23 0.26
ACGTcount: A:0.16, C:0.30, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:42924 original size:32 final size:32
Alignment explanation
Indices: 42888--42991 Score: 101
Period size: 32 Copynumber: 3.3 Consensus size: 32
42878 CCTGGGGTTG
42888 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
**** * *
42920 CCGAGGC-CCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCGGGGGTTGCC-GATGG-TGA
42950 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
42982 CCGAGG-ACCC
1 CCGAGGCACCC
42992 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 15 0.28
31 18 0.33
32 21 0.39
ACGTcount: A:0.12, C:0.34, G:0.41, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
Found at i:42941 original size:62 final size:63
Alignment explanation
Indices: 42865--42998 Score: 261
Period size: 62 Copynumber: 2.1 Consensus size: 63
42855 GTGCGGCACT
42865 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGG-C
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
42927 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
42990 CCCGCACCC
1 CCCGCACCC
42999 AACTCTCGGC
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
62 61 0.86
63 10 0.14
ACGTcount: A:0.10, C:0.37, G:0.40, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:42956 original size:30 final size:31
Alignment explanation
Indices: 42865--42961 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
42855 GTGCGGCACT
42865 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * *
42896 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGC-
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
42927 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
42958 CCCG
1 CCCG
42962 TCGGGGGTTG
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
30 15 0.31
31 18 0.38
32 15 0.31
ACGTcount: A:0.09, C:0.37, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:43027 original size:157 final size:154
Alignment explanation
Indices: 42793--43078 Score: 425
Period size: 157 Copynumber: 1.8 Consensus size: 154
42783 CCAATGGTGA
* * *
42793 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
42858 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCA-CC--CGGGGGTTGCCGATGGTGACCG
42923 AGGCCCCGCACCCGTGGCCTGGGGTTG
128 AGGCCCCGCACCCGTGGCCTGGGGTTG
* * *
42950 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
43012 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGGGGGTTGCCGATGGTGACCG
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGGGGGTTGCCGATGGTGACCG
43077 AG
128 AG
43079 ACACCCGTCT
Statistics
Matches: 118, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
154 24 0.20
156 33 0.28
157 59 0.50
158 2 0.02
ACGTcount: A:0.12, C:0.36, G:0.36, T:0.15
Consensus pattern (154 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGGGGGTTGCCGATGGTGACCGAGG
CCCCGCACCCGTGGCCTGGGGTTG
Found at i:43102 original size:32 final size:32
Alignment explanation
Indices: 43061--43177 Score: 173
Period size: 32 Copynumber: 3.6 Consensus size: 32
43051 CACCCGGGGG
43061 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
43093 TTGCCGATGGTGACCGACGAGACACCCGTCTGGGT
1 TTGCCGATGGTGA-C--CGAGACACCCGTCTGGGT
* *
43128 TTGCCGATGGTGACCGAGGCCACCCGCCTGGG-
1 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
43160 TTGCCGATGGTGACCGAG
1 TTGCCGATGGTGACCGAG
43178 CCTCACGCAC
Statistics
Matches: 79, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
31 1 0.01
32 33 0.42
33 13 0.16
34 1 0.01
35 31 0.39
ACGTcount: A:0.15, C:0.29, G:0.36, T:0.20
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGTCTGGGT
Found at i:43121 original size:35 final size:35
Alignment explanation
Indices: 43061--43176 Score: 172
Period size: 35 Copynumber: 3.5 Consensus size: 35
43051 CACCCGGGGG
43061 TTGCCGATGGTGA-C--CGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGACGAGACACCCGTCTGGGT
43093 TTGCCGATGGTGACCGACGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGACGAGACACCCGTCTGGGT
* *
43128 TTGCCGATGGTGACCGA-G-GCCACCCGCCTGGG-
1 TTGCCGATGGTGACCGACGAGACACCCGTCTGGGT
43160 TTGCCGATGGTGACCGA
1 TTGCCGATGGTGACCGA
43177 GCCTCACGCA
Statistics
Matches: 79, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
32 30 0.38
33 13 0.16
34 1 0.01
35 35 0.44
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (35 bp):
TTGCCGATGGTGACCGACGAGACACCCGTCTGGGT
Found at i:43228 original size:347 final size:346
Alignment explanation
Indices: 42580--43238 Score: 1135
Period size: 347 Copynumber: 1.9 Consensus size: 346
42570 GTGCGGCACT
* *
42580 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
* * *
42645 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
42710 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCGTC
131 -CGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCGTC
42775 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
195 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
**
42840 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG
260 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGG
42905 GGTTGCCGATGGTGACCGAGGC
325 GGTTGCCGATGGTGACCGAGGC
** *
42927 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
42992 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCA-CC-
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
43055 CGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGACGAGACACCC
131 CGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA-C--CGAGACA-CC
* *
43120 GTCTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCAC
192 GTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCAC
*
43184 GCACCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
257 GCACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
43239 TGGTGACCGA
Statistics
Matches: 295, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
344 51 0.17
345 1 0.00
346 2 0.01
347 201 0.68
348 40 0.14
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (346 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
CGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCGTCT
GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
CAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGGG
GTTGCCGATGGTGACCGAGGC
Found at i:43273 original size:32 final size:32
Alignment explanation
Indices: 43227--43311 Score: 116
Period size: 32 Copynumber: 2.7 Consensus size: 32
43217 ACCAATGGCC
* *
43227 TGGGGTTGCCGATGGTGACCGAGACACCCGTA
1 TGGGATTGCCGATGGTGACCGAGACACCCGCA
** * *
43259 TGGTTTTGCCGATGGTGACCGAGGCACCCGCC
1 TGGGATTGCCGATGGTGACCGAGACACCCGCA
43291 TGGGATTGCCGATGGTGACCG
1 TGGGATTGCCGATGGTGACCG
43312 GGGCTCACGC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.15, C:0.26, G:0.38, T:0.21
Consensus pattern (32 bp):
TGGGATTGCCGATGGTGACCGAGACACCCGCA
Done.